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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000135 ID=TCONS_00000135|Name=TCONS_00000135|organism=Clytia hemisphaerica|type=transcript|length=839bp
AGAATCATCGAGTCGTACAATGAGCGAATTCTGGTACGACTGCCATTCAT
CTTCATGCTTTCCTCAATCAAGTTGATTCGTTTGGTTATTGAGCCTTTCT
TTCCTCCTCGTTTTCTGCGAAGACTCGCTATCTTCAGATCCACAGACATC
TGGTCTCCAGTTTCACTAGTGACAGACATCGTTTGGTGGTTGAATGTGAG
CGGTTGATTTTGTCAGCGACGATcgaagttgaaagtgtgaatgGAGCCTA
ACCAACAAGCTCTCTGTTGATGTGTTGACTTGAAAGCTAGAGTCGAATCG
GTTGTACCGACGTGCAAGCAGCGGTCTGTACCAAGGTAGCGTGGCTTGAC
TCGAACTGGAAACACCAGGTTGTCCTCAGTCGCAAAACTTGAAGCAGATT
TCAAAGGAATTCGGATGTAGATAGAATCTTACTGTTGCAATCGAAGTCTT
TGCAGATAGAGTCGAAGCAGTTGTACCGACGTGCAAGCAGCGGTCTGTAC
CAAGGTAGCGTGGCTCGACTCGAATCCAACCAATCTCCGTTGACCAAACC
AANNTTGATCCAACAACCAGATCTCCTTTGATCCAAACCAAGAGTCGAAG
CAGTTGTCCCGACGTGCAAGCAGCGGTCTGGACCAAGGTAACGTGGCTTG
ACTCGAACCAACCagagaataagaaaatataatcTTACTCTTTAACAAGA
AAGCAGCATTCTTCTTTCATCATTATGCAGCTagtaattttgaaatcttt
atgtAGAGAATGAGTGTTGTGAGGTTGTTCAATGATTTGATATAAGTTTC
TTCTGttaaaaaaccatttcaaaatgTGGCGTGAGCTAN Run BLAST on NCBI transcript from alignment at sc0000001:2857437..2859594+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000135 ID=TCONS_00000135|Name=TCONS_00000135|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at sc0000001:2857437..2859594+ (Clytia hemisphaerica)
AGAATCATCGAGTCGTACAATGAGCGAATTCTGGTACGACTGCCATTCAT
CTTCATGCTTTCCTCAATCAAGTTGATTCGTTTGGTTATTGAGCCTTTCT
TTCCTCCTCGTTTTCTGCGAAGACTCGCTATCTTCAGATCCACAGACATC
TGGTCTCCAGTTTCACTAGTGACAGACATCGTTTGGTGGTTGAATGTGAG
CGGTTGATTTTGTCAGCGACGATcgaagttgaaagtgtgaatgGAGCCTA
ACCAACAAGCTCTCTGTTGATGTGTTGACTTGAAAGCTAGAGTCGAATCG
GTTGTACCGACGTGCAAGCAGCGGTCTGTACCAAGGTAACGTTAGCTTGA
CTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGACTTGACAGCTCGA
AGTTGAGGATGTGAACAGAGCCTTGCCAATGAAGCTCAGTTGAGGATGAC
GACTTGACGTGGATAggcagcgtcgaagcagttgtgttgacgacgtgact
tttgatagacagcgtcgaagcagttgagttgacgacgtgacttttgatag
acagcgtcgaagcagttgagttgacgacgtgacgtttgatagacagcgtc
gaagcagttgagttgacgacgtgacttttgatagacagcgtcgaagcagt
tgagttgacgacgtgacgtttgacagacagtgtcgaagcagatgagttga
acacttcacaaacaaatttaaagtgtgaaaagagccttaccaacgaagct
cagttgtggttgacgacgtgacttttgatagacagcgtcgaagaaGATGA
Gttcacaaaacaaagttgaaagtgtgaacagagccttaccaacgaagctc
agttgagttgacgacgtggatagacagcgtcgaggcagttgagttgacga
cgtgacgtttgacagACAGTGTCGGAGCAGTTGAGTTGTCGACGTGACgt
gtgacagacagcgtcgaagcagatgtgttgaacacttcacaaaacaaagt
taaagtgtgaaaagagccttaccaatgaagctcagttgaggttgacgacg
tgacgtgtgacagacagcgtcgaagcagatgtgttgaacacttcacaaaa
caaagttaaagtgtgaaaagagccttaccaatgaagctcagttgaggttg
acgacgtgacgtgtgacagacagcgtcgaagcagatgagctgaacacttc
acaaaacaaagttgaaagtgtgaacagagccttaccaacgaaactcagtt
gagttgacgacgtgacgtttgatagacagcgtcgaagcagttgagtctTT
GCAGATAGAGTCGAAGCAGTTGTACCGACGTGCAAGCAGCGGTCTGTACC
AAGGTAGCGTGGTTTGACTCAAACTGAAAACACCAGGTTGTCCTCAGTCG
CAAAACTTGAAGCAGATTTCAAAGGAATTCGGATGTAGATAGAGTCTTAC
TGTTGCAATCGAAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCAGCGGTCTGTAC
CAAGGTAGCGTGGCTTGACTCGAACTGGAAACACCAGGTTGTCCTCAGTC
GCAAAACTTGAAGCAGATTTCAAAGGAATTCGGATGTAGATAGAATCTTA
CTGTTGCAATCGAAGTCTTTGCAGATAGAGTCGAAGCAGTTGTACCGACG
TGCAAGCAGCGGTCTGTACCAAGGTAGCGTGGCTCGACTCGAATCCAACC
AATCTCCGTTGACCAAACCAANNTTGATCCAACAACCAGATCTCCTTTGA
TCCAAACCAAGAGTCGAAGCAGTTGTCCCGACGTGCAAGCAGCGGTCTGG
ACCAAGGTAACGTGGCTTGACTCGAACCAACCagagaataagaaaatata
atcTTACTCTTTAACAAGAAAGCAGCATTCTTCTTTCATCATTATGCAGC
TagtaattttgaaatctttatgtAGAGAATGAGTGTTGTGAGGTTGTTCA
ATGATTTGATATAAGTTTCTTCTGttaaaaaaccatttcaaaatgTGGCG
TGAGCTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000135-exon-sc0000001-1491911889:2857437..2857771 | TCONS_00000135-exon-sc0000001-1491911889:2857437..2857771 | Clytia hemisphaerica | exon |
| TCONS_00000135-exon-sc0000001-1510915933:2857437..2857771 | TCONS_00000135-exon-sc0000001-1510915933:2857437..2857771 | Clytia hemisphaerica | exon |
| TCONS_00000135-exon-sc0000001-1575043694:2857437..2857771 | TCONS_00000135-exon-sc0000001-1575043694:2857437..2857771 | Clytia hemisphaerica | exon |
| TCONS_00000135-exon-sc0000001-1491911889:2859091..2859594 | TCONS_00000135-exon-sc0000001-1491911889:2859091..2859594 | Clytia hemisphaerica | exon |
| TCONS_00000135-exon-sc0000001-1510915933:2859091..2859594 | TCONS_00000135-exon-sc0000001-1510915933:2859091..2859594 | Clytia hemisphaerica | exon |
| TCONS_00000135-exon-sc0000001-1575043694:2859091..2859594 | TCONS_00000135-exon-sc0000001-1575043694:2859091..2859594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2857437..2859594 + |
Blast
The following BLAST results are available for this feature:
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