Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000138
Unique NameTCONS_00000138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000138 ID=TCONS_00000138|Name=TCONS_00000138|organism=Clytia hemisphaerica|type=transcript|length=1390bp
ACTGGTCTCCAGGGGAGAGTTGGAGAGAGCGCGACACGAGGAGAGTGAAG
CCAGGCACACCGCAACACCGCCCTCCCCCGTTTGTGGCGTTACGTTCAGT
AATTGAAGTTCTGAACTATCCAGGCTAAAATTTCATACAAATTCGACGGT
ACCGACTGATTTATCCTTTACAACTTTGCTGGAGAAGATGGCCGACGGGT
TAGTGATAAGCACATTGTCATCATTATTTACCTTGCTATATCGTTTACCA
CCTTGAGGAAATGGATTACTGCTACAATCGATCAGACTCTATCACACTAT
CCGTTTGGATATTTGGAAGTATTTTCGTCCATTGCTTCTTATGATAACTT
GAATTTGGAATTCAAAGTTTTATCATTGAAAGTCTAATAACGTTCTTTTT
ACGTTATAGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTTGAAGAGAA
GAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAAAGCTCAAG
CAAAAGAAGGCCAACAAAGACAAGCGTCAAGTCATCTTTACACGAGCTGA
AAACTATGTTAAAGAATATAGACAAAAGGAACAAGATGTTATTCGCATGA
AAAGATTGGCCAAGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCAAAA
TTAGCTTTTGTTATCCGAATTAGAGGTATCAACCAAGTCAGTCCAAAAGT
CAAGAAGGCTTTACAGCTTTTACGACTTCGACAAATCAACAATGGAGTCT
TTGTCAGACTCAACAAAGCCTCGATCAATATGTTGAGATTGGTTGAGCCT
TACATTTCCTGGGGATACCCTAACTTGAAGAGTGTTCGTGATCTCATTTA
CAAACGTGGACATGGAAAAGTTGCTCATCAACGTATTCCATTGACTGAAA
ACTCTATCATTGAAAACGCCCTTGGAAAACGTAATATTATCTGTATTGAA
GACTTGATCCATGAAATTTACACTGTCGGCGAAAACTTCAAACAAGCCAA
CAACTTTTTATGGCCCTTCAAACTCAGCTGCCCAACCGGTGGTATGAGAA
AGAAGACCATTCACTTTGTTGAAGGTGGTGATCATGGAAACCGTGAGGAC
TTTATCAATAACTTGATTAAACAAATGAATTAATTTCCATTGAAATACAA
AACGTCGGTCCAAAAATGATTTTCTGAATTGTTGTCTTTTGCATGAGTTT
CtccaaaactgaaaatttcttttgtctttATTTTCATACAGTTTCATAGT
TTTTTACCCCCTCCACATAGAATGCACcatttaaagtctgtccagatata
attggcagtggaaacaagaatgcctgtaacttttgatagtcaattataat
tatggaatttttttttgcttgttttagagaatcaaaagcg
Run BLAST on NCBI

transcript from alignment at sc0000001:12235..15416-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000138 ID=TCONS_00000138|Name=TCONS_00000138|organism=Clytia hemisphaerica|type=transcript|length=3182bp|location=Sequence derived from alignment at sc0000001:12235..15416- (Clytia hemisphaerica)
ACTGGTCTCCAGGGGAGAGTTGGAGAGAGCGCGACACGAGGAGAGTGAAG CCAGGCACACCGCAACACCGCCCTCCCCCGTTTGTGGCGTTACGTTCAGT AATTGAAGTTCTGAACTATCCAGGCTAAAATTTCATACAAATTCGACGGT ACCGACTGATTTATCCTTTACAACTTTGCTGGAGAAGATGGCCGACGGGT TAGTGATAAGCACATTGTCATCATTATTTACCTTGCTATATCGTTTACCA CCTTGAGGAAATGGATTACTGCTACAATCGATCAGACTCTATCACACTAT CCGTTTGGATATTTGGAAGTATTTTCGTCCATTGCTTCTTATGATAACTT GAATTTGGAATTCAAAGTTTTATCATTGAAAGTCTAATAACGTTCTTTTT ACGTTATAGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTTGAAGAGAA GAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAAAGCTCAAG CAAAAGAAGGTTTGTCAAAATTAGCTTCGTTCACTTTTCTTGTAATTTGC AAAATGGGCAAAACCAAGTTTTTCTTCAAACTTCTAAGCTAATAGTATAA TTTTGACTATTAGCTTAGTTGCATACAAACTCTCGCCCTTACTGAAAACT CCCAAGGCATTAAAAGTATTTTGTTATCTAAGGCCAAAATAATAACATGG ACTGATAAGAAAGAAAATGGAAAGAAAGAAACAAGAAGAAAATTAATTCC CGCTTTGATGTTATTATCAAATCAAAAGGACCAGTCATGCCGAAATTCCT TTCCACTCGTCAGCAATCTACTTTTTATAAATAGAAAAACTAGATTGTAA GGAAGATACTAAAAAAAGATAGCTGTTTTCTTAGAAGACTACATTGTATC TTTTTGAAGATAACTGTTGTGTTTACAAAATATTTATTTCTCTTTTGGTA CGTTATTTCCTCCTCAACTTTTAAAACAGAGCTCTGACCTTTATAAAAAA GAAGGACAATTTAGTGAGATCCAAGGACTGAGTTAACTGTCTCCCATATA TTCTGCCCAAGTGAACCACTCCACAAATAACAAATGAATTTTAGCCCCTT ATACAAATATCCTGTAACAGTTTTTGTCAATAAGTCAAAAATGTACAAAT CTATCCTCATTTGAATTTTGGTAACATTTTATACCAGAAATGCACCAGGC TTGTATCAAAGGTTTTGTTTTGATTGAAAAGTCTGAATGATGGTGATGTA GTAAAAACAGGTGCAACAAGGTTTTGANCGTACAAATCTATCCTCATTTG AATTTTGGTAACATTTTATACTAGAAATGCACCAGGCTTGTATCAAAGGT TTTGTTTTGATTGAAAAGTCTGAATGATGGTGATGTAGTAAAAACAGGTG CAACAAGGTTTTGAAAAAAAAAACATTGAGTAAAAAAGAATTCCTCAAAC AAAGGGATTTCTACTGATACTCTTTTGAATGTTTTTATGTTTATAATAAA CAAAACGTTTTCGATCTTGTAATCAAAACATTCGATTGTTAATTTGCTCA AAATCAAGTTTGCTATTTTTTTGTTTACAGAATCATTAAAATGTGAGCTC ACATCTCATAAAATCTTTGATTTTTCACTATGTTTCTCCTTTTATTCCTG TAGAAAACCTTTTAAACCTCATTATCTCTTGTTCATATTTTCAATAATAA TGCTGTGAAGATTTCATTTTTTAAATTCCCTACTGTTACTTAATCAGGCC AACAAAGACAAGCGTCAAGTCATCTTTACACGAGCTGAAAACTATGTTAA AGAATATAGACAAAAGGAACAAGATGTTATTCGCATGAAAAGATTGGCCA AGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCAAAATTAGCTTTTGTT ATCCGAATTAGAGGGTAAGTAATTTGGATTGAGAAATATGTCAAAACCAA CATTTTAAATCCTCAGATCTTGTTGTTCCCGACTTTAAGGAAGGAAAAAT GTTATGGTTTCTGAGTACAATGTCAAATTTCATGAACTGTATCCCTTTGA TACTTATGCTCTCTCCTCAATTGTGTTGGTCATTCTGGTTTAACTGATAG TGTTACATTGAATGAACCAATGATTATAAAGCTGTTCACATTCTGATTTG TGTGATGATAATCACTTCCATGGCTATGAGGTTCTATTCATGTTCTATGA AATTTTAGCTGGACGAGTACTTATTTATTCCAATTAATTTGAATTCCTCT TCTCTTCAGTATCAACCAAGTCAGTCCAAAAGTCAAGAAGGCTTTACAGC TTTTACGACTTCGACAAATCAACAATGGAGTCTTTGTCAGACTCAACAAA GCCTCGATCAATATGTTGAGATTGGTTGAGCCTTACATTTCCTGGGGGTA AGTCAAATGATAACCTTTATTTAACATTGTTCCTTGCTTACTTTAGTTTA GTTTGATTGAAATGCAAGGATGAAACAACGCGGTATTGATATAACTCATG ATAGTTGACCAATTGTCTGGCTGAGCATTTCTCTACAGAAAATGTGTTTG AAATTATTTAGAGTTGTCTACCTTTCAATAATTGTTGGTCACTTTTATAT TCGTAGATACCCTAACTTGAAGAGTGTTCGTGATCTCATTTACAAACGTG GACATGGAAAAGTTGCTCATCAACGTATTCCATTGACTGAAAACTCTATC ATTGAAAACGCCCTTGGAAAACGTAATATTATCTGTATTGAAGACTTGAT CCATGAAATTTACACTGTCGGCGAAAACTTCAAACAAGCCAACAACTTTT TATGGCCCTTCAAACTCAGCTGCCCAACCGGTGGTATGAGAAAGAAGACC ATTCACTTTGTTGAAGGTGGTGATCATGGAAACCGTGAGGACTTTATCAA TAACTTGATTAAACAAATGAATTAATTTCCATTGAAATACAAAACGTCGG TCCAAAAATGATTTTCTGAATTGTTGTCTTTTGCATGAGTTTCTCCAAAA CTGAAAATTTCTTTTGTCTTTATTTTCATACAGTTTCATAGTTTTTTACC CCCTCCACATAGAATGCACCATTTAAAGTCTGTCCAGATATAATTGGCAG TGGAAACAAGAATGCCTGTAACTTTTGATAGTCAATTATAATTATGGAAT TTTTTTTTGCTTGTTTTAGAGAATCAAAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000078XLOC_000078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000138-exon-sc0000001-1575043694:14908..15416TCONS_00000138-exon-sc0000001-1575043694:14908..15416Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1575043694:13503..13669TCONS_00000138-exon-sc0000001-1575043694:13503..13669Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1575043694:13020..13157TCONS_00000138-exon-sc0000001-1575043694:13020..13157Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1575043694:12235..12810TCONS_00000138-exon-sc0000001-1575043694:12235..12810Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1510915933:14908..15416TCONS_00000138-exon-sc0000001-1510915933:14908..15416Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1510915933:13503..13669TCONS_00000138-exon-sc0000001-1510915933:13503..13669Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1510915933:13020..13157TCONS_00000138-exon-sc0000001-1510915933:13020..13157Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1510915933:12235..12810TCONS_00000138-exon-sc0000001-1510915933:12235..12810Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1491911889:12235..12810TCONS_00000138-exon-sc0000001-1491911889:12235..12810Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1491911889:13020..13157TCONS_00000138-exon-sc0000001-1491911889:13020..13157Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1491911889:13503..13669TCONS_00000138-exon-sc0000001-1491911889:13503..13669Clytia hemisphaericaexon
TCONS_00000138-exon-sc0000001-1491911889:14908..15416TCONS_00000138-exon-sc0000001-1491911889:14908..15416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:12235..15416 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.8189 25.4913 9.46594 10.4667 61.1849 44.7978 27.1336 28.0901 20.0609 29.09 29.7174 23.1345 57.6588 74.7433 42.7908 45.5095 35.1684 45.3788 32.7054 28.0787 46.1718 42.0981 66.7469 68.6517 30.6639 41.5651 24.6594 28.1092 34.1253 60.8388
Blast
BLAST of TCONS_00000138 vs. Swiss-Prot (Human)
Match: RL7 (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.038e-112
Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 3
Query:  411 KKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRAENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPKVKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLIYKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQANNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN 1130
            K++P VPETL K+R+   +++  R   K  QK   K +R++I+ +A++Y KEYRQ  +  IRM R+A+K GNFYVPAE KLAFVIRIRGIN VSPKV+K LQLLRLRQI NG FV+LNKASINMLR+VEPYI+WGYPNLKSV +LIYKRG+GK+  +RI LT+N++I  +LGK  IIC+EDLIHEIYTVG+ FK+ANNFLWPFKLS P GGM+KKT HFVEGGD GNRED IN LI++MN
Sbjct:    9 KEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
The following BLAST results are available for this feature:
BLAST of TCONS_00000138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL72.038e-11267.0860S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
back to top