TCONS_00000087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000087
Unique NameTCONS_00000087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000087 ID=TCONS_00000087|Name=TCONS_00000087|organism=Clytia hemisphaerica|type=transcript|length=348bp
CTTGTAACTGATTCTCTAAATAAAGCCCATAGCCAGAAAGTGACTCCAGC
AAATAATTCAACATTGCTGACTGTGCAAAAAGGGGCAAATGCTGATTTCC
AGTGGAATTACAACGTGAAATCTAGCGAAGTTTTACTAAACTTCAAGCTT
TTCGACAATAAAACAACACTTTTGTGGGACGATAGATCCCGTACAGTAAC
AGAGGAAGGAAAGCGAATCTTTGGAAATAGGCTATCAGTTGATAAgtctt
caaatttttgaaagtcgTCTTGGAAAAAACAACTTGGAACGATACAGGAG
TGTCATTCAAGCTCACTGGTGGAGTGTTTGATCAGGGTACATTGGATT
Run BLAST on NCBI

transcript from alignment at sc0000001:1795884..1796641+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000087 ID=TCONS_00000087|Name=TCONS_00000087|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at sc0000001:1795884..1796641+ (Clytia hemisphaerica)
CTTGTAACTGATTCTCTAAATAAAGGTAAATTGAATATTAAAAACTCTTT
TGAAATCTATTTACAAATGTACTGCAATTGGCAATTTGggttttttaacg
ttttttagaatttaaagctcGAGCGAGAATTGCAATTTCCGAGTTCCTTT
TTATTACATTGGATTATcgtttgggaggggttaagtggcttccagtaTAT
ATCTATAGGCGTTGCGTTGTTTAATTTGAAGCACTTAAAAACCACTtgtg
gttttaaagttttgagggaattctccttttgtgccaaatatcatTGCGGT
GATTGTAGTGTTAGTTAAGATTTTCCATAATATGTTTATTTGATAGCGGG
CGATGTCCAGCTAGAAATCAGGTTTCCTAAAGATCCTTAaatttaaaact
gatttttctttcttatttttaactcttttgtTCAGCCCATAGCCAGAAAG
TGACTCCAGCAAATAATTCAACATTGCTGACTGTGCAAAAAGGGGCAAAT
GCTGATTTCCAGTGGAATTACAACGTGAAATCTAGCGAAGTTTTACTAAA
CTTCAAGCTTTTCGACAATAAAACAACACTTTTGTGGGACGATAGATCCC
GTACAGTAACAGAGGAAGGAAAGCGAATCTTTGGAAATAGGCTATCAGTT
GATAAgtcttcaaatttttgaaagtcgTCTTGGAAAAAACAACTTGGAAC
GATACAGGAGTGTCATTCAAGCTCACTGGTGGAGTGTTTGATCAGGGTAC
ATTGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000044XLOC_000044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000087-exon-sc0000001-1491911889:1795884..1795908TCONS_00000087-exon-sc0000001-1491911889:1795884..1795908Clytia hemisphaericaexon
TCONS_00000087-exon-sc0000001-1510915933:1795884..1795908TCONS_00000087-exon-sc0000001-1510915933:1795884..1795908Clytia hemisphaericaexon
TCONS_00000087-exon-sc0000001-1575043694:1795884..1795908TCONS_00000087-exon-sc0000001-1575043694:1795884..1795908Clytia hemisphaericaexon
TCONS_00000087-exon-sc0000001-1491911889:1796319..1796641TCONS_00000087-exon-sc0000001-1491911889:1796319..1796641Clytia hemisphaericaexon
TCONS_00000087-exon-sc0000001-1510915933:1796319..1796641TCONS_00000087-exon-sc0000001-1510915933:1796319..1796641Clytia hemisphaericaexon
TCONS_00000087-exon-sc0000001-1575043694:1796319..1796641TCONS_00000087-exon-sc0000001-1575043694:1796319..1796641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1795884..1796641 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06962	3.38038	5.36335	2.95272	0	0.543981	0	0	0	0.127773	0	0	2.20414	3.87766	0.0603972	0.240358	0.077729	0.42885	10.1272	6.38796	2.07892	0.385632	0.84659	0.703046	0	0.391067	0	0	0.200674	0.762672
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top