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TCONS_00000084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000084
Unique NameTCONS_00000084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000084 ID=TCONS_00000084|Name=TCONS_00000084|organism=Clytia hemisphaerica|type=transcript|length=2401bp
GAGAGAACAATTAAAGAACGTTAATGATGCGTGCATGACAAATGATATAC
CATAATTATTCCCTTTCGTTTTTGTAGTCTTTCATAAAGATACAAATAGA
CTGTTAATGTGATGCTCTCTCAGTTAGTTCGTTAAATAAATATACCAGTG
TCAAGACGAGTGAGTGGTTATTGTGAAAATtactttgaatatttttgtca
attttttggagTCGTTTTGGAAAATATTGTAAATGAAAGGAATTGTATGT
TGTGATTGAAGAATTGTGAAACATGATTTTGAACATCCAACCAACAGCGT
ACCACAAACGCGATACATTTTACACCTTGACTGGTGTCCCTTCGGTCGAT
AAGGCGCTCTCGTCGCCGACCAGCCACGTCGCAGGGTCCTCGTGTACCCA
ACCTAAACGAAAAGCGGTTCCACGCAACAAACAACGCACACAAACAGAAC
CATTGATTCGCAACTTCATCTCGGGTCCACAATCAGCATGGTGTATGGTC
AAATGCTACGAACGCCAATTCCACATTGCATCTTTCCAAATGGAAGAAGC
TGTCATTTGTGTTGACGGCACACACACATTCAGTGATAAAAACCGCATCG
CCTTTGCCACCCTCCCCGTACGGGCGGACGATCCAAAAGTCGCCAAAGTG
AAAAGTTGTATCGGGAAAGGAGTCCAGTTACACCAAGACGAGCGACAAAA
CTTGTGGGCTACGCGACTTGGTAAAAACCCTATATTTGTGCGTGGTCATA
CCTTATGTCCAGAACTGGTCAAACTGAACGGCAAACTTACGCAAGGCGTA
CCCATGAAAGTGTTAGATACGGCCGCTTTCAAGGATTACATGCGTGAAGA
AGTTGAGAAAAATGGCGGCGTCACTGAAGACCTCAAAGATCGAATCATGT
CTAAACTGAAGATTTGCATGAGTTTCATCAAAGATACACACTTAGACGAA
GAAACGCCGTGTTGGTTCGAAATTTGGCTTGTCAAAGTCAAGGAGCATGT
TAGACGTTACCTTGACAACCAACAGAAACGAGAGAAACGAAAATCAGGAC
ATTTAGACATGCGTATTACACAAACACAAGAATCCGTTAAACGAATTGCA
GCCATGCCTGAAATGAGGCGCGCTAAAAGCGGTGATCATTTACGTAGACC
ACGAAGTAATACGGCAGGCCCGAATCCTGCCGAAACGACGGGAAAACCGG
CCCGTTCATCAAGACCGCCGTCACAAATAATCGGCGAAAAATCCATCGCA
CGTCATCGAGGGACGACATCAGCAGACACAACGGCGCAATGGCGTGTGGA
ACAAAAGATTACGCAAGAAATGTTACAACGTGAACGTAGTATGGACATGA
TTCGACGTGAGAAAAGCATGGACGTACGGCTGGAGTCGCGACTTTTAATG
GAACGCGAATATCGAAACAGTATGGGAAAACCTTTAGTTGAATCTCAACA
CGTGAACAGAGTGAGGGGTAGCGAGAAAAGTAGCCCCGGTCAAAGTCCAC
CGCAATCACTGGCCCGTAGTACGGGAAGCAGTATGGGATCACGTAAAGAC
AATTCGACCACAGCCAACGATTCCCCTCGTATAGTTAACGGTCCACATAC
GCCCGTTTCACGTATGCCCGCCCACTCTCAACAAAATCCTCATGAAGAAT
TTCGAAGGGGCGGAAGTGTGGCGGCTGCCCGTGAAGGAATGAGTTATCGA
CAAGTATTTGGACTTCAATCATCAGACTATTTATTTAACGTGACGCCGCC
TAATTACACGCGCCATCGACGTTTCTCAGACTCAGATACTGAATCCCTtc
acaatttcaatttcatacaCAAAGTAATCACACAACCTTCAACGCCCACT
CACCAATCCACCCAACAATTAACAAACGCCCAACAAACGCCCTCCCAACA
AACAGAAGATCCGAAGAAATCGAAAGTACTTCAACAACCGAAAAGttgga
tgaaaaaagtacgACGAAAGTCGGAAGATAATCCAAAACGAAAAGTTGTA
GCGCAACTTTCTAACAAATAAATAGATAGGATGagatattttgactttta
gatGAACATATTATTTTTAGGAGAGGAATTTAAGTCTTTTTGCTTAATAT
TTACATTAAGattcatttttatgacgtctAATTTTCTTAGTACTAGATAT
TGTATGAAATTAAGTATTCTTAGAGTGCCTTTAAACCATTTAATCTTAAC
TGCTAttgaaatttagaaaacttggaaatttatttggaaatttttattct
caaaaattttggcTTACAAATTATCTTCAATGCAtctcaatattttttct
ttttaattttctgtAATATAGTTATTGGTAAAAAAAcgaagttatttttt
tctgtttcatttttgtaaattatgtGAAGAAACAAGCACCGTTATACAaa
g
Run BLAST on NCBI

transcript from alignment at sc0000001:1741844..1745865+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000084 ID=TCONS_00000084|Name=TCONS_00000084|organism=Clytia hemisphaerica|type=transcript|length=4022bp|location=Sequence derived from alignment at sc0000001:1741844..1745865+ (Clytia hemisphaerica)
GAGAGAACAATTAAAGAACGTTAATGATGCGTGCATGACAAATGATATAC CATAATTATTCCCTTTCGTTTTTGTAGTCTTTCATAAAGATACAAATAGA CTGTTAATGTGATGCTCTCTCAGTTAGTTCGTTAAATAAATATACCAGTG TCAAGACGAGTGAGTGGTTATTGTGAAAATtactttgaatatttttgtca attttttggagTCGTTTTGGAAAATATTGTAAATGAAAGGAATTGTATGT TGTGATTGAAGAATTGTGAAACATGATTTTGAACATCCAACCAACAGCGT ACCACAAACGCGATACATTTTACACCTTGACTGGTGTCCCTTCGGTCGAT AAGGCGCTCTCGTCGCCGACCAGCCACGTCGCAGGGTCCTCGTGTACCCA ACCTAAACGAAAAGCGGTAAGGAACGGacttaaaacttttatttatatag CGGAAGGGGGAGGTAACGTTTTTTATGAAACCTTAGTCTTAGTTCGACTG ATTTAAGGGTAGATACTGAATTAGTTCAATTGAAATTGGGCTTTGACTGA GTTTAATTTGTGAATATAGTGGacggagtctccataactcgaacacgcac gaggAACACAAAGTTTTtctcgagttaaggaaatttcgaaatatggagta aggtttactATAAAGcgttgttaactgaagggaccatcaAACTTCATTTG ACTTGAGGAGATATTCGAGATGTGGAGGTTCGAGTTGAAAAGACTCTTTA CTGTATTTATTGTATTATATGAGAGCGTTTTCAATGCTGACTTTCGTAAC TTAcaagtttctttattttgactTGTTGTGGTGATGAAAAAATGCTTgtc tttctataaaaaaaattcactttaaagaTGCTTATCTTACAATGATCACG TTATTAGATTTTAATCTCCATTTTTTGATACGAGTTTCTGTGGTCTGATT CATACATCTTCTGTGTTGgctctttaaactttttgtgaCAACATTTTTAG CATTCTTGCGAAAGTTTTAAAGTTCTAAAGGAAATACGTAAGCATAAAAT gatgatcaaaaataaaaatccaaaaaatcacGCCTGCTTTTTCTTAGAgt tccatttttcaaatatttttggtttttttaatGACATCCTATGAACTTAT GATTATCGAACTTCCTGGACATTTTTTGCTTCTATTTTTGCTTCTAATCC GCCTCATTAGAAAGCTTGTTTCAAAACTTGATGGTTTCCTTTGGAAACCA AAATTAATTTCCTTTCAATACTTGAGTCGATATTTAACGTGGATTGCCCA GCAATTtaagacttttagacagtctttcgattgttttcacggggtccacg gtcAGCCGGcttggctatctatgaactgaacggggCATTGAAAAGAACGG GGATTCGAAAAATAAACCGTCTGGTTTGTAATGCTGACACCTAAGATAGC TTGCCCATCAATCTTTAAGTCTATGGATTcggattttgaatatttttatt ttctttatcattCTCAGGTTCCACGCAACAAACAACGCACACAAACAGAA CCATTGATTCGCAACTTCATCTCGGGTCCACAATCAGCATGGTGTATGGT CAAATGCTACGAACGCCAATTCCACATTGCATCTTTCCAAATGGAAGAAG CTGTCATTTGTGTTGACGGCACACACACATTCAGTGATAAAAACCGCATC GCCTTTGCCACCCTCCCCGTACGGGCGGACGATCCAAAAGTCGCCAAAGT GAAAAGTTGTATCGGGAAAGGAGTCCAGTTACACCAAGACGAGCGACAAA ACTTGTGGGCTACGCGACTTGGTAAAAACCCTATATTTGTGCGTGGTCAT ACCTTATGTCCAGAACTGGTCAAACTGAACGGCAAACTTACGCAAGGCGT ACCCATGAAAGTGTTAGATACGGCCGCTTTCAAGGATTACATGCGTGAAG AAGTTGAGAAAAATGGCGGCGTCACTGAAGACCTCAAAGATCGAATCATG TCTAAACTGAAGGTAAGCAATTTtacatttgaatttttaaaatcatatat atttctaaaaaaataacttGTCACAGAAATATCTGATTTTAGTGGAAGCT CTATCTTGTTTATCgagcactttttgtgttgatttGTTCACCAAAGAAAT AATGATATTTGAACTTTTGAGGAATACGCCTTCCCGATATCGATTGTCCA ATACAAAAACACAGGAAATTCAACATTAAAGCCAGGCGTATATGTAAGTA CGATTCATTTTATGTCACTTTCTTCTGCCAACCAAAGCTTATAATAAAAT GTTCCCTTTCTATTCTTCAGATTTGCATGAGTTTCATCAAAGATACACAC TTAGACGAAGAAACGCCGTGTTGGTTCGAAATTTGGCTTGTCAAAGTCAA GGAGCATGTTAGACGTAAGTTCTAGATCCTGCTTTTCAATTTATGTATTT ACCGCCGCTAAATGAATTTCAACAGCCTACGACTAATGGATCTGACGTTT ATGGCTATACtctttaagccattttaatcCTGATGAAGAAATTTTGATCT TGAAAGATTGATTAAATCCAAATTTAGTTCATCTCTTGATAttgtttctt tatttctttatttcttgattttccaGGTTACCTTGACAACCAACAGAAAC GAGAGAAACGAAAATCAGGACATTTAGACATGCGTATTACACAAACACAA GAATCCGTTAAACGAATTGCAGCCATGCCTGAAATGAGGCGCGCTAAAAG CGGTGATCATTTACGTAGACCACGAAGTAATACGGCAGGCCCGAATCCTG CCGAAACGACGGGAAAACCGGCCCGTTCATCAAGACCGCCGTCACAAATA ATCGGCGAAAAATCCATCGCACGTCATCGAGGGACGACATCAGCAGACAC AACGGCGCAATGGCGTGTGGAACAAAAGATTACGCAAGAAATGTTACAAC GTGAACGTAGTATGGACATGATTCGACGTGAGAAAAGCATGGACGTACGG CTGGAGTCGCGACTTTTAATGGAACGCGAATATCGAAACAGTATGGGAAA ACCTTTAGTTGAATCTCAACACGTGAACAGAGTGAGGGGTAGCGAGAAAA GTAGCCCCGGTCAAAGTCCACCGCAATCACTGGCCCGTAGTACGGGAAGC AGTATGGGATCACGTAAAGACAATTCGACCACAGCCAACGATTCCCCTCG TATAGTTAACGGTCCACATACGCCCGTTTCACGTATGCCCGCCCACTCTC AACAAAATCCTCATGAAGAATTTCGAAGGGGCGGAAGTGTGGCGGCTGCC CGTGAAGGAATGAGTTATCGACAAGTATTTGGACTTCAATCATCAGACTA TTTATTTAACGTGACGCCGCCTAATTACACGCGCCATCGACGTTTCTCAG ACTCAGATACTGAATCCCTtcacaatttcaatttcatacaCAAAGTAATC ACACAACCTTCAACGCCCACTCACCAATCCACCCAACAATTAACAAACGC CCAACAAACGCCCTCCCAACAAACAGAAGATCCGAAGAAATCGAAAGTAC TTCAACAACCGAAAAGttggatgaaaaaagtacgACGAAAGTCGGAAGAT AATCCAAAACGAAAAGTTGTAGCGCAACTTTCTAACAAATAAATAGATAG GATGagatattttgacttttagatGAACATATTATTTTTAGGAGAGGAAT TTAAGTCTTTTTGCTTAATATTTACATTAAGattcatttttatgacgtct AATTTTCTTAGTACTAGATATTGTATGAAATTAAGTATTCTTAGAGTGCC TTTAAACCATTTAATCTTAACTGCTAttgaaatttagaaaacttggaaat ttatttggaaatttttattctcaaaaattttggcTTACAAATTATCTTCA ATGCAtctcaatattttttctttttaattttctgtAATATAGTTATTGGT AAAAAAAcgaagttatttttttctgtttcatttttgtaaattatgtGAAG AAACAAGCACCGTTATACAaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000041XLOC_000041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000084-exon-sc0000001-1491911889:1741844..1742259TCONS_00000084-exon-sc0000001-1491911889:1741844..1742259Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1510915933:1741844..1742259TCONS_00000084-exon-sc0000001-1510915933:1741844..1742259Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1575043694:1741844..1742259TCONS_00000084-exon-sc0000001-1575043694:1741844..1742259Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1491911889:1743361..1743855TCONS_00000084-exon-sc0000001-1491911889:1743361..1743855Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1510915933:1743361..1743855TCONS_00000084-exon-sc0000001-1510915933:1743361..1743855Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1575043694:1743361..1743855TCONS_00000084-exon-sc0000001-1575043694:1743361..1743855Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1491911889:1744164..1744257TCONS_00000084-exon-sc0000001-1491911889:1744164..1744257Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1510915933:1744164..1744257TCONS_00000084-exon-sc0000001-1510915933:1744164..1744257Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1575043694:1744164..1744257TCONS_00000084-exon-sc0000001-1575043694:1744164..1744257Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1491911889:1744470..1745865TCONS_00000084-exon-sc0000001-1491911889:1744470..1745865Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1510915933:1744470..1745865TCONS_00000084-exon-sc0000001-1510915933:1744470..1745865Clytia hemisphaericaexon
TCONS_00000084-exon-sc0000001-1575043694:1744470..1745865TCONS_00000084-exon-sc0000001-1575043694:1744470..1745865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1741844..1745865 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3498 0.464613 0.265262 0.3336 3.00557 1.58923 8.27957 8.39516 1.84954 8.08069 9.84346 8.26275 8.54348 4.50308 8.2057 4.55127 0.606473 4.12944 0.964467 0.842574 1.46379 1.94277 1.20881 1.52087 4.25623 2.95313 144.555 113.42 4.1134 2.77488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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