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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000138 ID=TCONS_00000138|Name=TCONS_00000138|organism=Clytia hemisphaerica|type=transcript|length=1390bp
ACTGGTCTCCAGGGGAGAGTTGGAGAGAGCGCGACACGAGGAGAGTGAAG
CCAGGCACACCGCAACACCGCCCTCCCCCGTTTGTGGCGTTACGTTCAGT
AATTGAAGTTCTGAACTATCCAGGCTAAAATTTCATACAAATTCGACGGT
ACCGACTGATTTATCCTTTACAACTTTGCTGGAGAAGATGGCCGACGGGT
TAGTGATAAGCACATTGTCATCATTATTTACCTTGCTATATCGTTTACCA
CCTTGAGGAAATGGATTACTGCTACAATCGATCAGACTCTATCACACTAT
CCGTTTGGATATTTGGAAGTATTTTCGTCCATTGCTTCTTATGATAACTT
GAATTTGGAATTCAAAGTTTTATCATTGAAAGTCTAATAACGTTCTTTTT
ACGTTATAGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTTGAAGAGAA
GAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAAAGCTCAAG
CAAAAGAAGGCCAACAAAGACAAGCGTCAAGTCATCTTTACACGAGCTGA
AAACTATGTTAAAGAATATAGACAAAAGGAACAAGATGTTATTCGCATGA
AAAGATTGGCCAAGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCAAAA
TTAGCTTTTGTTATCCGAATTAGAGGTATCAACCAAGTCAGTCCAAAAGT
CAAGAAGGCTTTACAGCTTTTACGACTTCGACAAATCAACAATGGAGTCT
TTGTCAGACTCAACAAAGCCTCGATCAATATGTTGAGATTGGTTGAGCCT
TACATTTCCTGGGGATACCCTAACTTGAAGAGTGTTCGTGATCTCATTTA
CAAACGTGGACATGGAAAAGTTGCTCATCAACGTATTCCATTGACTGAAA
ACTCTATCATTGAAAACGCCCTTGGAAAACGTAATATTATCTGTATTGAA
GACTTGATCCATGAAATTTACACTGTCGGCGAAAACTTCAAACAAGCCAA
CAACTTTTTATGGCCCTTCAAACTCAGCTGCCCAACCGGTGGTATGAGAA
AGAAGACCATTCACTTTGTTGAAGGTGGTGATCATGGAAACCGTGAGGAC
TTTATCAATAACTTGATTAAACAAATGAATTAATTTCCATTGAAATACAA
AACGTCGGTCCAAAAATGATTTTCTGAATTGTTGTCTTTTGCATGAGTTT
CtccaaaactgaaaatttcttttgtctttATTTTCATACAGTTTCATAGT
TTTTTACCCCCTCCACATAGAATGCACcatttaaagtctgtccagatata
attggcagtggaaacaagaatgcctgtaacttttgatagtcaattataat
tatggaatttttttttgcttgttttagagaatcaaaagcg Run BLAST on NCBI transcript from alignment at sc0000001:12235..15416- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000138 ID=TCONS_00000138|Name=TCONS_00000138|organism=Clytia hemisphaerica|type=transcript|length=3182bp|location=Sequence derived from alignment at sc0000001:12235..15416- (Clytia hemisphaerica)
ACTGGTCTCCAGGGGAGAGTTGGAGAGAGCGCGACACGAGGAGAGTGAAG
CCAGGCACACCGCAACACCGCCCTCCCCCGTTTGTGGCGTTACGTTCAGT
AATTGAAGTTCTGAACTATCCAGGCTAAAATTTCATACAAATTCGACGGT
ACCGACTGATTTATCCTTTACAACTTTGCTGGAGAAGATGGCCGACGGGT
TAGTGATAAGCACATTGTCATCATTATTTACCTTGCTATATCGTTTACCA
CCTTGAGGAAATGGATTACTGCTACAATCGATCAGACTCTATCACACTAT
CCGTTTGGATATTTGGAAGTATTTTCGTCCATTGCTTCTTATGATAACTT
GAATTTGGAATTCAAAGTTTTATCATTGAAAGTCTAATAACGTTCTTTTT
ACGTTATAGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTTGAAGAGAA
GAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAAAGCTCAAG
CAAAAGAAGGTTTGTCAAAATTAGCTTCGTTCACTTTTCTTGTAATTTGC
AAAATGGGCAAAACCAAGTTTTTCTTCAAACTTCTAAGCTAATAGTATAA
TTTTGACTATTAGCTTAGTTGCATACAAACTCTCGCCCTTACTGAAAACT
CCCAAGGCATTAAAAGTATTTTGTTATCTAAGGCCAAAATAATAACATGG
ACTGATAAGAAAGAAAATGGAAAGAAAGAAACAAGAAGAAAATTAATTCC
CGCTTTGATGTTATTATCAAATCAAAAGGACCAGTCATGCCGAAATTCCT
TTCCACTCGTCAGCAATCTACTTTTTATAAATAGAAAAACTAGATTGTAA
GGAAGATACTAAAAAAAGATAGCTGTTTTCTTAGAAGACTACATTGTATC
TTTTTGAAGATAACTGTTGTGTTTACAAAATATTTATTTCTCTTTTGGTA
CGTTATTTCCTCCTCAACTTTTAAAACAGAGCTCTGACCTTTATAAAAAA
GAAGGACAATTTAGTGAGATCCAAGGACTGAGTTAACTGTCTCCCATATA
TTCTGCCCAAGTGAACCACTCCACAAATAACAAATGAATTTTAGCCCCTT
ATACAAATATCCTGTAACAGTTTTTGTCAATAAGTCAAAAATGTACAAAT
CTATCCTCATTTGAATTTTGGTAACATTTTATACCAGAAATGCACCAGGC
TTGTATCAAAGGTTTTGTTTTGATTGAAAAGTCTGAATGATGGTGATGTA
GTAAAAACAGGTGCAACAAGGTTTTGANCGTACAAATCTATCCTCATTTG
AATTTTGGTAACATTTTATACTAGAAATGCACCAGGCTTGTATCAAAGGT
TTTGTTTTGATTGAAAAGTCTGAATGATGGTGATGTAGTAAAAACAGGTG
CAACAAGGTTTTGAAAAAAAAAACATTGAGTAAAAAAGAATTCCTCAAAC
AAAGGGATTTCTACTGATACTCTTTTGAATGTTTTTATGTTTATAATAAA
CAAAACGTTTTCGATCTTGTAATCAAAACATTCGATTGTTAATTTGCTCA
AAATCAAGTTTGCTATTTTTTTGTTTACAGAATCATTAAAATGTGAGCTC
ACATCTCATAAAATCTTTGATTTTTCACTATGTTTCTCCTTTTATTCCTG
TAGAAAACCTTTTAAACCTCATTATCTCTTGTTCATATTTTCAATAATAA
TGCTGTGAAGATTTCATTTTTTAAATTCCCTACTGTTACTTAATCAGGCC
AACAAAGACAAGCGTCAAGTCATCTTTACACGAGCTGAAAACTATGTTAA
AGAATATAGACAAAAGGAACAAGATGTTATTCGCATGAAAAGATTGGCCA
AGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCAAAATTAGCTTTTGTT
ATCCGAATTAGAGGGTAAGTAATTTGGATTGAGAAATATGTCAAAACCAA
CATTTTAAATCCTCAGATCTTGTTGTTCCCGACTTTAAGGAAGGAAAAAT
GTTATGGTTTCTGAGTACAATGTCAAATTTCATGAACTGTATCCCTTTGA
TACTTATGCTCTCTCCTCAATTGTGTTGGTCATTCTGGTTTAACTGATAG
TGTTACATTGAATGAACCAATGATTATAAAGCTGTTCACATTCTGATTTG
TGTGATGATAATCACTTCCATGGCTATGAGGTTCTATTCATGTTCTATGA
AATTTTAGCTGGACGAGTACTTATTTATTCCAATTAATTTGAATTCCTCT
TCTCTTCAGTATCAACCAAGTCAGTCCAAAAGTCAAGAAGGCTTTACAGC
TTTTACGACTTCGACAAATCAACAATGGAGTCTTTGTCAGACTCAACAAA
GCCTCGATCAATATGTTGAGATTGGTTGAGCCTTACATTTCCTGGGGGTA
AGTCAAATGATAACCTTTATTTAACATTGTTCCTTGCTTACTTTAGTTTA
GTTTGATTGAAATGCAAGGATGAAACAACGCGGTATTGATATAACTCATG
ATAGTTGACCAATTGTCTGGCTGAGCATTTCTCTACAGAAAATGTGTTTG
AAATTATTTAGAGTTGTCTACCTTTCAATAATTGTTGGTCACTTTTATAT
TCGTAGATACCCTAACTTGAAGAGTGTTCGTGATCTCATTTACAAACGTG
GACATGGAAAAGTTGCTCATCAACGTATTCCATTGACTGAAAACTCTATC
ATTGAAAACGCCCTTGGAAAACGTAATATTATCTGTATTGAAGACTTGAT
CCATGAAATTTACACTGTCGGCGAAAACTTCAAACAAGCCAACAACTTTT
TATGGCCCTTCAAACTCAGCTGCCCAACCGGTGGTATGAGAAAGAAGACC
ATTCACTTTGTTGAAGGTGGTGATCATGGAAACCGTGAGGACTTTATCAA
TAACTTGATTAAACAAATGAATTAATTTCCATTGAAATACAAAACGTCGG
TCCAAAAATGATTTTCTGAATTGTTGTCTTTTGCATGAGTTTCTCCAAAA
CTGAAAATTTCTTTTGTCTTTATTTTCATACAGTTTCATAGTTTTTTACC
CCCTCCACATAGAATGCACCATTTAAAGTCTGTCCAGATATAATTGGCAG
TGGAAACAAGAATGCCTGTAACTTTTGATAGTCAATTATAATTATGGAAT
TTTTTTTTGCTTGTTTTAGAGAATCAAAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000138-exon-sc0000001-1575043694:14908..15416 | TCONS_00000138-exon-sc0000001-1575043694:14908..15416 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1575043694:13503..13669 | TCONS_00000138-exon-sc0000001-1575043694:13503..13669 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1575043694:13020..13157 | TCONS_00000138-exon-sc0000001-1575043694:13020..13157 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1575043694:12235..12810 | TCONS_00000138-exon-sc0000001-1575043694:12235..12810 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1510915933:14908..15416 | TCONS_00000138-exon-sc0000001-1510915933:14908..15416 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1510915933:13503..13669 | TCONS_00000138-exon-sc0000001-1510915933:13503..13669 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1510915933:13020..13157 | TCONS_00000138-exon-sc0000001-1510915933:13020..13157 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1510915933:12235..12810 | TCONS_00000138-exon-sc0000001-1510915933:12235..12810 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1491911889:12235..12810 | TCONS_00000138-exon-sc0000001-1491911889:12235..12810 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1491911889:13020..13157 | TCONS_00000138-exon-sc0000001-1491911889:13020..13157 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1491911889:13503..13669 | TCONS_00000138-exon-sc0000001-1491911889:13503..13669 | Clytia hemisphaerica | exon |
| TCONS_00000138-exon-sc0000001-1491911889:14908..15416 | TCONS_00000138-exon-sc0000001-1491911889:14908..15416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:12235..15416 - |
Blast
BLAST of TCONS_00000138 vs. Swiss-Prot (Human)
Match: RL7 (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 2.038e-112 Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 3
Query: 411 KKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRAENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPKVKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLIYKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQANNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN 1130
K++P VPETL K+R+ +++ R K QK K +R++I+ +A++Y KEYRQ + IRM R+A+K GNFYVPAE KLAFVIRIRGIN VSPKV+K LQLLRLRQI NG FV+LNKASINMLR+VEPYI+WGYPNLKSV +LIYKRG+GK+ +RI LT+N++I +LGK IIC+EDLIHEIYTVG+ FK+ANNFLWPFKLS P GGM+KKT HFVEGGD GNRED IN LI++MN
Sbjct: 9 KEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248
The following BLAST results are available for this feature:
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