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TCONS_00000136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000136
Unique NameTCONS_00000136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000136 ID=TCONS_00000136|Name=TCONS_00000136|organism=Clytia hemisphaerica|type=transcript|length=527bp
TGCAAGCAGCGGTCTGTACCAAGGTAGCGTGGCTTGACTCGAACTGGAAA
CACCAGGTTGTCCTCAGTCGCAAAACTTGAAGCAGATTTCAAAGGAATTC
GGATGTAGATAGAATCTTACTGTTGCAATCGAAGTCTTTGCAGATAGAGT
CGAAGCAGTTGTACCGACGTGCAAGCAGCGGTCTGTACCAAGGTAGCGTG
GCTCGACTCGAATCCAACCAATCTCCGTTGACCAAACCAANNTTGATCCA
ACAACCAGATCTCCTTTGATCCAAACCAAGAGTCGAAGCAGTTGTCCCGA
CGTGCAAGCAGCGGTCTGGACCAAGGTAACGTGGCTTGACTCGAACCAAC
CagagaataagaaaatataatcTTACTCTTTAACAAGAAAGCAGCATTCT
TCTTTCATCATTATGCAGCTagtaattttgaaatctttatgtAGAGAATG
AGTGTTGTGAGGTTGTTCAATGATTTGATATAAGTTTCTTCTGttaaaaa
accatttcaaaatgTGGCGTGAGCTAN
Run BLAST on NCBI

transcript from alignment at sc0000001:2858767..2859594+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000136 ID=TCONS_00000136|Name=TCONS_00000136|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0000001:2858767..2859594+ (Clytia hemisphaerica)
TGCAAGCAGCGGTCTGTACCAAGGTAGCGTGGTTTGACTCAAACTGAAAA CACCAGGTTGTCCTCAGTCGCAAAACTTGAAGCAGATTTCAAAGGAATTC GGATGTAGATAGAGTCTTACTGTTGCAATCGAAGTCNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNAAGCAGCGGTCTGTACCAAGGTAGCGTGGCTTGACTCGAACTGGAA ACACCAGGTTGTCCTCAGTCGCAAAACTTGAAGCAGATTTCAAAGGAATT CGGATGTAGATAGAATCTTACTGTTGCAATCGAAGTCTTTGCAGATAGAG TCGAAGCAGTTGTACCGACGTGCAAGCAGCGGTCTGTACCAAGGTAGCGT GGCTCGACTCGAATCCAACCAATCTCCGTTGACCAAACCAANNTTGATCC AACAACCAGATCTCCTTTGATCCAAACCAAGAGTCGAAGCAGTTGTCCCG ACGTGCAAGCAGCGGTCTGGACCAAGGTAACGTGGCTTGACTCGAACCAA CCagagaataagaaaatataatcTTACTCTTTAACAAGAAAGCAGCATTC TTCTTTCATCATTATGCAGCTagtaattttgaaatctttatgtAGAGAAT GAGTGTTGTGAGGTTGTTCAATGATTTGATATAAGTTTCTTCTGttaaaa aaccatttcaaaatgTGGCGTGAGCTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000076XLOC_000076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000136-exon-sc0000001-1491911889:2858767..2858789TCONS_00000136-exon-sc0000001-1491911889:2858767..2858789Clytia hemisphaericaexon
TCONS_00000136-exon-sc0000001-1510915933:2858767..2858789TCONS_00000136-exon-sc0000001-1510915933:2858767..2858789Clytia hemisphaericaexon
TCONS_00000136-exon-sc0000001-1575043694:2858767..2858789TCONS_00000136-exon-sc0000001-1575043694:2858767..2858789Clytia hemisphaericaexon
TCONS_00000136-exon-sc0000001-1491911889:2859091..2859594TCONS_00000136-exon-sc0000001-1491911889:2859091..2859594Clytia hemisphaericaexon
TCONS_00000136-exon-sc0000001-1510915933:2859091..2859594TCONS_00000136-exon-sc0000001-1510915933:2859091..2859594Clytia hemisphaericaexon
TCONS_00000136-exon-sc0000001-1575043694:2859091..2859594TCONS_00000136-exon-sc0000001-1575043694:2859091..2859594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2858767..2859594 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.624822 0.12632 0 0.150452 0.152335 0 0.10846 0.232181 0 0 0 0 0.986732 0.0649876 0 0.165893 0.0959011 0.355789 0.312129 0.651591 0.104583 0.251803 0.707461 0 0 0.517847 0.163262 0.269392 1.28033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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