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TCONS_00000145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000145
Unique NameTCONS_00000145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000145 ID=TCONS_00000145|Name=TCONS_00000145|organism=Clytia hemisphaerica|type=transcript|length=290bp
CTCAGCTGAGATCGTGTGGTGTGGATTTATTTTTGGGAAATCTGAACACA
AGCTACAACATCTGCTTATTTGCTACCTACCTACCCTGTTCATTCAACTT
CTACTTGACACTTCAAAGACTACAAACATCTTCTCTTCGTCATTCTGTTC
TAGccctcaaaaataaaaatgcctAGAAAAGCCATGAAATGCATTGTTGA
AGTTGATCTTCATGTGACAACCTGTCCAGGAACATTTCTACGAGACTATG
AATATGTATATCTTCATATGGAAATGCTTGGGCTTGAAGC
Run BLAST on NCBI

transcript from alignment at sc0000001:194465..196828-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000145 ID=TCONS_00000145|Name=TCONS_00000145|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0000001:194465..196828- (Clytia hemisphaerica)
CTCAGCTGAGATCGTGTGGTGTGGATTTATTTTTGGGAAATCTGAACACA AGCTACAACATCTGCTTATTTGCTACCTACCTACCCTGTTCATTCAACTT CTACTTGACACTTCAAAGACTACAAACATCTTCTCTTCGTCATTCTGTTC TAGCCCTCAAAAATAAAAATGCCTAGAAAAGCCATGAAATGCATTGTTGA AGTTGATCTTCATGTGGTAAGTTCTTTTTTACATTTAAAACTTTGATAGA TTCTCTGTTATTTTCAAGCAAAATTGGTTTTGATTAATTGTTGATTAATT TTAGCAGAGTTTAATTCAAGCATAAGTCAATTTAAGTCTATAAGTCCAAT CCCACAAGACGGCAATCACAATGTAGAATGGCTAAACTTTCTACTTTCTC TCTGGTTGTTATTCCCGGGGAAACTTTCTTATTAGTCAGTCAGGGATATG TTCAGATTTGCTGTTTGTCAATTGGTTAGTCAGATCGGTTAAATAGACGA TAGGTAATCGGTTAAATAAAGGGTCATTGTTGTTATGCCTAGATACAGTA CCTCAGAGGTAAATAATCGTACCAATAGAATTGTATTTTTAATCTAACTT GATCAAGTTTTGTTGCCCTAATGTTTGATAGTTGGGTTATCAAACTTAAA TCAAATACTAGCTAATTCTCAAAGAGACCTTAAAAATAGTTCAATTAGTT TGTTTATTGATAAACTTCATCAAATATCGAACATATATAATCTGCAACTG ACGCAATGCAAAAAATCAGCAATCTTAGTATTGATTGATCTTTCAAAAAG ATTACATCATTGACGCAAAATAGTCAGCCTACTTTTTTTAGCACTGTTGG TGGCAGACTTACCCCCTCCATTCCGCTTACAGATTGTATAGAAGCTTTTT TGGTGGCCATCAAAAAAATGCTCTGTTCGTGTCGCAATGGGTGTTAAAAA TGCATGCGGGCGGACAGGCGGTCGAAAAAATTCCTGTTTTTTTTTTAATT AAACCAGTAATTCGGGGGCGGGTGGTGACGCGAACAAAACATTTTTTGAT GGTCGTCAGAGCAATTAAGGAAAAAGCTATACTTTAAAAGAACATTGATT TTCCTGGATTTTTTTCCGCTTCTCTCATGCACCGGAAAATCACCGAAAAA TATGATGCGGGCGGTTGACGCGAATAGAACAATTTTTCGATGGCCGCCTT TGTCATCCAGGGTTTTGTCAAATTTGTCAAACATTTCTTCTTGTCAAACT TTGTCAAACTTGATGTTTTTAGCCAAACTTAATAACTCGCATCTTAGCAA TTTTTGAGAATTTTGATTAATGAATTTAAATTAATTTTTGTTGTTCAGTT AAGTTCAAGAAAGTTCTTTTAGTTCTGTAATCAAATTGTTTGATTGTATT ATCAAAATAGAAAGTGCAATTTGAAGGAAAACTACAATAAAGGTCATAAT ATTGAGAAAGTCGATTTTGGGCTATCTCTTTAATTTAATCGAATATTTCA ATTCGGAAGGGGTTGGCAGACTTACAGGCTATATTTTGAGCATTATTTGA CTATTTTTGAACTTTTGAACCCTCAGATACTAAGGTCCTAAGTCTTAAGT CTCATGATAAAACTCAGAGTTAAAACTCTACCCTTCCAACCTACTTTAGA GCACTTGCAAATCGCTTGTGGTTCAAAAACTTCCCGGTGTATTTCTCTTT TTTCTCAAATATTATATGACCTTGATTGTAGTTGTGTCGCTATTTTTGCT TCAAGGTGATTTCTATAACTCAAAGAATAAGTTAAATTATTTTTATTTCT AGTTCTATAAATTTTAGTCACATAATACACTAACGTACATTATCATGATA TTGACATTTTATTTTATTTCAATCCTTATTCTAGCAGTAGGCTTTTCTAT CTTCATATTTCCGAAGAAAACAGAATTTGCCGCAAAAATTCCTTAAATAG AAGAGGAATTTACATTTTAAATATTTTCATTTAAGATTTGGTGCAAAAAA GGGAAACTAGAAAAGCTTGCAAGCTAAACTAAAATGAGTAATTATAAACT CCAACCAACTTCATTATCTAAAAATATAGCACATGCATATTTTACTAATC GTATGCATCAATCTGTTATAGTTTTAATGCTGGAGTTTAAAATTATTCAA TTCGTAATACATCATGATTAAGAAAATATCTTTAGTAGTATGTCAGTTTA TTTATTATCACAAATAAGTGCCAACAATTGTTTCACTGTATTTAATGATA TATAATCATGTACTGTATTCCATTGCTTGTTACTTTTCAGACAACCTGTC CAGGAACATTTCTACGAGACTATGAATATGTATATCTTCATATGGAAATG CTTGGGCTTGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000082XLOC_000082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000145-exon-sc0000001-1575043694:196613..196828TCONS_00000145-exon-sc0000001-1575043694:196613..196828Clytia hemisphaericaexon
TCONS_00000145-exon-sc0000001-1575043694:194465..194538TCONS_00000145-exon-sc0000001-1575043694:194465..194538Clytia hemisphaericaexon
TCONS_00000145-exon-sc0000001-1510915933:196613..196828TCONS_00000145-exon-sc0000001-1510915933:196613..196828Clytia hemisphaericaexon
TCONS_00000145-exon-sc0000001-1510915933:194465..194538TCONS_00000145-exon-sc0000001-1510915933:194465..194538Clytia hemisphaericaexon
TCONS_00000145-exon-sc0000001-1491911889:196613..196828TCONS_00000145-exon-sc0000001-1491911889:196613..196828Clytia hemisphaericaexon
TCONS_00000145-exon-sc0000001-1491911889:194465..194538TCONS_00000145-exon-sc0000001-1491911889:194465..194538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:194465..196828 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.545 17.8158 21.6748 29.2666 121.49 100.004 45.8453 59.6277 15.8964 28.628 6.63768 14.1763 6.00622 0 0 6.40658 3.98764 4.98598 1.69062 0.969641 3.87069 3.34823 7.80569 20.7992 30.2151 33.4076 6.10817 15.0301 2.64158 10.3153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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