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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000092 ID=TCONS_00000092|Name=TCONS_00000092|organism=Clytia hemisphaerica|type=transcript|length=1987bp
ctcacatcctttttctgataaacatacaaatttTCAGCCTTCAACtattt
tttcctccatttccagaaacatttgttAATCAACAGTTGCAACTTTTTTT
TCTCCCATggaattcaaattttcaaatgtcgCAAAAACGTTCTGCAATTT
ACCAATTTCCCGTCTAGctcgtgtccacagtgttaaaTACCGCTAGAAAG
CTAAGACCACTGGCTTTCTTTTATTAAAAACTGGAatgctttagcataca
tagaagaaaagttagaagcgttcaaagttcacggaaaaatgaaatatttg
gttTGATGTCAACAAAAGGAATGGAGAATCAATTGCTGAAGattggaaaa
aatgaaacaGTTGCTTCCTACCAAGAGGCCTTTTTTGTTGCTGTTGACAG
ACTTAGCAGTTCTGACTGCACCAAAGCAGACCACAAGAAATTTGTTGCTC
TATGCAAGAAAATTAAAGATGTACACTTCTTATGCAAAATCACTGAGAGG
CTGCTAAGGTTAACCCCATATGTTGCATTATATTACGAAAACGAGGGTTT
TATCGAAATGCTAGCTTCGTTGCTGGAAACCTTGTTGAAGTTGTTAACCT
CTAAATCTTACAGCAAAGCCAAGCCTGTGAAGATCGATTCTATGTCTGGT
GTGGTTATTACACTTTTTGCTAATGTTAATGATGGTTTGTTCAATCCAGA
TATTCTAACCAAATTGATATCCAACCAGTATATCTCCCAAGAGCCATCAA
CTATTGAGGCTATTCTATGGGGTTTGTTGAGAAAGGATTATTTggtcaaa
aaagatttgacatCTAATAAGAACTTTTGCACCTTGTTTCGTCAATTTGG
AATTGCAACTGCTAAAACCAAAACAGCCCAATTTTATCGCTATTACATAG
CAATCATCCAATTTCTAGTCAAGAATTATGACTGGGAATTGGCAAAGGAG
CTTCTACCTTCAGTTCTTGATATCTCAGATAATAATGAAGATTTTGAGTA
TTTCTTTGCACTCTTTGAAGGCTTGGAATCAGTAAAATCTGAACATCTCA
AAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGTTTCTCGT
GAAAAATTGTATGGTATTGGATATATTGATATATTTGAATACCAAAGCAT
GTTGAAGTatctaaaaattgtttttaaagatGATTTTTATTGCAATACAG
CCAAACAGCTTACAACCCTTGATGAGTTCAAGTCTAAAGATTATGAAAAA
ATGTGTAACACTACTAAAGAAAGTATTTTGCAAAGACTgattcaagattt
gaaaaaggATTTCTATTTTAAGGAATCTTACATTGATCTAGTACGTGTTC
AGATAGAAAACCTAAAGACGCTACAAGACAAAGGGTGTCCAAAATCGTAT
TGGGAGCAGCCAGATGCCATTTTTTATGACGAACATATTGAAGAATTTTT
AGAAAGTGATAAAGTGACACTAGTTGTTTctgatgaatttgaaaatgacT
TGGAATATGCAAATTCATGGATTAATGATTATGCCGGACCACATCTTCAC
AGAGGTTATAGTTTCAGTGCTATCGCAAGGTTATCCACAGAAGGCACAGT
TGAAGTTATActgcaaaaagaaaaacatatatATGAAAGGAAACGAGATG
GATATTTTAGACTGATGAATGAATTATTTGAATTGGAAACTTTCTTGCAG
TCTCCAAAGATAGTGCGTattggcacaaaaaggaaatacAATCTCagaga
acgaaaaagaaaataaatcttaTTGTAGAAAATCGTATCTTATCGtagaa
aattttcttaattcatCCAATACCTCACTTTTTCAATTGTTTGAGTGAGA
TTAGGTAGATAATTCATAAAATTGTAGCAAGACCgtaattattttattaa
tttctaggaatttttcaaaattttgataaaaacttaactaaaaatttttt
taacatgttTCATGTGTTTTACCCTTTCTGGTATTGC Run BLAST on NCBI protein sequence of TCONS_00000092-protein >TCONS_00000092-protein ID=TCONS_00000092-protein|Name=TCONS_00000092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MSTKGMENQLLKIGKNETVASYQEAFFVAVDRLSSSDCTKADHKKFVALC
KKIKDVHFLCKITERLLRLTPYVALYYENEGFIEMLASLLETLLKLLTSK
SYSKAKPVKIDSMSGVVITLFANVNDGLFNPDILTKLISNQYISQEPSTI
EAILWGLLRKDYLVKKDLTSNKNFCTLFRQFGIATAKTKTAQFYRYYIAI
IQFLVKNYDWELAKELLPSVLDISDNNEDFEYFFALFEGLESVKSEHLKI
LVQSGISFFAKAVSREKLYGIGYIDIFEYQSMLKYLKIVFKDDFYCNTAK
QLTTLDEFKSKDYEKMCNTTKESILQRLIQDLKKDFYFKESYIDLVRVQI
ENLKTLQDKGCPKSYWEQPDAIFYDEHIEEFLESDKVTLVVSDEFENDLE
YANSWINDYAGPHLHRGYSFSAIARLSTEGTVEVILQKEKHIYERKRDGY
FRLMNELFELETFLQSPKIVRIGTKRKYNLRERKRK Run BLAST on NCBI transcript from alignment at sc0000001:1843869..1846692+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000092 ID=TCONS_00000092|Name=TCONS_00000092|organism=Clytia hemisphaerica|type=transcript|length=2824bp|location=Sequence derived from alignment at sc0000001:1843869..1846692+ (Clytia hemisphaerica)
ctcacatcctttttctgataaacatacaaatttTCAGCCTTCAACtattt
tttcctccatttccagaaacatttgttAATCAACAGTTGCAACTTTTTTT
TCTCCCATggaattcaaattttcaaatgtcgCAAAAACGTTCTGCAATTT
ACCAATTTCCCGTCTAGctcgtgtccacagtgttaaaTACCGCTAGAAAG
CTAAGACCACTGGCTTTCTTTTATTAAAAACTGGAatgctttagcataca
tagaagaaaagttagaagcgttcaaagttcacggaaaaatgaaatatttg
gttTGATGTCAACAAAAGGTGtgtgacttctggagtcgctaaaTTATAAT
CAAACGGCTGAATTATTCAAGTccaatcaaacttaatcgaacgacaAATG
TTCTATTTAAAAAAGTCACTAAGATTGTGAGTATTGCCAGACAgtgtttc
agctagatcttattttttccctaaattatgctaaacgaccccacttgTTC
ACTTCTTCTGGTATGAAATCGTAATAAGGAAACTTAGAAACTTACTAAAC
TAAGCGGTGCTGCAAATAACAACTGATGActggtaattaccggtcatctT
GTAGTTTCTACCGGCCATTCTGAAGCTCAATCTTTCATTTTGTCCAGTTA
AAATTTGAAGACTAGAGGCTTTAGATACTTAAAATAGCGCTTCTAATTTA
AGAGTCGAATAGATTTTAAATTAGTGTTTACTGTAGCCAATCTCAAGATT
ATTTCGGACTTTTCTAAACAGGTTCTGCTAGACCTCCCgctcaaattatt
tttgttgtGTTCAAAAAATTACTggccaactgaaatttcctcatTTGCAG
cgcttctttttcattttgaaagttAGAAAAAAAACTAGTACGCTTCTATA
TGCTTTTTGAAGAGCCTCCCTCCTCCCCCCTCCCCCTCAGAGTTTACATA
CTTTTTGAAGGGCCCATACATACCTTATAACAGATTTTTAAGACAAAAGA
ATTACTTTGATCTTATCTACGTCACTAATGTTTATTAAATCTATATTGAA
TCAATATTACGATcactttatatttttcattgatCATAATAGGAATGGAG
AATCAATTGCTGAAGattggaaaaaatgaaacaGTTGCTTCCTACCAAGA
GGCCTTTTTTGTTGCTGTTGACAGACTTAGCAGTTCTGACTGCACCAAAG
CAGACCACAAGAAATTTGTTGCTCTATGCAAGAAAATTAAAGATGTACAC
TTCTTATGCAAAATCACTGAGAGGCTGCTAAGGTTAACCCCATATGTTGC
ATTATATTACGAAAACGAGGGTTTTATCGAAATGCTAGCTTCGTTGCTGG
AAACCTTGTTGAAGTTGTTAACCTCTAAATCTTACAGCAAAGCCAAGCCT
GTGAAGATCGATTCTATGTCTGGTGTGGTTATTACACTTTTTGCTAATGT
TAATGATGGTTTGTTCAATCCAGATATTCTAACCAAATTGATATCCAACC
AGTATATCTCCCAAGAGCCATCAACTATTGAGGCTATTCTATGGGGTTTG
TTGAGAAAGGATTATTTggtcaaaaaagatttgacatCTAATAAGAACTT
TTGCACCTTGTTTCGTCAATTTGGAATTGCAACTGCTAAAACCAAAACAG
CCCAATTTTATCGCTATTACATAGCAATCATCCAATTTCTAGTCAAGAAT
TATAACTGGGAATTGGCAAAGGAGCTNTATTACATAGCAATCATCCAATT
TCTAGTCAAGAATTATGACTGGGAATTGGCAAAGGAGCTTCTACCTTCAG
TTCTTGATATCTCAGATAATAATGAAGATTTTGAGTATTTCTTTGCACTC
TTTGAAGGCTTGGAATCAGTAAAATCTGAACATCTCAAAATACTTGTTCA
AAGTGGTATTTCATTTTTCGCAAAGGCTGTTTCTCGTGAAAAATTGTATG
GTATTGGATATATTGATATATTTGAATACCAAAGCATGTTGAAGTatcta
aaaattgtttttaaagatGATTTTTATTGCAATACAGCCAAACAGCTTAC
AACCCTTGATGAGTTCAAGTCTAAAGATTATGAAAAAATGTGTAACACTA
CTAAAGAAAGTATTTTGCAAAGACTgattcaagatttgaaaaaggATTTC
TATTTTAAGGAATCTTACATTGATCTAGTACGTGTTCAGATAGAAAACCT
AAAGACGCTACAAGACAAAGGGTGTCCAAAATCGTATTGGGAGCAGCCAG
ATGCCATTTTTTATGACGAACATATTGAAGAATTTTTAGAAAGTGATAAA
GTGACACTAGTTGTTTctgatgaatttgaaaatgacTTGGAATATGCAAA
TTCATGGATTAATGATTATGCCGGACCACATCTTCACAGAGGTTATAGTT
TCAGTGCTATCGCAAGGTTATCCACAGAAGGCACAGTTGAAGTTATActg
caaaaagaaaaacatatatATGAAAGGAAACGAGATGGATATTTTAGACT
GATGAATGAATTATTTGAATTGGAAACTTTCTTGCAGTCTCCAAAGATAG
TGCGTattggcacaaaaaggaaatacAATCTCagagaacgaaaaagaaaa
taaatcttaTTGTAGAAAATCGTATCTTATCGtagaaaattttcttaatt
catCCAATACCTCACTTTTTCAATTGTTTGAGTGAGATTAGGTAGATAAT
TCATAAAATTGTAGCAAGACCgtaattattttattaatttctaggaattt
ttcaaaattttgataaaaacttaactaaaaatttttttaacatgttTCAT
GTGTTTTACCCTTTCTGGTATTGC Coding sequence (CDS) from alignment at sc0000001:1843869..1846692+ >TCONS_00000092 ID=TCONS_00000092|Name=TCONS_00000092|organism=Clytia hemisphaerica|type=CDS|length=4383bp|location=Sequence derived from alignment at sc0000001:1843869..1846692+ (Clytia hemisphaerica)
ATGTCAACAAAAGGAATGGAGAATCAATTGCTGAAGattggaaaaaatga
aacaGTTGCTTCCTACCAAGAGGCCTTTTTTGTTGCTGTTGACAGACTTA
GCAGTTCTGACTGCACCAAAGCAGACCACAAGAAATTTGTTGCTCTATGC
AAGAAAATTAAAGATGTACACTTCTTATGCAAAATCACTGAGAGGCTGCT
AAGGTTAACCCCATATGTTGCATTATATTACGAAAACGAGGGTTTTATCG
AAATGCTAGCTTCGTTGCTGGAAACCTTGTTGAAGTTGTTAACCTCTAAA
TCTTACAGCAAAGCCAAGCCTGTGAAGATCGATTCTATGTCTGGTGTGGT
TATTACACTTTTTGCTAATGTTAATGATGGTTTGTTCAATCCAGATATTC
TAACCAAATTGATATCCAACCAGTATATCTCCCAAGAGCCATCAACTATT
GAGGCTATTCTATGGGGTTTGTTGAGAAAGGATTATTTggtcaaaaaaga
tttgacatCTAATAAGAACTTTTGCACCTTGTTTCGTCAATTTGGAATTG
CAACTGCTAAAACCAAAACAGCCCAATTTTATCGCTATTACATAGCAATC
ATCCAATTTCTAGTCAAGAATTATGACTGGGAATTGGCAAAGGAGCTTCT
ACCTTCAGTTCTTGATATCTCAGATAATAATGAAGATTTTGAGTATTTCT
TTGCACTCTTTGAAGGCTTGGAATCAGTAAAATCTGAACATCTCAAAATA
CTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGTTTCTCGTGAAAA
ATTGTATGGTATTGGATATATTGATATATTTGAATACCAAAGCATGTTGA
AGTatctaaaaattgtttttaaagatGATTTTTATTGCAATACAGCCAAA
CAGCTTACAACCCTTGATGAGTTCAAGTCTAAAGATTATGAAAAAATGTG
TAACACTACTAAAGAAAGTATTTTGCAAAGACTgattcaagatttgaaaa
aggATTTCTATTTTAAGGAATCTTACATTGATCTAGTACGTGTTCAGATA
GAAAACCTAAAGACGCTACAAGACAAAGGGTGTCCAAAATCGTATTGGGA
GCAGCCAGATGCCATTTTTTATGACGAACATATTGAAGAATTTTTAGAAA
GTGATAAAGTGACACTAGTTGTTTctgatgaatttgaaaatgacTTGGAA
TATGCAAATTCATGGATTAATGATTATGCCGGACCACATCTTCACAGAGG
TTATAGTTTCAGTGCTATCGCAAGGTTATCCACAGAAGGCACAGTTGAAG
TTATActgcaaaaagaaaaacatatatATGAAAGGAAACGAGATGGATAT
TTTAGACTGATGAATGAATTATTTGAATTGGAAACTTTCTTGCAGTCTCC
AAAGATAGTGCGTattggcacaaaaaggaaatacAATCTCagagaacgaa
aaagaaaataaATGTCAACAAAAGGAATGGAGAATCAATTGCTGAAGatt
ggaaaaaatgaaacaGTTGCTTCCTACCAAGAGGCCTTTTTTGTTGCTGT
TGACAGACTTAGCAGTTCTGACTGCACCAAAGCAGACCACAAGAAATTTG
TTGCTCTATGCAAGAAAATTAAAGATGTACACTTCTTATGCAAAATCACT
GAGAGGCTGCTAAGGTTAACCCCATATGTTGCATTATATTACGAAAACGA
GGGTTTTATCGAAATGCTAGCTTCGTTGCTGGAAACCTTGTTGAAGTTGT
TAACCTCTAAATCTTACAGCAAAGCCAAGCCTGTGAAGATCGATTCTATG
TCTGGTGTGGTTATTACACTTTTTGCTAATGTTAATGATGGTTTGTTCAA
TCCAGATATTCTAACCAAATTGATATCCAACCAGTATATCTCCCAAGAGC
CATCAACTATTGAGGCTATTCTATGGGGTTTGTTGAGAAAGGATTATTTg
gtcaaaaaagatttgacatCTAATAAGAACTTTTGCACCTTGTTTCGTCA
ATTTGGAATTGCAACTGCTAAAACCAAAACAGCCCAATTTTATCGCTATT
ACATAGCAATCATCCAATTTCTAGTCAAGAATTATGACTGGGAATTGGCA
AAGGAGCTTCTACCTTCAGTTCTTGATATCTCAGATAATAATGAAGATTT
TGAGTATTTCTTTGCACTCTTTGAAGGCTTGGAATCAGTAAAATCTGAAC
ATCTCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCGCAAAGGCTGTT
TCTCGTGAAAAATTGTATGGTATTGGATATATTGATATATTTGAATACCA
AAGCATGTTGAAGTatctaaaaattgtttttaaagatGATTTTTATTGCA
ATACAGCCAAACAGCTTACAACCCTTGATGAGTTCAAGTCTAAAGATTAT
GAAAAAATGTGTAACACTACTAAAGAAAGTATTTTGCAAAGACTgattca
agatttgaaaaaggATTTCTATTTTAAGGAATCTTACATTGATCTAGTAC
GTGTTCAGATAGAAAACCTAAAGACGCTACAAGACAAAGGGTGTCCAAAA
TCGTATTGGGAGCAGCCAGATGCCATTTTTTATGACGAACATATTGAAGA
ATTTTTAGAAAGTGATAAAGTGACACTAGTTGTTTctgatgaatttgaaa
atgacTTGGAATATGCAAATTCATGGATTAATGATTATGCCGGACCACAT
CTTCACAGAGGTTATAGTTTCAGTGCTATCGCAAGGTTATCCACAGAAGG
CACAGTTGAAGTTATActgcaaaaagaaaaacatatatATGAAAGGAAAC
GAGATGGATATTTTAGACTGATGAATGAATTATTTGAATTGGAAACTTTC
TTGCAGTCTCCAAAGATAGTGCGTattggcacaaaaaggaaatacAATCT
CagagaacgaaaaagaaaataaATGTCAACAAAAGGAATGGAGAATCAAT
TGCTGAAGattggaaaaaatgaaacaGTTGCTTCCTACCAAGAGGCCTTT
TTTGTTGCTGTTGACAGACTTAGCAGTTCTGACTGCACCAAAGCAGACCA
CAAGAAATTTGTTGCTCTATGCAAGAAAATTAAAGATGTACACTTCTTAT
GCAAAATCACTGAGAGGCTGCTAAGGTTAACCCCATATGTTGCATTATAT
TACGAAAACGAGGGTTTTATCGAAATGCTAGCTTCGTTGCTGGAAACCTT
GTTGAAGTTGTTAACCTCTAAATCTTACAGCAAAGCCAAGCCTGTGAAGA
TCGATTCTATGTCTGGTGTGGTTATTACACTTTTTGCTAATGTTAATGAT
GGTTTGTTCAATCCAGATATTCTAACCAAATTGATATCCAACCAGTATAT
CTCCCAAGAGCCATCAACTATTGAGGCTATTCTATGGGGTTTGTTGAGAA
AGGATTATTTggtcaaaaaagatttgacatCTAATAAGAACTTTTGCACC
TTGTTTCGTCAATTTGGAATTGCAACTGCTAAAACCAAAACAGCCCAATT
TTATCGCTATTACATAGCAATCATCCAATTTCTAGTCAAGAATTATGACT
GGGAATTGGCAAAGGAGCTTCTACCTTCAGTTCTTGATATCTCAGATAAT
AATGAAGATTTTGAGTATTTCTTTGCACTCTTTGAAGGCTTGGAATCAGT
AAAATCTGAACATCTCAAAATACTTGTTCAAAGTGGTATTTCATTTTTCG
CAAAGGCTGTTTCTCGTGAAAAATTGTATGGTATTGGATATATTGATATA
TTTGAATACCAAAGCATGTTGAAGTatctaaaaattgtttttaaagatGA
TTTTTATTGCAATACAGCCAAACAGCTTACAACCCTTGATGAGTTCAAGT
CTAAAGATTATGAAAAAATGTGTAACACTACTAAAGAAAGTATTTTGCAA
AGACTgattcaagatttgaaaaaggATTTCTATTTTAAGGAATCTTACAT
TGATCTAGTACGTGTTCAGATAGAAAACCTAAAGACGCTACAAGACAAAG
GGTGTCCAAAATCGTATTGGGAGCAGCCAGATGCCATTTTTTATGACGAA
CATATTGAAGAATTTTTAGAAAGTGATAAAGTGACACTAGTTGTTTctga
tgaatttgaaaatgacTTGGAATATGCAAATTCATGGATTAATGATTATG
CCGGACCACATCTTCACAGAGGTTATAGTTTCAGTGCTATCGCAAGGTTA
TCCACAGAAGGCACAGTTGAAGTTATActgcaaaaagaaaaacatatatA
TGAAAGGAAACGAGATGGATATTTTAGACTGATGAATGAATTATTTGAAT
TGGAAACTTTCTTGCAGTCTCCAAAGATAGTGCGTattggcacaaaaagg
aaatacAATCTCagagaacgaaaaagaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000092-exon-sc0000001-1491911889:1843869..1844186 | TCONS_00000092-exon-sc0000001-1491911889:1843869..1844186 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1510915933:1843869..1844186 | TCONS_00000092-exon-sc0000001-1510915933:1843869..1844186 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1575043694:1843869..1844186 | TCONS_00000092-exon-sc0000001-1575043694:1843869..1844186 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1491911889:1844961..1845538 | TCONS_00000092-exon-sc0000001-1491911889:1844961..1845538 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1510915933:1844961..1845538 | TCONS_00000092-exon-sc0000001-1510915933:1844961..1845538 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1575043694:1844961..1845538 | TCONS_00000092-exon-sc0000001-1575043694:1844961..1845538 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1491911889:1845602..1846692 | TCONS_00000092-exon-sc0000001-1491911889:1845602..1846692 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1510915933:1845602..1846692 | TCONS_00000092-exon-sc0000001-1510915933:1845602..1846692 | Clytia hemisphaerica | exon |
| TCONS_00000092-exon-sc0000001-1575043694:1845602..1846692 | TCONS_00000092-exon-sc0000001-1575043694:1845602..1846692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1843869..1846692 + |
Blast
The following BLAST results are available for this feature:
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