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TCONS_00000093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000093
Unique NameTCONS_00000093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2095

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000093 ID=TCONS_00000093|Name=TCONS_00000093|organism=Clytia hemisphaerica|type=transcript|length=2095bp
ctcacatcctttttctgataaacatacaaatttTCAGCCTTCAACtattt
tttcctccatttccagaaacatttgttAATCAACAGTTGCAACTTTTTTT
TCTCCCATggaattcaaattttcaaatgtcgCAAAAACGTTCTGCAATTT
ACCAATTTCCCGTCTAGctcgtgtccacagtgttaaaTACCGCTAGAAAG
CTAAGACCACTGGCTTTCTTTTATTAAAAACTGGAatgctttagcataca
tagaagaaaagttagaagcgttcaaagttcacggaaaaatgaaatatttg
gttTGATGTCAACAAAAGGTGtgtgacttctggagtcgctaaaTTATAAT
CAAACGGCTGAATTATTCAAGTccaatcaaacttaatcgaacgacaAATG
TTCTATTTAAAAAAGTCACTAAGATTGAATGGAGAATCAATTGCTGAAGa
ttggaaaaaatgaaacaGTTGCTTCCTACCAAGAGGCCTTTTTTGTTGCT
GTTGACAGACTTAGCAGTTCTGACTGCACCAAAGCAGACCACAAGAAATT
TGTTGCTCTATGCAAGAAAATTAAAGATGTACACTTCTTATGCAAAATCA
CTGAGAGGCTGCTAAGGTTAACCCCATATGTTGCATTATATTACGAAAAC
GAGGGTTTTATCGAAATGCTAGCTTCGTTGCTGGAAACCTTGTTGAAGTT
GTTAACCTCTAAATCTTACAGCAAAGCCAAGCCTGTGAAGATCGATTCTA
TGTCTGGTGTGGTTATTACACTTTTTGCTAATGTTAATGATGGTTTGTTC
AATCCAGATATTCTAACCAAATTGATATCCAACCAGTATATCTCCCAAGA
GCCATCAACTATTGAGGCTATTCTATGGGGTTTGTTGAGAAAGGATTATT
TggtcaaaaaagatttgacatCTAATAAGAACTTTTGCACCTTGTTTCGT
CAATTTGGAATTGCAACTGCTAAAACCAAAACAGCCCAATTTTATCGCTA
TTACATAGCAATCATCCAATTTCTAGTCAAGAATTATGACTGGGAATTGG
CAAAGGAGCTTCTACCTTCAGTTCTTGATATCTCAGATAATAATGAAGAT
TTTGAGTATTTCTTTGCACTCTTTGAAGGCTTGGAATCAGTAAAATCTGA
ACATCTCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCTG
TTTCTCGTGAAAAATTGTATGGTATTGGATATATTGATATATTTGAATAC
CAAAGCATGTTGAAGTatctaaaaattgtttttaaagatGATTTTTATTG
CAATACAGCCAAACAGCTTACAACCCTTGATGAGTTCAAGTCTAAAGATT
ATGAAAAAATGTGTAACACTACTAAAGAAAGTATTTTGCAAAGACTgatt
caagatttgaaaaaggATTTCTATTTTAAGGAATCTTACATTGATCTAGT
ACGTGTTCAGATAGAAAACCTAAAGACGCTACAAGACAAAGGGTGTCCAA
AATCGTATTGGGAGCAGCCAGATGCCATTTTTTATGACGAACATATTGAA
GAATTTTTAGAAAGTGATAAAGTGACACTAGTTGTTTctgatgaatttga
aaatgacTTGGAATATGCAAATTCATGGATTAATGATTATGCCGGACCAC
ATCTTCACAGAGGTTATAGTTTCAGTGCTATCGCAAGGTTATCCACAGAA
GGCACAGTTGAAGTTATActgcaaaaagaaaaacatatatATGAAAGGAA
ACGAGATGGATATTTTAGACTGATGAATGAATTATTTGAATTGGAAACTT
TCTTGCAGTCTCCAAAGATAGTGCGTattggcacaaaaaggaaatacAAT
CTCagagaacgaaaaagaaaataaatcttaTTGTAGAAAATCGTATCTTA
TCGtagaaaattttcttaattcatCCAATACCTCACTTTTTCAATTGTTT
GAGTGAGATTAGGTAGATAATTCATAAAATTGTAGCAAGACCgtaattat
tttattaatttctaggaatttttcaaaattttgataaaaacttaactaaa
aatttttttaacatgttTCATGTGTTTTACCCTTTCTGGTATTGC
Run BLAST on NCBI

transcript from alignment at sc0000001:1843869..1846692+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000093 ID=TCONS_00000093|Name=TCONS_00000093|organism=Clytia hemisphaerica|type=transcript|length=2824bp|location=Sequence derived from alignment at sc0000001:1843869..1846692+ (Clytia hemisphaerica)
ctcacatcctttttctgataaacatacaaatttTCAGCCTTCAACtattt tttcctccatttccagaaacatttgttAATCAACAGTTGCAACTTTTTTT TCTCCCATggaattcaaattttcaaatgtcgCAAAAACGTTCTGCAATTT ACCAATTTCCCGTCTAGctcgtgtccacagtgttaaaTACCGCTAGAAAG CTAAGACCACTGGCTTTCTTTTATTAAAAACTGGAatgctttagcataca tagaagaaaagttagaagcgttcaaagttcacggaaaaatgaaatatttg gttTGATGTCAACAAAAGGTGtgtgacttctggagtcgctaaaTTATAAT CAAACGGCTGAATTATTCAAGTccaatcaaacttaatcgaacgacaAATG TTCTATTTAAAAAAGTCACTAAGATTGTGAGTATTGCCAGACAgtgtttc agctagatcttattttttccctaaattatgctaaacgaccccacttgTTC ACTTCTTCTGGTATGAAATCGTAATAAGGAAACTTAGAAACTTACTAAAC TAAGCGGTGCTGCAAATAACAACTGATGActggtaattaccggtcatctT GTAGTTTCTACCGGCCATTCTGAAGCTCAATCTTTCATTTTGTCCAGTTA AAATTTGAAGACTAGAGGCTTTAGATACTTAAAATAGCGCTTCTAATTTA AGAGTCGAATAGATTTTAAATTAGTGTTTACTGTAGCCAATCTCAAGATT ATTTCGGACTTTTCTAAACAGGTTCTGCTAGACCTCCCgctcaaattatt tttgttgtGTTCAAAAAATTACTggccaactgaaatttcctcatTTGCAG cgcttctttttcattttgaaagttAGAAAAAAAACTAGTACGCTTCTATA TGCTTTTTGAAGAGCCTCCCTCCTCCCCCCTCCCCCTCAGAGTTTACATA CTTTTTGAAGGGCCCATACATACCTTATAACAGATTTTTAAGACAAAAGA ATTACTTTGATCTTATCTACGTCACTAATGTTTATTAAATCTATATTGAA TCAATATTACGATcactttatatttttcattgatCATAATAGGAATGGAG AATCAATTGCTGAAGattggaaaaaatgaaacaGTTGCTTCCTACCAAGA GGCCTTTTTTGTTGCTGTTGACAGACTTAGCAGTTCTGACTGCACCAAAG CAGACCACAAGAAATTTGTTGCTCTATGCAAGAAAATTAAAGATGTACAC TTCTTATGCAAAATCACTGAGAGGCTGCTAAGGTTAACCCCATATGTTGC ATTATATTACGAAAACGAGGGTTTTATCGAAATGCTAGCTTCGTTGCTGG AAACCTTGTTGAAGTTGTTAACCTCTAAATCTTACAGCAAAGCCAAGCCT GTGAAGATCGATTCTATGTCTGGTGTGGTTATTACACTTTTTGCTAATGT TAATGATGGTTTGTTCAATCCAGATATTCTAACCAAATTGATATCCAACC AGTATATCTCCCAAGAGCCATCAACTATTGAGGCTATTCTATGGGGTTTG TTGAGAAAGGATTATTTggtcaaaaaagatttgacatCTAATAAGAACTT TTGCACCTTGTTTCGTCAATTTGGAATTGCAACTGCTAAAACCAAAACAG CCCAATTTTATCGCTATTACATAGCAATCATCCAATTTCTAGTCAAGAAT TATAACTGGGAATTGGCAAAGGAGCTNTATTACATAGCAATCATCCAATT TCTAGTCAAGAATTATGACTGGGAATTGGCAAAGGAGCTTCTACCTTCAG TTCTTGATATCTCAGATAATAATGAAGATTTTGAGTATTTCTTTGCACTC TTTGAAGGCTTGGAATCAGTAAAATCTGAACATCTCAAAATACTTGTTCA AAGTGGTATTTCATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATG GTATTGGATATATTGATATATTTGAATACCAAAGCATGTTGAAGTatcta aaaattgtttttaaagatGATTTTTATTGCAATACAGCCAAACAGCTTAC AACCCTTGATGAGTTCAAGTCTAAAGATTATGAAAAAATGTGTAACACTA CTAAAGAAAGTATTTTGCAAAGACTgattcaagatttgaaaaaggATTTC TATTTTAAGGAATCTTACATTGATCTAGTACGTGTTCAGATAGAAAACCT AAAGACGCTACAAGACAAAGGGTGTCCAAAATCGTATTGGGAGCAGCCAG ATGCCATTTTTTATGACGAACATATTGAAGAATTTTTAGAAAGTGATAAA GTGACACTAGTTGTTTctgatgaatttgaaaatgacTTGGAATATGCAAA TTCATGGATTAATGATTATGCCGGACCACATCTTCACAGAGGTTATAGTT TCAGTGCTATCGCAAGGTTATCCACAGAAGGCACAGTTGAAGTTATActg caaaaagaaaaacatatatATGAAAGGAAACGAGATGGATATTTTAGACT GATGAATGAATTATTTGAATTGGAAACTTTCTTGCAGTCTCCAAAGATAG TGCGTattggcacaaaaaggaaatacAATCTCagagaacgaaaaagaaaa taaatcttaTTGTAGAAAATCGTATCTTATCGtagaaaattttcttaatt catCCAATACCTCACTTTTTCAATTGTTTGAGTGAGATTAGGTAGATAAT TCATAAAATTGTAGCAAGACCgtaattattttattaatttctaggaattt ttcaaaattttgataaaaacttaactaaaaatttttttaacatgttTCAT GTGTTTTACCCTTTCTGGTATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000047XLOC_000047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000093-exon-sc0000001-1491911889:1843869..1844294TCONS_00000093-exon-sc0000001-1491911889:1843869..1844294Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1510915933:1843869..1844294TCONS_00000093-exon-sc0000001-1510915933:1843869..1844294Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1575043694:1843869..1844294TCONS_00000093-exon-sc0000001-1575043694:1843869..1844294Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1491911889:1844961..1845538TCONS_00000093-exon-sc0000001-1491911889:1844961..1845538Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1510915933:1844961..1845538TCONS_00000093-exon-sc0000001-1510915933:1844961..1845538Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1575043694:1844961..1845538TCONS_00000093-exon-sc0000001-1575043694:1844961..1845538Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1491911889:1845602..1846692TCONS_00000093-exon-sc0000001-1491911889:1845602..1846692Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1510915933:1845602..1846692TCONS_00000093-exon-sc0000001-1510915933:1845602..1846692Clytia hemisphaericaexon
TCONS_00000093-exon-sc0000001-1575043694:1845602..1846692TCONS_00000093-exon-sc0000001-1575043694:1845602..1846692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1843869..1846692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65458 0.643806 0.000693201 0.741249 4.71846 4.97592 1.34847 3.21385 0.281676 1.22178 0 0 0.338901 1.045 0.314688 0.101137 0 0.709066 0 0 0 0.115978 0.603321 0.571339 0.555325 1.12947 0 0.7289 0.968372 1.4132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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