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TCONS_00000128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000128
Unique NameTCONS_00000128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000128 ID=TCONS_00000128|Name=TCONS_00000128|organism=Clytia hemisphaerica|type=transcript|length=1043bp
CCCTGTAACTGATGAAATATTTGTAATCAGCTTGTTGTATGCGATAAAAG
AAAACCACTCCTGATTCCATCCCGATTGCCACGAAATCGTTTTCAGGTGA
AAAACTTATACAACTGACTGCCGATCGATCGCATTGAAACGAAGCTAGTT
GTTCACCACGTGATGCGTCGTAAACAAACCAACGCCCGATGGCGTTCCCA
ACTGCAACCACGCCACCATTGGCGTTGTATGAAGCGGCAGTTAATGGTGA
TGTGTGTTTGACTTCCCATAAGTCTGCTTTGGTTTCTGTAGACCATGACG
TAATCATATTGTCGGTACCGGCAGTAAGGAATGTGTTGTCCGTTGGGGAC
ACTGCGAAAGCTGGTACCATATTGTCCGAGATACCTTTCACAATACATTC
GAAAGCTTCAGTCATCGAACCTGCCAAGATAGAATTACAACTTGTACCAA
CAACTAATCtcaagaaatcaaaatctttatcGCCACCGCTGAACCCACCG
AAAAGCGGCACAATGGAAACCACACCGCCCACGTGCTCCGGTAGTTCAAA
CTCTGCTTTAGTTGGTACGCTGTCAATAAGACTGACAAGGGTGAGTTTAC
GGTCGGCTCCGCCGCCAGTGACAACATGGAAATCAGAGAGCACGCGTAAG
GTAATGATACTACCAGTATGGTTTGTTGGTACGGTTGATAGGGTACGCTT
CAAATGCGTATCCCAAACGTGGATGTAACCATTTGAGTCACCAGTAATGA
GACGTCCGTCGTGGTTGAAACTGCAGCACGTTACGTATTCGGGCGTCGAG
TAATCCTCGAAAAACCCGACACGGTAGACGGCGTCTGGTTGAGAGACGTC
CCAAAAGAAGACGTGCTCTTTACCGCAGGTGACGACGGATGTGCTATCGA
ACGGATCGAATTGGATGTCGAGTTCAGCATAATGGTCTTCGTAAGGTTCA
CTGTGTGAGAGTTTAATCCCTTCTTCCCAGTCCCAAACGGTTAGATACCA
TTCTCCGTTACCGTTAGCAACCGTTGCTAAGCGTTCACCGTTA
Run BLAST on NCBI

transcript from alignment at sc0000001:2611099..2612324+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000128 ID=TCONS_00000128|Name=TCONS_00000128|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at sc0000001:2611099..2612324+ (Clytia hemisphaerica)
CCCTGTAACTGATGAAATATTTGTAATCAGCTTGTTGTATGCGATAAAAG AAAACCACTCCTGATTCCATCCCGATTGCCACGAAATCGTTTTCAGGTGA AAAACTTATACAACTGACTGCCGATCGATCGCATTGAAACGAAGCTAGTT GTTCACCACGTGATGCGTCGTAAACAAACCAACGCCCGATGGCGTTCCCA ACTGCAACCACGCCACCATTGGCGTTGTATGAAGCGGCAGTTAATGGTGA TGTGTGTTTGACTTCCCATAAGTCTGCTTTGGTTTCTGTAGACCATGACG TAATCATATTGTCGGTACCGGCAGTAAGGAATGTGTTGTCCGTTGGGGAC ACTGCGAAAGCTGGTACCATATTGTCCGAGATACCTATAAAGACATTAAT GTCAATTCAAACTTTAAGGCACTTTAAGGAAGACTGAAGAATGCGAGTTC GaactatgaaaaaaatttgaataataaaacattcgaatcaccAAGATTTA AATAGTACAAATTCAAATTACCGAGATAACAAAAGTGTAGCATAAGAAAA CTCGTAACAAAACATACCTTTCACAATACATTCGAAAGCTTCAGTCATCG AACCTGCCAAGATAGAATTACAACTTGTACCAACAACTAATCtcaagaaa tcaaaatctttatcGCCACCGCTGAACCCACCGAAAAGCGGCACAATGGA AACCACACCGCCCACGTGCTCCGGTAGTTCAAACTCTGCTTTAGTTGGTA CGCTGTCAATAAGACTGACAAGGGTGAGTTTACGGTCGGCTCCGCCGCCA GTGACAACATGGAAATCAGAGAGCACGCGTAAGGTAATGATACTACCAGT ATGGTTTGTTGGTACGGTTGATAGGGTACGCTTCAAATGCGTATCCCAAA CGTGGATGTAACCATTTGAGTCACCAGTAATGAGACGTCCGTCGTGGTTG AAACTGCAGCACGTTACGTATTCGGGCGTCGAGTAATCCTCGAAAAACCC GACACGGTAGACGGCGTCTGGTTGAGAGACGTCCCAAAAGAAGACGTGCT CTTTACCGCAGGTGACGACGGATGTGCTATCGAACGGATCGAATTGGATG TCGAGTTCAGCATAATGGTCTTCGTAAGGTTCACTGTGTGAGAGTTTAAT CCCTTCTTCCCAGTCCCAAACGGTTAGATACCATTCTCCGTTACCGTTAG CAACCGTTGCTAAGCGTTCACCGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000070XLOC_000070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000128-exon-sc0000001-1491911889:2611099..2611478TCONS_00000128-exon-sc0000001-1491911889:2611099..2611478Clytia hemisphaericaexon
TCONS_00000128-exon-sc0000001-1510915933:2611099..2611478TCONS_00000128-exon-sc0000001-1510915933:2611099..2611478Clytia hemisphaericaexon
TCONS_00000128-exon-sc0000001-1575043694:2611099..2611478TCONS_00000128-exon-sc0000001-1575043694:2611099..2611478Clytia hemisphaericaexon
TCONS_00000128-exon-sc0000001-1491911889:2611662..2612324TCONS_00000128-exon-sc0000001-1491911889:2611662..2612324Clytia hemisphaericaexon
TCONS_00000128-exon-sc0000001-1510915933:2611662..2612324TCONS_00000128-exon-sc0000001-1510915933:2611662..2612324Clytia hemisphaericaexon
TCONS_00000128-exon-sc0000001-1575043694:2611662..2612324TCONS_00000128-exon-sc0000001-1575043694:2611662..2612324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2611099..2612324 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.657714 0.824895 0.294701 0.0585855 0.901899 1.19916 0.664327 1.48793 1.88599 1.82615 2.43348 2.11472 14.3272 13.2381 6.37714 10.9629 7.92892 7.72781 29.2586 22.6436 13.6658 14.9751 4.8063 8.08798 9.24801 16.2364 1.79711 0.884789 1.83865 1.5541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00000128 vs. Swiss-Prot (Human)
Match: EMAL2 (Echinoderm microtubule-associated protein-like 2 OS=Homo sapiens GN=EML2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.747e-44
Identity = 106/341 (31.09%), Postives = 164/341 (48.09%), Query Frame = -2
Query:   20 NGERLATVANGNGEWYLTVWDWEEGIKLSHSEPYEDHYAELDIQFDPFDSTSVVTCGKEHVFFWDVSQPDAVYRVGFFEDYSTPEYVTCCSFNHDGRLITGDSNGYIHVWDTHLKRTLSTVPTNHTGSIITLRVLSDFHVVTGGGADRKLTLVSLIDSVPTKAEFELPEHVGGVVSIVPLXXXXXXXXXXXXFLRLVVGTSCNSILAGSMTEAFECIVKGISDNMVPAFAVSPTDNTFLTAGTDNMITSWSTETKADLWEVKHTSPLTAASYXXXXXXXXXXXAIGRWFVYDASRGEQLASFQCDRSAVSCISFSPENDFVAIGMESGVVFFYRIQQADYK 1042
            NG  L    + + +  L+VWDW +  K+   +   +  A L   F P D T ++TCGK H++FW +       R G FE +  P+YV C +F   G ++TGDS G ++VW     R    V   H G +  L  L D  +V+GGG DR++ L           E E+PE  G V ++    G             L VGT+ NSIL GS+   F  +V+G  + +    A  P+   F+T G D ++  WS+++   LW      P  +A ++ +G V+AVG   GRW + D    + +A        +S +SFSP+  ++A+G    +V+ Y + Q   K
Sbjct:  171 NGGNLLCAVDESNDHMLSVWDWAKETKVVDVKCSNE--AVLVATFHPTDPTVLITCGKSHIYFWTLEGGSLSKRQGLFEKHEKPKYVLCVTFLEGGDVVTGDSGGNLYVWGKGGNRITQAVLGAHDGGVFGLCALRDGTLVSGGGRDRRVVLWG--SDYSKLQEVEVPEDFGPVRTVAEGHGDT-----------LYVGTTRNSILQGSVHTGFSLLVQGHVEELW-GLATHPSRAQFVTCGQDKLVHLWSSDSHQPLWSRIIEDPARSAGFHPSGSVLAVGTVTGRWLLLDTETHDLVAIHTDGNEQISVVSFSPDGAYLAVGSHDNLVYVYTVDQGGRK 495          
The following BLAST results are available for this feature:
BLAST of TCONS_00000128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMAL21.747e-4431.09Echinoderm microtubule-associated protein-like 2 O... [more]
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