TCONS_00000110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000110
Unique NameTCONS_00000110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000110 ID=TCONS_00000110|Name=TCONS_00000110|organism=Clytia hemisphaerica|type=transcript|length=270bp
ACAATGCGGGGCAAACATTAGCATTACATGATTGTTGCGTTACAGGTCCC
TCTAAACCTTCGCATGATGAGGAACTGACCACACTTTGATCGTCTTCACG
AATACATTGTAAGAGCCGTGTTTGAATACCTCCACCGCAAGTCTTGGAAC
AGGATCCCCATTCACCAGCAATCAATTTGAAGGTCGGTAATGGAACAGTG
GTGTCATTGTCAATAGGGGTGTAAAAGGTCCACTCAACCCCTTTGGATGT
CTGAGCGTAATAATTGACCA
Run BLAST on NCBI

transcript from alignment at sc0000001:2050508..2051826+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000110 ID=TCONS_00000110|Name=TCONS_00000110|organism=Clytia hemisphaerica|type=transcript|length=1319bp|location=Sequence derived from alignment at sc0000001:2050508..2051826+ (Clytia hemisphaerica)
ACAATGCGGGGCAAACATTAGCATTACATGATTGTTGCGTTACAGGTCCC TCTAAACCTTCGCATGATGAGGAACTGACCACACTTTGATCGTCTTCACG AATACATTGTAAGAGCCGTGTTTGAATACCTGTATATTGATTGGAGGGAA TTTAGTGGTCAATGCAAGGATTTTCGTCTGAgatggaaaatggattttac acagtaaattagcacatattctttaaatttTGGCATATATGTCGAATAAG ACTGAAAAGCTTCTTTATATGCATTGGAACCTACATAATTCGAACAAGTA CGGgtaacacaaatttgttcgatttaaggaaATTTCACCGAGTTACCGGT TTATAAGGTTTATAAGTCATTGTCAACCGACGAGACCGGTTTCAAGGTTT AACTATTTGAGttaggagacattcgagttatagaggttcgagttaaagaa ttTTTAACACTTGGAAGATCATATTTCAATATTTAGAACAGGTCGAACGA AGGTTGTAAAAGCTTGAATCAACCGATATAAACAGGCTTATTTTAGCTCG TTGAACAGCCGGAGACCGGAAAGAAAAATTGGCCGGCCAAAGGTCATAAT TATGGTACAAGACTTTGCTAGCCGTAGCGTGGTGGATCGAACATACAATT GAGGTAAACTGGAGAGGCAACTTTCCCAAGGTAGCTTTTTGGCGCCCCCT ATTTAGGAAATCTAGCACGAAACCTTGGAtatcttttccattttttctgg ctaaaactgttaattttagggtgtgaaaatgaaaaaagcaaagGAGTGTA GGTTTTTGGCACCCCTTTTAGAAAATCTAGTACGAAACTTTGGATATCTT GTCCTCGTTCTGGCTGAAAACTGCTAATTCCAGGGTGTAAAAAAACAAAG GGACGCCTCTTATCCTTCACAGATAGCAAAACCGGCTATCTATGGACCCC GTGGAGGCAATCGAAAGACTGCCTGAAAGTCCTTGACTATTGGTGGGCAA TAAAATGTCGACTCTATATTTATAGTACTTCGTCCAAACCTCGTTCATAT CGTACTGGCACCTTTTAAATGTATACTTGATGGCACCAGATAATTCTTCT GGGGATAAACGAAAACGAGGCGTTGACTTCACTACTAAAATGTTATGACC CTGAAATTAATTTCACGTTACAACATACCTCCACCGCAAGTCTTGGAACA GGATCCCCATTCACCAGCAATCAATTTGAAGGTCGGTAATGGAACAGTGG TGTCATTGTCAATAGGGGTGTAAAAGGTCCACTCAACCCCTTTGGATGTC TGAGCGTAATAATTGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000058XLOC_000058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000110-exon-sc0000001-1491911889:2050508..2050632TCONS_00000110-exon-sc0000001-1491911889:2050508..2050632Clytia hemisphaericaexon
TCONS_00000110-exon-sc0000001-1510915933:2050508..2050632TCONS_00000110-exon-sc0000001-1510915933:2050508..2050632Clytia hemisphaericaexon
TCONS_00000110-exon-sc0000001-1491911889:2051682..2051826TCONS_00000110-exon-sc0000001-1491911889:2051682..2051826Clytia hemisphaericaexon
TCONS_00000110-exon-sc0000001-1510915933:2051682..2051826TCONS_00000110-exon-sc0000001-1510915933:2051682..2051826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2050508..2051826 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70018 0.552647 0.641677 0.62778 0 0 0 0 0.955139 0.591547 0 0 26.0069 36.0113 0 1.03604 11.0614 22.2391 153.623 157.603 14.2465 20.8469 2.59919 14.1782 6.08469 11.947 0.777094 0 0 1.28175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php