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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000084 ID=TCONS_00000084|Name=TCONS_00000084|organism=Clytia hemisphaerica|type=transcript|length=2401bp
GAGAGAACAATTAAAGAACGTTAATGATGCGTGCATGACAAATGATATAC
CATAATTATTCCCTTTCGTTTTTGTAGTCTTTCATAAAGATACAAATAGA
CTGTTAATGTGATGCTCTCTCAGTTAGTTCGTTAAATAAATATACCAGTG
TCAAGACGAGTGAGTGGTTATTGTGAAAATtactttgaatatttttgtca
attttttggagTCGTTTTGGAAAATATTGTAAATGAAAGGAATTGTATGT
TGTGATTGAAGAATTGTGAAACATGATTTTGAACATCCAACCAACAGCGT
ACCACAAACGCGATACATTTTACACCTTGACTGGTGTCCCTTCGGTCGAT
AAGGCGCTCTCGTCGCCGACCAGCCACGTCGCAGGGTCCTCGTGTACCCA
ACCTAAACGAAAAGCGGTTCCACGCAACAAACAACGCACACAAACAGAAC
CATTGATTCGCAACTTCATCTCGGGTCCACAATCAGCATGGTGTATGGTC
AAATGCTACGAACGCCAATTCCACATTGCATCTTTCCAAATGGAAGAAGC
TGTCATTTGTGTTGACGGCACACACACATTCAGTGATAAAAACCGCATCG
CCTTTGCCACCCTCCCCGTACGGGCGGACGATCCAAAAGTCGCCAAAGTG
AAAAGTTGTATCGGGAAAGGAGTCCAGTTACACCAAGACGAGCGACAAAA
CTTGTGGGCTACGCGACTTGGTAAAAACCCTATATTTGTGCGTGGTCATA
CCTTATGTCCAGAACTGGTCAAACTGAACGGCAAACTTACGCAAGGCGTA
CCCATGAAAGTGTTAGATACGGCCGCTTTCAAGGATTACATGCGTGAAGA
AGTTGAGAAAAATGGCGGCGTCACTGAAGACCTCAAAGATCGAATCATGT
CTAAACTGAAGATTTGCATGAGTTTCATCAAAGATACACACTTAGACGAA
GAAACGCCGTGTTGGTTCGAAATTTGGCTTGTCAAAGTCAAGGAGCATGT
TAGACGTTACCTTGACAACCAACAGAAACGAGAGAAACGAAAATCAGGAC
ATTTAGACATGCGTATTACACAAACACAAGAATCCGTTAAACGAATTGCA
GCCATGCCTGAAATGAGGCGCGCTAAAAGCGGTGATCATTTACGTAGACC
ACGAAGTAATACGGCAGGCCCGAATCCTGCCGAAACGACGGGAAAACCGG
CCCGTTCATCAAGACCGCCGTCACAAATAATCGGCGAAAAATCCATCGCA
CGTCATCGAGGGACGACATCAGCAGACACAACGGCGCAATGGCGTGTGGA
ACAAAAGATTACGCAAGAAATGTTACAACGTGAACGTAGTATGGACATGA
TTCGACGTGAGAAAAGCATGGACGTACGGCTGGAGTCGCGACTTTTAATG
GAACGCGAATATCGAAACAGTATGGGAAAACCTTTAGTTGAATCTCAACA
CGTGAACAGAGTGAGGGGTAGCGAGAAAAGTAGCCCCGGTCAAAGTCCAC
CGCAATCACTGGCCCGTAGTACGGGAAGCAGTATGGGATCACGTAAAGAC
AATTCGACCACAGCCAACGATTCCCCTCGTATAGTTAACGGTCCACATAC
GCCCGTTTCACGTATGCCCGCCCACTCTCAACAAAATCCTCATGAAGAAT
TTCGAAGGGGCGGAAGTGTGGCGGCTGCCCGTGAAGGAATGAGTTATCGA
CAAGTATTTGGACTTCAATCATCAGACTATTTATTTAACGTGACGCCGCC
TAATTACACGCGCCATCGACGTTTCTCAGACTCAGATACTGAATCCCTtc
acaatttcaatttcatacaCAAAGTAATCACACAACCTTCAACGCCCACT
CACCAATCCACCCAACAATTAACAAACGCCCAACAAACGCCCTCCCAACA
AACAGAAGATCCGAAGAAATCGAAAGTACTTCAACAACCGAAAAGttgga
tgaaaaaagtacgACGAAAGTCGGAAGATAATCCAAAACGAAAAGTTGTA
GCGCAACTTTCTAACAAATAAATAGATAGGATGagatattttgactttta
gatGAACATATTATTTTTAGGAGAGGAATTTAAGTCTTTTTGCTTAATAT
TTACATTAAGattcatttttatgacgtctAATTTTCTTAGTACTAGATAT
TGTATGAAATTAAGTATTCTTAGAGTGCCTTTAAACCATTTAATCTTAAC
TGCTAttgaaatttagaaaacttggaaatttatttggaaatttttattct
caaaaattttggcTTACAAATTATCTTCAATGCAtctcaatattttttct
ttttaattttctgtAATATAGTTATTGGTAAAAAAAcgaagttatttttt
tctgtttcatttttgtaaattatgtGAAGAAACAAGCACCGTTATACAaa
g Run BLAST on NCBI transcript from alignment at sc0000001:1741844..1745865+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000084 ID=TCONS_00000084|Name=TCONS_00000084|organism=Clytia hemisphaerica|type=transcript|length=4022bp|location=Sequence derived from alignment at sc0000001:1741844..1745865+ (Clytia hemisphaerica)
GAGAGAACAATTAAAGAACGTTAATGATGCGTGCATGACAAATGATATAC
CATAATTATTCCCTTTCGTTTTTGTAGTCTTTCATAAAGATACAAATAGA
CTGTTAATGTGATGCTCTCTCAGTTAGTTCGTTAAATAAATATACCAGTG
TCAAGACGAGTGAGTGGTTATTGTGAAAATtactttgaatatttttgtca
attttttggagTCGTTTTGGAAAATATTGTAAATGAAAGGAATTGTATGT
TGTGATTGAAGAATTGTGAAACATGATTTTGAACATCCAACCAACAGCGT
ACCACAAACGCGATACATTTTACACCTTGACTGGTGTCCCTTCGGTCGAT
AAGGCGCTCTCGTCGCCGACCAGCCACGTCGCAGGGTCCTCGTGTACCCA
ACCTAAACGAAAAGCGGTAAGGAACGGacttaaaacttttatttatatag
CGGAAGGGGGAGGTAACGTTTTTTATGAAACCTTAGTCTTAGTTCGACTG
ATTTAAGGGTAGATACTGAATTAGTTCAATTGAAATTGGGCTTTGACTGA
GTTTAATTTGTGAATATAGTGGacggagtctccataactcgaacacgcac
gaggAACACAAAGTTTTtctcgagttaaggaaatttcgaaatatggagta
aggtttactATAAAGcgttgttaactgaagggaccatcaAACTTCATTTG
ACTTGAGGAGATATTCGAGATGTGGAGGTTCGAGTTGAAAAGACTCTTTA
CTGTATTTATTGTATTATATGAGAGCGTTTTCAATGCTGACTTTCGTAAC
TTAcaagtttctttattttgactTGTTGTGGTGATGAAAAAATGCTTgtc
tttctataaaaaaaattcactttaaagaTGCTTATCTTACAATGATCACG
TTATTAGATTTTAATCTCCATTTTTTGATACGAGTTTCTGTGGTCTGATT
CATACATCTTCTGTGTTGgctctttaaactttttgtgaCAACATTTTTAG
CATTCTTGCGAAAGTTTTAAAGTTCTAAAGGAAATACGTAAGCATAAAAT
gatgatcaaaaataaaaatccaaaaaatcacGCCTGCTTTTTCTTAGAgt
tccatttttcaaatatttttggtttttttaatGACATCCTATGAACTTAT
GATTATCGAACTTCCTGGACATTTTTTGCTTCTATTTTTGCTTCTAATCC
GCCTCATTAGAAAGCTTGTTTCAAAACTTGATGGTTTCCTTTGGAAACCA
AAATTAATTTCCTTTCAATACTTGAGTCGATATTTAACGTGGATTGCCCA
GCAATTtaagacttttagacagtctttcgattgttttcacggggtccacg
gtcAGCCGGcttggctatctatgaactgaacggggCATTGAAAAGAACGG
GGATTCGAAAAATAAACCGTCTGGTTTGTAATGCTGACACCTAAGATAGC
TTGCCCATCAATCTTTAAGTCTATGGATTcggattttgaatatttttatt
ttctttatcattCTCAGGTTCCACGCAACAAACAACGCACACAAACAGAA
CCATTGATTCGCAACTTCATCTCGGGTCCACAATCAGCATGGTGTATGGT
CAAATGCTACGAACGCCAATTCCACATTGCATCTTTCCAAATGGAAGAAG
CTGTCATTTGTGTTGACGGCACACACACATTCAGTGATAAAAACCGCATC
GCCTTTGCCACCCTCCCCGTACGGGCGGACGATCCAAAAGTCGCCAAAGT
GAAAAGTTGTATCGGGAAAGGAGTCCAGTTACACCAAGACGAGCGACAAA
ACTTGTGGGCTACGCGACTTGGTAAAAACCCTATATTTGTGCGTGGTCAT
ACCTTATGTCCAGAACTGGTCAAACTGAACGGCAAACTTACGCAAGGCGT
ACCCATGAAAGTGTTAGATACGGCCGCTTTCAAGGATTACATGCGTGAAG
AAGTTGAGAAAAATGGCGGCGTCACTGAAGACCTCAAAGATCGAATCATG
TCTAAACTGAAGGTAAGCAATTTtacatttgaatttttaaaatcatatat
atttctaaaaaaataacttGTCACAGAAATATCTGATTTTAGTGGAAGCT
CTATCTTGTTTATCgagcactttttgtgttgatttGTTCACCAAAGAAAT
AATGATATTTGAACTTTTGAGGAATACGCCTTCCCGATATCGATTGTCCA
ATACAAAAACACAGGAAATTCAACATTAAAGCCAGGCGTATATGTAAGTA
CGATTCATTTTATGTCACTTTCTTCTGCCAACCAAAGCTTATAATAAAAT
GTTCCCTTTCTATTCTTCAGATTTGCATGAGTTTCATCAAAGATACACAC
TTAGACGAAGAAACGCCGTGTTGGTTCGAAATTTGGCTTGTCAAAGTCAA
GGAGCATGTTAGACGTAAGTTCTAGATCCTGCTTTTCAATTTATGTATTT
ACCGCCGCTAAATGAATTTCAACAGCCTACGACTAATGGATCTGACGTTT
ATGGCTATACtctttaagccattttaatcCTGATGAAGAAATTTTGATCT
TGAAAGATTGATTAAATCCAAATTTAGTTCATCTCTTGATAttgtttctt
tatttctttatttcttgattttccaGGTTACCTTGACAACCAACAGAAAC
GAGAGAAACGAAAATCAGGACATTTAGACATGCGTATTACACAAACACAA
GAATCCGTTAAACGAATTGCAGCCATGCCTGAAATGAGGCGCGCTAAAAG
CGGTGATCATTTACGTAGACCACGAAGTAATACGGCAGGCCCGAATCCTG
CCGAAACGACGGGAAAACCGGCCCGTTCATCAAGACCGCCGTCACAAATA
ATCGGCGAAAAATCCATCGCACGTCATCGAGGGACGACATCAGCAGACAC
AACGGCGCAATGGCGTGTGGAACAAAAGATTACGCAAGAAATGTTACAAC
GTGAACGTAGTATGGACATGATTCGACGTGAGAAAAGCATGGACGTACGG
CTGGAGTCGCGACTTTTAATGGAACGCGAATATCGAAACAGTATGGGAAA
ACCTTTAGTTGAATCTCAACACGTGAACAGAGTGAGGGGTAGCGAGAAAA
GTAGCCCCGGTCAAAGTCCACCGCAATCACTGGCCCGTAGTACGGGAAGC
AGTATGGGATCACGTAAAGACAATTCGACCACAGCCAACGATTCCCCTCG
TATAGTTAACGGTCCACATACGCCCGTTTCACGTATGCCCGCCCACTCTC
AACAAAATCCTCATGAAGAATTTCGAAGGGGCGGAAGTGTGGCGGCTGCC
CGTGAAGGAATGAGTTATCGACAAGTATTTGGACTTCAATCATCAGACTA
TTTATTTAACGTGACGCCGCCTAATTACACGCGCCATCGACGTTTCTCAG
ACTCAGATACTGAATCCCTtcacaatttcaatttcatacaCAAAGTAATC
ACACAACCTTCAACGCCCACTCACCAATCCACCCAACAATTAACAAACGC
CCAACAAACGCCCTCCCAACAAACAGAAGATCCGAAGAAATCGAAAGTAC
TTCAACAACCGAAAAGttggatgaaaaaagtacgACGAAAGTCGGAAGAT
AATCCAAAACGAAAAGTTGTAGCGCAACTTTCTAACAAATAAATAGATAG
GATGagatattttgacttttagatGAACATATTATTTTTAGGAGAGGAAT
TTAAGTCTTTTTGCTTAATATTTACATTAAGattcatttttatgacgtct
AATTTTCTTAGTACTAGATATTGTATGAAATTAAGTATTCTTAGAGTGCC
TTTAAACCATTTAATCTTAACTGCTAttgaaatttagaaaacttggaaat
ttatttggaaatttttattctcaaaaattttggcTTACAAATTATCTTCA
ATGCAtctcaatattttttctttttaattttctgtAATATAGTTATTGGT
AAAAAAAcgaagttatttttttctgtttcatttttgtaaattatgtGAAG
AAACAAGCACCGTTATACAaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000084-exon-sc0000001-1491911889:1741844..1742259 | TCONS_00000084-exon-sc0000001-1491911889:1741844..1742259 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1510915933:1741844..1742259 | TCONS_00000084-exon-sc0000001-1510915933:1741844..1742259 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1575043694:1741844..1742259 | TCONS_00000084-exon-sc0000001-1575043694:1741844..1742259 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1491911889:1743361..1743855 | TCONS_00000084-exon-sc0000001-1491911889:1743361..1743855 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1510915933:1743361..1743855 | TCONS_00000084-exon-sc0000001-1510915933:1743361..1743855 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1575043694:1743361..1743855 | TCONS_00000084-exon-sc0000001-1575043694:1743361..1743855 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1491911889:1744164..1744257 | TCONS_00000084-exon-sc0000001-1491911889:1744164..1744257 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1510915933:1744164..1744257 | TCONS_00000084-exon-sc0000001-1510915933:1744164..1744257 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1575043694:1744164..1744257 | TCONS_00000084-exon-sc0000001-1575043694:1744164..1744257 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1491911889:1744470..1745865 | TCONS_00000084-exon-sc0000001-1491911889:1744470..1745865 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1510915933:1744470..1745865 | TCONS_00000084-exon-sc0000001-1510915933:1744470..1745865 | Clytia hemisphaerica | exon |
| TCONS_00000084-exon-sc0000001-1575043694:1744470..1745865 | TCONS_00000084-exon-sc0000001-1575043694:1744470..1745865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1741844..1745865 + |
Blast
The following BLAST results are available for this feature:
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