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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000129 ID=TCONS_00000129|Name=TCONS_00000129|organism=Clytia hemisphaerica|type=transcript|length=392bp
GAAGCAAACGGTTCAAAAGTGTTCAACCTTATTGCGACAGACAAGACCAT
AGTAGCCACCCCTTTTCAATCGACGACGGCGCATTATGGGCAATGCTTTA
GTATCTGCTCCTTAAATCTTAAATGTCTTTCTTTCGACCATTCCTACACA
TCTGACATTGGAGAATGCAGTTTCTATGACGTTGGAGTAGCAGTTTTTAA
CCAGACAACTAAATTCCAAGAAAAAATCGGTAGCAAGTATCATTCCATTC
ATATGGCCACTGATTGTGCTGACTGGTACAGACTGGGTCACCGTGAAAAT
GGCGTCTATGAGGTTCATCTGTTGTCTAAGTATAAGCGCCGTGTTTATTG
TCATATGGGGGCGGCTGAGGGCGGTTGGATGGCCTTTCAACG Run BLAST on NCBI protein sequence of TCONS_00000129-protein >TCONS_00000129-protein ID=TCONS_00000129-protein|Name=TCONS_00000129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
EANGSKVFNLIATDKTIVATPFQSTTAHYGQCFSICSLNLKCLSFDHSYT
SDIGECSFYDVGVAVFNQTTKFQEKIGSKYHSIHMATDCADWYRLGHREN
GVYEVHLLSKYKRRVYCHMGAAEGGWMAFQ Run BLAST on NCBI transcript from alignment at sc0000001:2656579..2666332+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000129 ID=TCONS_00000129|Name=TCONS_00000129|organism=Clytia hemisphaerica|type=transcript|length=9754bp|location=Sequence derived from alignment at sc0000001:2656579..2666332+ (Clytia hemisphaerica)
GAAGCAAACGGTTCAAAAGTGTTCAACCTTATTGCGACAGACAAGACCAT
AGTAGCCACCCCTTTTCAATCGACGACGGCGCATTATGGGCAATGCTTTA
GTATCTGCTCCTTAAATCTTAAATGTCTTTCTTTCGACCATTCCTACACA
TCTGACATTGGAGAATGTAGTTTCTATGATTTGTATCAGACAAATAATTT
GAAGGAAAAGCCAGGGGTTAAGTTTTATTCCCAAACTTTACTTACTGCCA
CTGATTGCGTTGATTGGTTTAATCTCGGCTACCGTAAAAATGGCATCTAT
GAAGTCAATTTGTTGGGAAAATACATGCGCCGTGTTTATTGTCATATGCA
GGCGGCCGAGGGCGGTTGGATGGCCTTTCAACGTCGATTTGATGGTAAGT
TTTCGTAAAACCCGGGACACCCTCGTAAAATTCACTGAAAATGCTGAAGG
ACTATTACAATATAGTATTAGCATTAAATAATTGGTATTAAAAGTGTATT
TCAATAGCAGAAATGGAAAGTTTCGTAGATACAGATACAAAATCTCCAGG
AAATGTATCCTCAAAATAGAGACCTTAGGAAACCATTACAACTACGCGGA
TAGGTTCTATCGCGAAGTTTAACCTTATTCAAGAAAAGGGAAAGGTATCG
CTAGAAGCGTCGGAAGATATTAATCAGGTTCAGCCTCGCAAAAAATCCTT
CCCCCAGTGTCTTTTGATTGTCAAGGTAGACAATGACATTCTAGAACTCC
CTTTCCgagaaggggggggggcacgcagttactacaagacagtatgacac
ttactaccgtggtggtactgtattcagaagttatgaaaacagttactaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcaaaatttttcacaaaaa
atgattttttttgtgaaaaaattctttgttaaaaaaaatatttttgttat
aaatggacgaaaaaaaatttttctcagacccaactttccctaatttatca
ttaaaatgttctcaacagctgttaaccaagtaaattaaaagaaaatctag
cacaaaaatggctttaggttgaaaaataatcgcaatttagggtaatttcg
agcatgtttttgatgatatcactcaaaaacaggggtggtacctggaaatc
tttctgaaaacagttactaccaaggtgaaGTAACTGCAAAAGGTGGTGGT
cctaaaaaaagtgttgaaaaagcactaactacacatcatgtcttgtagta
actgcgtgcccccccccctgttccGAGACGTTAAAGATCGTATAATTGAG
TGTGAAGGCAGTAGAGGCTTTAAGACTCGAATACGCACGAGGAACACAAA
TTTATTCgggttaaggaaatttcgagttatggagtaaggtttataaagtA
TTGTTAAATGAAGGGACCATAaatcttgttcgagttaagtagacttataa
aggttcgagttaaagagactccactttACTAGACACCATGGCATTCTAGA
AGTGTCTGTTTATTTCAACTCCCTTTCTGAGAGGTAAGAGGTCGTATAAT
ACAGTGAAGTCtacataactcgaacacgcacgaaCAATATAGAGATATAC
TTTTTGTTTATCCAACACACAGGgagtgtcaatttttttggtcGAAATTG
GGAAGAATTCAAGAATGGTTTCGGGAATCCCGAGGGCGAATATTATCTTG
GAAACGAACTTTTACATTTGCTGACAACCTCTGAAGACTATGATTATTTA
GTAGAAGCACGAAGGCATGAGTCTGGGACTAGTGCTAGAAGAAAGTTGAT
CCACAAGGTCCACATCGAGAGCGAAGAAGAAGATTACAAGATCCAATACA
GATTGGAGGATATTAGTAATGTATTAcaatttatgtttttatttaaacCG
TCGATCAAGTTAATTCCAATTAAGGGAACCAGAAGCCTCAAACACActtt
caaaagcatttttttaatcttttaggTGTGGCTTTTTCTCTAAGATAATA
TATCAATACATTTCTTTAGCCAACTTTTACAATTATGAGCTAAGCGTGAA
GCTGCACTTCTACCCGACATTTGTGAcgaaattccgcgaaaatttcttct
cgcgaaaatttcttcccttaaggtatttagATAACAAATATGTTTTCCTT
TCCATAATAAACAGCTAAGAgaagcatttttttcatttatttacagAGCT
ACGGTGGATCTTCGGCTTACGGAACTAATATGAGAGGCCAAAGGTTCTCC
ACTTTTGACCGTGACCGGGGTAACGATAATTGTGCAAAAAAGTATGGGGC
GTGGTGGCACGAGAGATGTCATACAGACGCAATGAATGGTCAATATTCCC
ACAAAAAAGAACCAGTGTCTTTTGCCAACGGCATCATTTGGTATGATTGG
ACAGGACATCAAGAGTCGCTCAAAAGTAGTTTGTTAATGGTACGACGTTC
TTCGTTCAAACAGAGAATTCCATGAACAATTTATTATCATTTATTAAATG
TTAACACTAGCCTGTTAGAGAAACACTGCTTATTTATTGTGTACgttaaa
taaacaaataaaaatttggtcAGCGTTGTTGGTGGGTAGTTATTGGCTAC
TGTCATCAGTGTTAAGTAGTCATAAActagaatgggctcttccagaaaaa
attcgttcataggggggtggaggatattatttttttcatgaattacccct
ggacattttgacttttaaccccctggacacgggttatacccctcgacaaa
catcaaatcaacctcGTGGACGCAAAAaaatacccctggacattggaatt
taccccctggacattgcgatttttttggtattttttcaatacccctggac
aattcattcttcaccccccatgaacggattttttctggaagagtccaATA
CCCATGTCTCAGTCTGGAGATATTATTTGATACGgtttacacgttgtttt
ttataaaaacatccaaaaatttaaaagccttcgggtgttcttaacttttt
aggttttaagcctaaaaatgttcttaaaatgttgttattttctcCGTTTT
GTGACCTTTCATAcccattttcctgaaaaaatcgGGTTTTCAGTTGGAAA
GCACACACTGAACCGCTGGGAAAAGGTTGATACGACTTTCCTATTTATTG
AATATCGAACTTTGTTAATAATATAAGGCTGGCCTTAAAAAGATGTTGAT
TCGCCGTCAGCCGACCAACTCTTCTTTAAACTTGCCGACTTTATTTTATT
GCTATTTGatgaagagaattttttttcttcaaaaattaaaaaatgtgaac
aaaaattcaatgaatgaccaaaaattccgaccgaccgacccacctccaaa
atctagggtggggtgacggcaaaccaagaattttttaagtccagcctaac
AAATATCTAAATAtatggaaaaatcaaaatataatagccgcattcttttt
caccgtccaacataAATATATGGAATATGTACAGTAAACTGCAACGCCCA
TGTCAAATGATATTATGTTGGAAAAAACATTGCAAGTTAGTTATTTGTGG
ACACTTTATTTAGAGTAGTGAGTAAGACAtgaataattcatgatattcat
gatgtaatcttttatacggaagcacacaaaataatccggaactagtggta
aaatttgccactagtcttttgttattttgccactagttccgggttatctc
gggtgcttccgtataaaagattacgtcatgaatatcatgaatacaccttt
cccgtaattcgtaaaactaatgcgcaCGCATTATTTctatgctctccacc
gtttggtctctggaggtaaacaaacccgtttttccCTGCGTTTCcttaga
aaaagtttttttttgagcttttcttaagttctgtcgaacaaaacccccta
aaattttagtatgttcaatctattcatgatattataccaccctgaaaatc
ttttgccaaaagaagatcactatcaaaagttagaggctgaaaacccactt
tccctaacccctcacaggcaaaaacgcgtttctTTATATGTATTCATATG
ATCCAGCGACAAAGCACTCCGTttttgagcactctggtgacaGCAATGAT
GCGTCCTTAAACACGTGACTGCGATATGCTCATCGATTTGATGATTTCTA
ATAATATTCAATGGGGGTATCCTATTCTAGTTATGAATTTCATACCATAA
Aactgggacgagatggagtttttacaagctcttatttggttttgttggtc
gttaaccagtaataaaacaattttgttactttttctaaagaacgcgtaat
ttttattacttcaaatgaccaattattgaccaagtatcttataaaaactc
catctcatctgagtGTAATTGTATCTCTTCTGATAAAACTGATGACAAGC
GCTCAGTGTTCTTTGGGCGTTTTCATATAAAAGATAACGTCATAAATATC
AAGAATAACGCGAGGGTTGATAAGTTTGTCAACTTTAAAGATGAAGGGCG
GTCTTAATGTAAAGAGTAGGAACATTCGGCGGGGTCATCATGACATCACA
CACCTATACAccattttggattttgaaattcccatcgataattttttttt
tactatgcAATAATCTAAATATTAAATCAAAACGTTACAATATATGATTT
GCTTAAAATACGTACAGCTAGGaaatataattcaaaaataaaaaaaataa
aacacacGACACAAATAAATATAGTATGTCAATACTATCGTTGTGGATGC
TCAAAACAATTTCTCCATGCTTGAAGTTaccacaggaaaaaattattgat
accCAAACCCATATGGAAATTTCAATTTACCCAtacggaaatttcaaatt
atttttagtttgcgATTTTGACTTATGGATTTCAAGAGGTTTTGAAATAT
TGCTTCCATTTCATTGTTTCTCCTTTATCATCGACAAAAtcatggaaaaa
atttcaaaaaacttaataagcaggggggttggaataagaatgtcctgggt
ggaaaattttcgaaaaattaatcagcggggggggggcggctgttaggtac
ccgagagtacacaATCATCTATTTCaatcatataggaggatattttcaca
aatggcGAAAATCCTGTGTATATCAAAAGCTGAGGATCAGATtgtgtgtt
ttcttgaaatttctttGACTCGTATtgagatttagaacgccattgTTACT
TCTTTTTATCTTGACTCATATCGAGGTACTTTCTTCCTTGTGGTCgtttt
agatcactagtttttcATTGATGGATTTCGATgtcatcaaattttctttt
tcaattccaACCTGATGATTCTATGTGAATATTCATTCTTTCTAGACTTT
GTTGTTAAATCATGTATGTCCTTTTGTTAAATATACAGTATGCAGatctg
acgagtcctaataaggacgaaatgtaTATGCTGCTCTGCTATAATCCTAT
TTCAATCGAGCTTGGGAAAGTGGGTGTCAAAAGATAAACTCGTGAAAGCA
GCTAAACGAGTTGGTATAACAGACACTGGTTTGAATGTTCACTGGATGAA
ATTTCAGTCCGCTGCCAGTTTGCTTCACAGCACACCTATTGTACAAAAAC
CAACACAGTCGAATTCGTCTATTCAATCACCGTTAAACGTGAGGAAAGGA
ACCGCACGTCATATCataaatacaaatatgaacagtCGATGAAAAGGATA
CAAGAGCTCGAAAATTCGATACCTTCACTCGACGAAATAGATCTTCTGTG
CATCTAAATCAAACCTAAGGAAGCTTCATCAAAGAAACATAAAATCACAC
AAGTACACGGTTCGATGCGTGCAAATGACATCATCAAAGCTGCCGAGAAA
ATACCTGCCGATAAAGAAGAGAAAGGAAACAAGAAAAAACAGTTGATCGA
GAAAAAGCAGCACGAAAAAGAACCCTTTTACCGATGCAAGACAAAGTGTG
TCTGTATTGGAAAATGTGCTGCGGCTGTCTTCAATGAATGTTCCGTGTGT
CATAACATTCTAAAATCACAATGTACCAAGGAGCCTGGTGAAAAGCCAGT
TATGTTACAAGTAGAGGGGGGGGGTAGAAAAAGGGGCAAAACCAGCAAAA
GGATAATATTTGCAGAGGACTCGTCAGACGATGATTTCGAATGATGTATT
TATTATCCTTCGTTATTTTGAATTAAATATTACATCGATACTTTttaaag
tccattcgctttaagGGTGCACTCTCTTGCGCTACCATGTGGAAACCATG
TCAGTGTCTAATTTCCCACTTTGCTTTACTACCATGTAGAAACCACATGG
TAGTAAAGCaaagtgcacacttaaagcaaaTGGACTTTCTAAACTACATT
ATACATTGCgttagtttgaaaattgattgaTTCTTGTTTTGCTCCTTAtt
cattcatttttcaatttgagtaatttaacGTAAATAAAGTTATGATAGAG
TTTGATCTGGgtctttcaatgtttttatgtGCTTTTTAGTTGGAGTTAAA
TGGTTTTTATGTTCTTTACCtcttattttccaaaaatttaccGCTTTTCA
ACATTCGAGAtttgaacaagtgatactttgatgaacctacctggattatg
catttaacacgtttataattgatatctacgtgacgtgaccattaaacaat
cattcagaacacaaatagtgatgatgtattaaaattagtcgtttgtttct
tataaaaaaaacgtttagaaaccaaaatttcatgctcttgttctttcata
ttcaagatttcgtgagcaaaaaaacatctccaaaaaatttagtaatttgg
ctaagaacattgatgtatgtttattaatagtgattcttattgatcaagat
gctttttttgagctgaaaaattcattttttacaaaagtctgctcgagcca
tcttttatctactttcatacaaaaaatcagtcCAAAAAACAATTGTCCAA
TATTTcgctaagtccaaaaaacccttttatggccgtttttttagctgaaa
tttactcaaattttttttctcaaaaaatcgggTTCCTNttttttagctga
aatttaccccaaagttttccccaaaaaaatcgagctccttcacattcgag
gatttatagttatgcatctttgtgcaaaaaatcgtaaaaaatgaaagagc
caatcaatctaatacctaagcaattgataatgtgctcataaaaaatatcg
aatttggccagtttttctataaaaacacgccaaacaaccaaatttcctgt
ctaaacactcgtgagaaaaaaaaacatctatctcataaaaaaattgagta
atttgactgagaacattgatgtatgcttattaatagtgattcttgtagtt
aaacatgcgttttttgagccaacaaaatttttttgcaaaaatctgcttga
gccatcttatacctatgatggtaccctactttcgtgcaaaaaatcagaaa
aaattaatgatccaattttttagccgttttttggcccaaatttgccccca
aaatttttttttcgaaaatcgggctccgtcacattttgggcattgccatt
ttgcatcattgtgcaaaaaatcagaaaaaactaatgagccaatcatgaga
aaagctggtaactaacggacggacagacggacggacggacaaaggttaat
ttataggacctccaccggggtaggtccaacaataaTGAGTTCTTATCGTC
ATTTAGATCAAAATTGGCCCACGGAATGCTGGTCATATAAAATTtgatgt
agtttttttcacagATTTGTCAAGCTTTTATGTTTCTTGAAATAAGCAGC
TTTAAGGATATATTATAATTATTGTACCACCTTTTATCGAGTtgattttt
atagttttttttatatagacGAAGTTATTGGAAGAAACTGTATTTTTACG
TTTCGTACGTCAAATACATCACCCGAATTTCATCCAAAACACGCTTGCTT
ACTCTTTCTTTTTATATTGTGATGTATCTTACATGCTTTTTGACCAAACT
AATTCAAATGTGCAATGTTGTTGACATTAGTTCAAACTTTAcagccaatt
ttcgaaaaacctgCATTCTGTGGGCCACCTGCATTCTGTGGGCCAGGAAC
TGTGTaggagaatatttttttttctcgggGAGTATAAAAAATGACCTTCA
AACACAAGTTCTAAATAATGAATTGTTCAATAGATTGAATGGTTTCCCAT
GGATAGATTGAATATGGTTTTCCCGTTATGGTTTCCCATGGGTTTTGAAA
GATTTCATCATGCCagatctttttaaaatttgaaatctcaTTCAACTCCT
TTTTCATTTCTTATCAAACGTATAATTCTTTTGCCTTGATAAGTCACAGT
TCATTCGTTCTTTGATTGACACAACGCGATTGACCAATAAATTACAAATA
AGTTGAGAAACGATAcatgttctttttttattagaacaatttaGAATAGc
taaatatttagaaaaaaaaggcTCAAACAAGTCAAAACCTTAGCACAAAT
TAGAAAATGATTCAAGTCTCTGATTCCAGAGAAGACTCAGAACATTCTGA
TTTAAAAACAACAAGCAAATAGCAATACAGTCAACtatctctctttaatt
cgaacctctattattcgaatcttcctataattcgaactcaaatACAAGTC
CCGGGatgggatttaattttgcggttcacATCTCAAAATTCGGAAGTTTC
GCGGAATTTGATTTTTGTACTTACTTTTTAAAGAATGTTTTACTTGAACt
ttgttaagaacattttaagaataaagccagaaaaaaagaaaagtcaaGTC
CAACTCAAATTCACtggttcttataataaaagcgTACGATTCTCGCTTCA
AAATTTTGTCGACTTTGTTGACAAGATCACTAAATGTGAGAGTTTTTCTT
CAAACGTTGCATAGTAATTGTTTCTATAGTTAAAGGAATTGAGATCATCC
CCACGAAATAGTGAATTGTGACGGCCAAAATAAGACATTGAATATTCTCT
GAATATAAATGGTCGATTGTGATGAATGAACGATAAAAGCATAGTTTCCA
TTATTgactttttcaacaaaaataaatttaatttattttaaaaatatttt
ttcaattgaaatGACACTTTTAGTGTGGTTCAGAGGAAATTGACACCAGA
GTTTGACAGGTATGAAGATGTTTTTGTTCAATGCGGTGCTTGGGATTTTC
TTCATAGCTAATGAAGCTAATGGTTCAAAAGTATTCAACCTTATTGCAAT
AGACAAGGGCATTGTAGTCGCTCCTTTTCATTCGACGACGGCGCATTATC
GTCAATGCTTTAGTATCTGCTCCTTAAATCCCAAATGTCTTTCTTTCGAC
CACTCCTACACATCGGACATTGGAGAATGCAGTTTCTATGACGTTGGAGT
AGCAGTTTTTAACCAGACAACTAAATTCCAAGAAAAAATCGGTAGCAAGT
ATCATTCCATTCATATGGCCACTGATTGTGCTGACTGGTACAGACTGGGT
CACCGTGAAAATGGCGTCTATGAGGTTCATCTGTTGTCTAAGTATAAGCG
CCGTGTTTATTGTCATATGGGGGCGGCTGAGGGCGGTTGGATGGCCTTTC
AACG Coding sequence (CDS) from alignment at sc0000001:2656579..2666332+ >TCONS_00000129 ID=TCONS_00000129|Name=TCONS_00000129|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000001:2656579..2666332+ (Clytia hemisphaerica)
GAAGCAAACGGTTCAAAAGTGTTCAACCTTATTGCGACAGACAAGACCAT
AGTAGCCACCCCTTTTCAATCGACGACGGCGCATTATGGGCAATGCTTTA
GTATCTGCTCCTTAAATCTTAAATGTCTTTCTTTCGACCATTCCTACACA
TCTGACATTGGAGAATGCAGTTTCTATGACGTTGGAGTAGCAGTTTTTAA
CCAGACAACTAAATTCCAAGAAAAAATCGGTAGCAAGTATCATTCCATTC
ATATGGCCACTGATTGTGCTGACTGGTACAGACTGGGTCACCGTGAAAAT
GGCGTCTATGAGGTTCATCTGTTGTCTAAGTATAAGCGCCGTGTTTATTG
TCATATGGGGGCGGCTGAGGGCGGTTGGATGGCCTTTCAAGAAGCAAACG
GTTCAAAAGTGTTCAACCTTATTGCGACAGACAAGACCATAGTAGCCACC
CCTTTTCAATCGACGACGGCGCATTATGGGCAATGCTTTAGTATCTGCTC
CTTAAATCTTAAATGTCTTTCTTTCGACCATTCCTACACATCTGACATTG
GAGAATGCAGTTTCTATGACGTTGGAGTAGCAGTTTTTAACCAGACAACT
AAATTCCAAGAAAAAATCGGTAGCAAGTATCATTCCATTCATATGGCCAC
TGATTGTGCTGACTGGTACAGACTGGGTCACCGTGAAAATGGCGTCTATG
AGGTTCATCTGTTGTCTAAGTATAAGCGCCGTGTTTATTGTCATATGGGG
GCGGCTGAGGGCGGTTGGATGGCCTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000129-exon-sc0000001-1491911889:2656579..2656734 | TCONS_00000129-exon-sc0000001-1491911889:2656579..2656734 | Clytia hemisphaerica | exon |
| TCONS_00000129-exon-sc0000001-1510915933:2656579..2656734 | TCONS_00000129-exon-sc0000001-1510915933:2656579..2656734 | Clytia hemisphaerica | exon |
| TCONS_00000129-exon-sc0000001-1575043694:2656579..2656734 | TCONS_00000129-exon-sc0000001-1575043694:2656579..2656734 | Clytia hemisphaerica | exon |
| TCONS_00000129-exon-sc0000001-1491911889:2666097..2666332 | TCONS_00000129-exon-sc0000001-1491911889:2666097..2666332 | Clytia hemisphaerica | exon |
| TCONS_00000129-exon-sc0000001-1510915933:2666097..2666332 | TCONS_00000129-exon-sc0000001-1510915933:2666097..2666332 | Clytia hemisphaerica | exon |
| TCONS_00000129-exon-sc0000001-1575043694:2666097..2666332 | TCONS_00000129-exon-sc0000001-1575043694:2666097..2666332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2656579..2666332 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
|
