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TCONS_00000141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000141
Unique NameTCONS_00000141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000141 ID=TCONS_00000141|Name=TCONS_00000141|organism=Clytia hemisphaerica|type=transcript|length=1216bp
ctttcactttcgttttctttcaatttttcagattcCTAGCAGCCAGTTTG
AACATCTTCAGCTGTCAGCCATCAGCAACGTCTTCAGCACAAAAGCAGTT
ATTTGCATTTCTCTTCAGGTTTTTGCTGCTGTAACTATCAATAAGAACGA
TGAGTCCATTAATTTACACTTGTCttgcttttattttcattgtcattGCA
TTTTGTTTTTACATTGGAATGTTTCGTTCAATCAGCATCAAAGTTTCCAA
ACCACCTTTTCCAGTTGGAGGACATTATTTATACAAATTTTACCAAACAC
CGTATGCTGAAGCCAGAATGGCTTATAGAGCTATCAATAAATTCCCCATA
AAGAAGACATTTAAATTGGTTGGAATTTATTATGATGACCCTGATAAaGT
AAAAGAAGATTCAACACGTTATGCAGTTGGCATACTTGTCAATAATGATG
ATTTTGACAAGAACAAGGAGCTTGCATCAACAATGGGAAGTGTTGGCTAC
CAACATATTCAATTACCGCAAATTGATTCTGTTGTTACAACTTGTTTTCC
TCTTAGAAGTGTTTTGTCCATCTTGGTGGCAATTCAAAGGGTTTACCCAA
AACTTAACAACTTCATCAAGAAAGAGAAACTCCAGGCACACCCATGTACA
GAGTATTACCCTCATGGTATGGAAGAAATGCATTTTATTAACCCTCTGGA
AAAGAATGATTCATTTTATGTACCTGAGTATCACGTGACATATGTGGAAT
ACATTGATTCTAAAGAAGATTGAACTGTAATAGAAACTTAAAGAAATTAT
CTTCTTGGTAAATAAAAGTTTGCTAGAGAGACAGTGAAATATGAGTTAca
gaatttcaatttcaattataGGAATTATCTAGCGAGAGACAAGAGGGGTG
CAAAACTtttgtaggagagcagatttttatgacacaatgattatcttttt
atattatctatatattaatagtggtagtctgtatgtgtgtttgtctgtgt
tttctactttcgttttcgctttgtttgtgttttaaaattatgacttttag
tctcttgctccacaaatttgttttattggattcgcaccatttgcaaaaga
tcggatagagcttggtttagactttaaagtaggggccactatgtcgtgaa
aaagcttcccgtgtgcagcagcttgtgcaaagggattttatgattgagta
ttgttccttgaatgta
Run BLAST on NCBI

protein sequence of TCONS_00000141-protein

>TCONS_00000141-protein ID=TCONS_00000141-protein|Name=TCONS_00000141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MSPLIYTCLAFIFIVIAFCFYIGMFRSISIKVSKPPFPVGGHYLYKFYQT
PYAEARMAYRAINKFPIKKTFKLVGIYYDDPDKVKEDSTRYAVGILVNND
DFDKNKELASTMGSVGYQHIQLPQIDSVVTTCFPLRSVLSILVAIQRVYP
KLNNFIKKEKLQAHPCTEYYPHGMEEMHFINPLEKNDSFYVPEYHVTYVE
YIDSKED
Run BLAST on NCBI

transcript from alignment at sc0000001:129901..132533-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000141 ID=TCONS_00000141|Name=TCONS_00000141|organism=Clytia hemisphaerica|type=transcript|length=2633bp|location=Sequence derived from alignment at sc0000001:129901..132533- (Clytia hemisphaerica)
CTTTCACTTTCGTTTTCTTTCAATTTTTCAGATTCCTAGCAGCCAGTTTG AACATCTTCAGCTGTCAGCCATCAGCAACGTCTTCAGCACAAAAGCAGTT ATTTGCATTTCTCTTCAGGTTTNTCAGCAACGTCTTCATCACAAAAGCAG TTATTTGCATTTCTCTTCAGGTTTTTGCTGCTGTAACTATCAATAAGAAC GATGAGTCCATTAATTTACACTTGTCTTGCTTTTATTTTCATTGTCATTG CATTTTGTTTTTACATTGGAATGTTTCGTTCAATCAGCATCAAAGTTTCC AAACCACCTTTTCCAGTTGGAGGACATTATTTATACAAATTTTACCAAAC ACCGTATGCTGAAGCCAGAATGGCTTATAGAGCTATCAATAAATTCCCCA TAAAGAAGACATTTAAATTGGTTGGAATTTATTATGATGACCCTGATAAA GTATTTTATTTTAAGTTTTTCTTTTAAAATTTCTTTCTTCAGTCTTTTTT TGCTTATGGTACCATGCATGAAGTCGAGTAATTTGCATCAGTGAAGGCTA ACATGCATTTCCCTCAAACGAATAACCTTGCTGGTCATTAAAATACAAAT TTAAATGAAAACAAAAATGGTATAGAGCTGCTAGCGGAGCTGCGTAGTTG ATTTGTTTTGAAATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAAT TATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCATAATTATTACAA TATGCATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNACAATATGCATGATATAGTAATTATGCATGGC TCTATCATTGTTTTTATGGCTGGACTACATAATTATTCAACAGGACGTCC TCTTTGAAAAAAGGTCTATTTTGCTGCCTTGATTGGTCAGTCCTTTGATG GGTATGCAAGTTTCCCTCCACTGATGCAAGTTACCCGACTTCACAGTATA ATAGAGCTATTCCTAGTAAACCCAATGCCATGCATGTTCAATAATTAGAA ACTCAAACAATAAAACAATAAACAGATGGCTGCATGGGTGCATAATTAGC ATATAAGTGTGTAATGATATTTTTCTTGTCATTGTTTTGATGTTGGAATC TGCCTGAGATTAGAGGAGGTTTAATCTATACTTATGTACTACCTTCAATT TGGGTCAAAACTACATTTGCAAATTTGCAGCTAGAATGCAACAGCAAATA ATTTAATGTTGTGTTTAATTTTGAATTTTACACATTTTAATTTATTTGAG GGCCAAAAAATAATTGCAAAATTCAATTAAATTGAAAGTAAGCCCAACTC TATCATTCAGGTAAAAGAAGATTCAACACGTTATGCAGTTGGCATACTTG TCAATAATGATGATTTTGACAAGAACAAGGAGCTTGCATCAACAATGGGA AGTGTTGGCTACCAACATATTCAATTACCGCAAATTGATTCTGTTGTTAC AACTTGTTTTCCTCTTAGAAGTGTTTTGTCCATCTTGGTGGCAATTCAAA GGGTTTACCCAAAACTTAACAACTTCATCAAGGTGATAAAAGTCAAGCAG AGTATCTTTCGAGCACCATTTATTCGGTGACATTATCCGGTTGAAGTTAA ATGATGTAAAGTAGAGAAATGCCGGTACAAAAACTTGAAGGAAAATCAAC TCTATTTATTGCACTGATGCTTGTGAAAAATAATGCTATTGTATTTAGAA TTTCTGGGGTCTTAAGATGCATATAAAACCTAATTAGGACATTAAGAGAG CCGAAATATTCTTCCTCACCCAACCATGGTGGGCAATATTCAATATCACT GTATTATATCGATGAAACTCAATTTCCCAGACCAAAATGGTGATAAGGAA AAGTGCTTGGAAAGAACCCTTTCAACAAGCTTATAAAACTTAATTTCTAG GTAATTATTTTTCATTGTAATTCCTTTTGTTTTTCAGAAAGAGAAACTCC AGGCACACCCATGTACAGAGTATTACCCTCATGGTATGGAAGAAATGCAT TTTATTAACCCTCTGGAAAAGAATGATTCATTTTATGTACCTGAGTATCA CGTGACATATGTGGAATACATTGATTCTAAAGAAGATTGAACTGTAATAG AAACTTAAAGAAATTATCTTCTTGGTAAATAAAAGTTTGCTAGAGAGACA GTGAAATATGAGTTACAGAATTTCAATTTCAATTATAGGAATTATCTAGC GAGAGACAAGAGGGGTGCAAAACTTTTGTAGGAGAGCAGATTTTTATGAC ACAATGATTATCTTTTTATATTATCTATATATTAATAGTGGTAGTCTGTA TGTGTGTTTGTCTGTGTTTTCTACTTTCGTTTTCGCTTTGTTTGTGTTTT AAAATTATGACTTTTAGTCTCTTGCTCCACAAATTTGTTTTATTGGATTC GCACCATTTGCAAAAGATCGGATAGAGCTTGGTTTAGACTTTAAAGTAGG GGCCACTATGTCGTGAAAAAGCTTCCCGTGTGCAGCAGCTTGTGCAAAGG GATTTTATGATTGAGTATTGTTCCTTGAATGTA

Coding sequence (CDS) from alignment at sc0000001:129901..132533-

>TCONS_00000141 ID=TCONS_00000141|Name=TCONS_00000141|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000001:129901..132533- (Clytia hemisphaerica)
AAAGAGAAACTCCAGGCACACCCATGTACAGAGTATTACCCTCATGGTAT
GGAAGAAATGCATTTTATTAACCCTCTGGAAAAGAATGATTCATTTTATG
TACCTGAGTATCACGTGACATATGTGGAATACATTGATTCTAAAGAAGAT
TGAGTAAAAGAAGATTCAACACGTTATGCAGTTGGCATACTTGTCAATAA
TGATGATTTTGACAAGAACAAGGAGCTTGCATCAACAATGGGAAGTGTTG
GCTACCAACATATTCAATTACCGCAAATTGATTCTGTTGTTACAACTTGT
TTTCCTCTTAGAAGTGTTTTGTCCATCTTGGTGGCAATTCAAAGGGTTTA
CCCAAAACTTAACAACTTCATCAAGATGAGTCCATTAATTTACACTTGTC
TTGCTTTTATTTTCATTGTCATTGCATTTTGTTTTTACATTGGAATGTTT
CGTTCAATCAGCATCAAAGTTTCCAAACCACCTTTTCCAGTTGGAGGACA
TTATTTATACAAATTTTACCAAACACCGTATGCTGAAGCCAGAATGGCTT
ATAGAGCTATCAATAAATTCCCCATAAAGAAGACATTTAAATTGGTTGGA
ATTTATTATGATGACCCTGATAAAAAAGAGAAACTCCAGGCACACCCATG
TACAGAGTATTACCCTCATGGTATGGAAGAAATGCATTTTATTAACCCTC
TGGAAAAGAATGATTCATTTTATGTACCTGAGTATCACGTGACATATGTG
GAATACATTGATTCTAAAGAAGATTGAGTAAAAGAAGATTCAACACGTTA
TGCAGTTGGCATACTTGTCAATAATGATGATTTTGACAAGAACAAGGAGC
TTGCATCAACAATGGGAAGTGTTGGCTACCAACATATTCAATTACCGCAA
ATTGATTCTGTTGTTACAACTTGTTTTCCTCTTAGAAGTGTTTTGTCCAT
CTTGGTGGCAATTCAAAGGGTTTACCCAAAACTTAACAACTTCATCAAGA
TGAGTCCATTAATTTACACTTGTCTTGCTTTTATTTTCATTGTCATTGCA
TTTTGTTTTTACATTGGAATGTTTCGTTCAATCAGCATCAAAGTTTCCAA
ACCACCTTTTCCAGTTGGAGGACATTATTTATACAAATTTTACCAAACAC
CGTATGCTGAAGCCAGAATGGCTTATAGAGCTATCAATAAATTCCCCATA
AAGAAGACATTTAAATTGGTTGGAATTTATTATGATGACCCTGATAAAAA
AGAGAAACTCCAGGCACACCCATGTACAGAGTATTACCCTCATGGTATGG
AAGAAATGCATTTTATTAACCCTCTGGAAAAGAATGATTCATTTTATGTA
CCTGAGTATCACGTGACATATGTGGAATACATTGATTCTAAAGAAGATTG
AGTAAAAGAAGATTCAACACGTTATGCAGTTGGCATACTTGTCAATAATG
ATGATTTTGACAAGAACAAGGAGCTTGCATCAACAATGGGAAGTGTTGGC
TACCAACATATTCAATTACCGCAAATTGATTCTGTTGTTACAACTTGTTT
TCCTCTTAGAAGTGTTTTGTCCATCTTGGTGGCAATTCAAAGGGTTTACC
CAAAACTTAACAACTTCATCAAGATGAGTCCATTAATTTACACTTGTCTT
GCTTTTATTTTCATTGTCATTGCATTTTGTTTTTACATTGGAATGTTTCG
TTCAATCAGCATCAAAGTTTCCAAACCACCTTTTCCAGTTGGAGGACATT
ATTTATACAAATTTTACCAAACACCGTATGCTGAAGCCAGAATGGCTTAT
AGAGCTATCAATAAATTCCCCATAAAGAAGACATTTAAATTGGTTGGAAT
TTATTATGATGACCCTGATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000080XLOC_000080Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000141-proteinTCONS_00000141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000141-exon-sc0000001-1575043694:132416..132533TCONS_00000141-exon-sc0000001-1575043694:132416..132533Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1575043694:132084..132363TCONS_00000141-exon-sc0000001-1575043694:132084..132363Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1575043694:130902..131123TCONS_00000141-exon-sc0000001-1575043694:130902..131123Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1575043694:129901..130496TCONS_00000141-exon-sc0000001-1575043694:129901..130496Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1510915933:132416..132533TCONS_00000141-exon-sc0000001-1510915933:132416..132533Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1510915933:132084..132363TCONS_00000141-exon-sc0000001-1510915933:132084..132363Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1510915933:130902..131123TCONS_00000141-exon-sc0000001-1510915933:130902..131123Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1510915933:129901..130496TCONS_00000141-exon-sc0000001-1510915933:129901..130496Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1491911889:132416..132533TCONS_00000141-exon-sc0000001-1491911889:132416..132533Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1491911889:132084..132363TCONS_00000141-exon-sc0000001-1491911889:132084..132363Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1491911889:130902..131123TCONS_00000141-exon-sc0000001-1491911889:130902..131123Clytia hemisphaericaexon
TCONS_00000141-exon-sc0000001-1491911889:129901..130496TCONS_00000141-exon-sc0000001-1491911889:129901..130496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:129901..132533 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.8895 21.3929 13.3637 11.6563 21.0246 14.0645 12.7527 12.4963 11.1002 10.8152 9.83613 10.1309 8.12704 7.67991 9.50847 9.3859 15.3286 13.3137 6.50899 7.44024 10.8147 10.7414 21.7637 20.4619 4.71825 6.63768 16.3293 13.1876 15.9643 12.2376
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011256Reg_factor_effector_dom
Blast
BLAST of TCONS_00000141 vs. Swiss-Prot (Human)
Match: TX264 (Testis-expressed protein 264 OS=Homo sapiens GN=TEX264 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.581e-23
Identity = 64/203 (31.53%), Postives = 97/203 (47.78%), Query Frame = 3
Query:  198 AFCFYIGMFRSISIKVSKPPFPVGGHYLYKFYQTPYAEARMAYRAINKFPIKKTFKLVGIYYDDPDKVKEDSTRYAVGILVNNDDFDKNKELASTMGSVGYQHIQLPQIDSVVTTCFPLRSVLSILVAIQRVYPKLNNFIKKEKLQAHPCTEYYPHGMEEMHFINPLEKNDSFYVPEYHVT------YVEYIDSKED*TVIET 788
            AF  Y G+   + +    PP        YKF+   Y E    +       I    + + +YYD+P  V  D  R AVG +++  +   + EL       G++    P    VVT  FP  ++LSI +A +RV+P L+ +IK+ KL A+P  E Y    +++HF+ PL +   FYVPE   T       VE ID++ D T  +T
Sbjct:   23 AFAGYSGLLAGVEVSAGSPPI-RNVTVAYKFHMGLYGETGRLF--TESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGFKVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQE--DQIHFMCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADT 220          
The following BLAST results are available for this feature:
BLAST of TCONS_00000141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TX2642.581e-2331.53Testis-expressed protein 264 OS=Homo sapiens GN=TE... [more]
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