TCONS_00000066 (transcript) - C. hemisphaerica

Overview
Name
Unique NameTCONS_00000066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000066 ID=TCONS_00000066|Name=|organism=Clytia hemisphaerica|type=transcript|length=2332bp
aggagaagaaaaaaaggaagatatCTTAAATTTTGAGTATATTCAATATG
TTGCATAAATCGGATAACATTGTCAAATCGAAGAGGCAGTGAAATTGAGT
AAACAAGGGGGAGAAACAGATCCTTTTTAACCACAAGGACACAACCGAGG
GATATACGTAcatcttcttcttcaaaaaaaaacaatcaaaaagagGAAAG
AACAGAAAGAGAAAGAGGTATACGAAAGtgcaatattttttaaatagatt
ttttttaacaacTTACCAATAAAAAAAGACTACTCTTCGAATCTTCAACT
AGTTTAAGGAGAGTCGTTATTTCAACATCGGAGTTGGCAACATTCGCTAC
CTTTCCCATAAAGAGGGAAAGATACAGACAATACATATAAAAGAAGTTCA
caatatatcaaaataaaaaacAATATCGTAGACCGATCACCATCATCACC
AGGGCTCGACCGTGACCACGAAGACCGTAGATTGATTGATAGTCTTGTTC
TTAACCAACCATCTTCAACTTATCgtgaacaaaagaaaaattgttcaTAG
ACTTCAAATAAAACATGCTAGAACAACAAAACGCTCGGACGTTACTCCTA
ATCACGTCAACAGTCATCTACATGTTGTTAGGAGCGGCTGTTTTCAGTGC
TCTAGAATACGATGAACACATTCgacaaaaatcgaaatatcgGAACATCT
ATAACCTACTGCAAAAGAAATATAACATGACCATCGAAGATGTAGAAGAA
CTGGCTAATTATCTTCATAAAAGGAGGTCATTGTACCATTCCCTTGATCC
CTGGTCCTTCGCTGGATCTGTTTATTTCACAAGCGTCACTATTACAACTA
TaggtTACGGTCATTCAGTTCCACAAACCATCAGCGGACAGATCTTTTGT
ATGTTATACGCGTGTATCGGAATCCCATTGAACTTAACCATGTTTCAAGC
TATCGGGGAGCGTATGGGCGTCTTTATGTCGTACATATTACGTCGCACGA
AACGTTGTCTAGGTATGAAGAGTACAGAAGTCAACTTGGTTCATCTAGTG
GCATTTGGAGTCATGATATGGTTTGTTTTTCAATGTTTGGGTGCAGCTGT
ATTCAGTTACTACGAGACTTGGTCCTTTTTCAGGTCCTTATATTATTTCT
TTGTTACCTTGACAACCATCGGGTTTGGAGACTTGGTAGCGTTACAGgaa
atcaagaaaaaacatCCAGATAATAACGGATATTATAATCAAAACTTATA
CGTTGCTTTGACAATGATTTTGATATACATTGGATTAACAATAGCATCTT
CTGTTATAAACTTATTGGTTATGCGTTTGATGGAATTACAACAGCCGAAA
AGACGGCGTAGAAACGTGTCATGGAAAAATGgtacaaaatgtaaacattg
caaatCGAATAAAGCGACAGCATGTGTAGAAGAAGTAGCGAACAGTGTTA
TGGAGAATCATTCCGTGATGATTTTACAAAACTTTGAAGAGGAATTAGAA
TTCACGTCCTACAGACAGGTACATGAAACGGAAGATGGTGGAACACCTCC
TtattaaaatattcttttgttaCTATTCATCATTATTCCCAAAACTTGAG
CCTTACTAACAGGGGGTTTCAGGAGGTATCCGATTCCGTCATTCCGTCAT
TCCGTCAATTTTCCCTGATTTCCTTCCGTCAAACCGACAAATGAGAGCCG
TAAGTCCgcgaatttctttttaatttaagttttttgtTGACAATTCCTTT
TTTTAACTTCCACTTAAATTTCGACCAATATAATGCCAAATTCTATATTT
CAGGACAAAAATTACCCAGCTGAATTCCACAATTAGATCCAAATTTTTAG
CAAATCCGTTATTCCACTAAAAACAGTAAATTCTCCGCCAACCGTGAAAC
CCTTTAATCTCTTACCAGAGATTAATTGAGGTTTTATAAGGACTTTGTAA
GAATACAATTCTGATTTTGATATCATCTTAATTAAAACAGGAATACCTGA
TATTTGAAACATAAGTTGTGTGGCTGTAGTTTATCAAGAGATAAATATCA
GATAAAAAAGTGGAAAGGTCTAATGTCTGAAAATTGCACTATTTTTGCAA
AAGAACCTTAGAGTAGCAGCAAAATGAGTTCCGGCAAAAGCTTTTTTTTC
CGGCttgttttttacaaattttctgatATTAAAGTACCTCAAAATTACCT
TTTTCTTGGTACCATGACCCAGATCAAAGAAAGTTtgatattttgtattt
tgagcTTGGTTTTCTTTTCATCTTGTCTGTgtttagagaaaaaatttatt
atgattgaaaaaagaaatatcaaaatatttac
Run BLAST on NCBI

protein sequence of TCONS_00000066-protein

>TCONS_00000066-protein ID=TCONS_00000066-protein|Name=TCONS_00000066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MLEQQNARTLLLITSTVIYMLLGAAVFSALEYDEHIRQKSKYRNIYNLLQ
KKYNMTIEDVEELANYLHKRRSLYHSLDPWSFAGSVYFTSVTITTIGYGH
SVPQTISGQIFCMLYACIGIPLNLTMFQAIGERMGVFMSYILRRTKRCLG
MKSTEVNLVHLVAFGVMIWFVFQCLGAAVFSYYETWSFFRSLYYFFVTLT
TIGFGDLVALQEIKKKHPDNNGYYNQNLYVALTMILIYIGLTIASSVINL
LVMRLMELQQPKRRRRNVSWKNGTKCKHCKSNKATACVEEVANSVMENHS
VMILQNFEEELEFTSYRQVHETEDGGTPPY
Run BLAST on NCBI

transcript from alignment at sc0000001:1488001..1493698+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000066 ID=TCONS_00000066|Name=TCONS_00000066|organism=Clytia hemisphaerica|type=transcript|length=5698bp|location=Sequence derived from alignment at sc0000001:1488001..1493698+ (Clytia hemisphaerica)
aggagaagaaaaaaaggaagatatCTTAAATTTTGAGTATATTCAATATG TTGCATAAATCGGATAACATTGTCAAATCGAAGAGGCAGTGAAATTGAGT AAACAAGGGGGAGAAACAGATCCTTTTTAACCACAAGGACACAACCGAGG GATATACGTAcatcttcttcttcaaaaaaaaacaatcaaaaagagGAAAG AACAGAAAGAGAAAGAGGTATACGAAAGtgcaatattttttaaatagatt ttttttaacaacTTACCAATAAAAAAAGACTACTCTTCGAATCTTCAACT AGTTTAAGGAGAGTCGTTATTTCAACATCGGAGTTGGCAACATTCGCTAC CTTTCCCATAAAGAGGGAAAGATACAGACAATACATATAAAAGAAGTTCA caatatatcaaaataaaaaagtaagaataattTTTGTGGCTTCAAAGGAA ACATTGAACGTAAACGCACAAAGATTATTTTTGGTTTTGGTgtaaaaatt tattcttttttggaccaaatatttttttgcgtgtGCTAAGAGTTTTATTG GATTATTTTAACACACTGATTCAACATTTCAAACGCCATTGAACTTGGTA CATTGGTATAAATAAATTCACAGCACTtcaattttctattttgaagcAAT ATCGTAGACCGATCACCATCATCACCAGGGCTCGACCGTGACCACGAAGA CCGTAGATTGATTGATAGTCTTGTTCTTAACCAACCATCTTCAACTTATC gtgaacaaaagaaaaattgttcaTAGACTTCAAATAAAACATGCTAGAAC AACAAAACGCTCGGACGTTACTCCTAATCACGTCAACAGTCATCTACATG TTGTTAGGAGCGGCTGTTTTCAGTGCTCTAGAATACGATGAACACATTCg acaaaaatcgaaatatcgGAACATCTATAACCTACTGCAAAAGAAATATA ACATGACCATCGAAGATGTAGAAGAACTGGCTAATTATCTTCATAAAAGG AGGTCATTGTACCATTCCCTTGATCCCTGGTCCTTCGCTGGATCTGTTTA TTTCACAAGCGTCACTATTACAACTATaggtaagaacatttttttacacc tgtttatgatattcatgacgtaatgttttatacggaagcacccaaaaaag aacGGGTGTTTGTNACACCTGTTTATGATATTcacgacgtaatgttttat acggaagcacccaaaaaagtaCGGGTGTTTGTCACTAATGGAACGGGCTG GAACGGCATCGCGCGgaaaaagtgagcgtaggagttaggtaagcatGGGA AGAATTTGTTGGCGACAAGGGCTGAAAAGTTAatgttaatcagcagcctc tcactaACTTTTGTCCGTTCTCCTACGCAGTTCCTATTCTAGGAAACgtc cgccgcctttatgtttccgccctctgacatgattaattaacagactagtt tgctagtctaaatTAACACAATAAAATAGTAGCAAACGCCCTGGCATAAT ATGAATATTATGAAAAACAGATTATTTCGAGGAGACATTCCCAGGGCATT CTCTTTTTACCGCTTATCTGTTTCAAATGAACCACTGCCAAGATCTAATC TACTTCGAAACGATCCTCCCGTACAAGGTTCTCTCGGGAGAAAAGAATAC CccaatcaaataaataaatcctctcACTGTAAGATATAATGCTCTTTTCC CATCCCATAATTTTctaacaatagaattcaaaccccaagtcataaaaaac ctgggaatatcaatccccatcgagttgcAGTTCATTATTTCTACCCCCac tgtttgaaaaaatactacctGGTCTTAGGAAGGGACTTATTTAAAAACAG CTGAAGTCTGTCAGAATCTTTACGATCCGTGTAAGCAGGACTCCGAATCA TTGGTGTAATATACTTGAAAAGCGTCATCCACGCAGTCCTATGAATATAT ACTGCGATGTCAGACAGCGATTCTTAACAGCACACATTCAAAGTATTTga gacatgcgcgataaaattatTATCGCCCGTCCTCAAAGGTTGAATTTCAG AGAAAGCTAAACTATGATGTACACTCGATTTATTATAATGTAAGAGCAGC TATGgagacattttttaaacttcaatTAATACCTTTAGGAGTCGGCAGCT CCGTGCCAGAAATCCCGGTCTGCATAATCATGATATGCACCTTTGCAATT TCTTCCACGgccccaacagctgattggttgaaagtgacatattaactgat tttacgtcacttacaaccaatcagatattgggtccgtgatgtaatgtcaa aaGACATTGTTATGGTGCATATCATTAATcagacaaaaaataatttcaaa ctttgacACCTTGTATGTTTTCCTGTGATGTGACGTATGAACGAAAAGCT TTTAACTTGATAGCAAGGGGAACTAAAAGCCGATTAGCAATCAGATAAAA GATCATACCTCTGTCTGACGTCAATGGTCTCATCGCGCAGCCTTCTGTTT ACAGTTCCATGTTACTGAAAGAGAGAAATATTACTCATACAATAGATCTT GAGCTGAAGTGAGTAGAGAGTAGAGAAAAAGAGTAGGGTAGATTAGCATT GcagtagactagcaaactagtctgttaaatAATAATTTCAGAGAGGGTGG GAACAAAAAGGCGGCGGGCgattgctagaataggagctgtgTAAGAGAac aagcaaaagttggtgagagatTGCTGATTAACATTAACCTTTTAGccccc ttgccgccgacaaaatttcttcctaggCTTCTAAATGCAggacaaaatct tttaaaaacacTTCAAAGTGCTTCTCTTAAACCACTAGCAAGGAAAAATT AGTCAGTTTTTTTACTACACTTTCAACATTTtctaagccttcggatgttc ttaactattttgagtttcaagcctgaaaatgttctaaaTTTCCTTAGAAA TCGGATGTATTTGAGTCCGCAaggtcttaaaatgttcttaacttgttttt accttgttagccatcgaagccttatgttcttagaTGGCCGGAGGGAGCAC TGACCTTGGCGGTCGACGGGGACGTTCCCGCTgaggaccctgtcagatat aaatgtttggtaaatttagaACCCTATCAGAATGAAAAATTTTCCTGCGA AAACTGAACAAAAGTAGACCAAGTTCCTTGAGCagacaaaaatttaaatt tcttatcAATTCCTACTCTataaattgtcaaaaataacCAAACGTCGACC TTGTCAGATAAACATTTTCATAGTTAGAAAATTTGGGACCCTaccagata tcttcagagcctaaaaaagggatcCTTCCCAGCGGCACACCCTTTACCcg attttgcctaagtaaccccccACCCCGGGCTTATGTAGTTTGCTCTTAAA AAGTAACGTGCAACACAAAAgctaaaaatgaccaaaaataggCAAAATGG ACCCACTTTAGAAGGTGTAACTTTTGATcaaacaaaaatctaaaaatcta aaaacgcAGTGTAAAAGTGAgtgtaggagttaggtaagcgtagtaAGAAa atttgtcggcggcaagggctgaaagcccTTAATGGTTAATATGTTAatgt taatcagcagcctctcgcCAACTTTTGATCGCTCTCCTgagcagctccta ttctagcaaacgcccgccgcctttatgttcccgccctctgacatgattaa ttaacagactagtttgctagtctataccatcaggaaagttttaagtttcA GAAGAGTTTCtgatagaaaaaatcttttttttcatcttcattttcaaaat ctttagaTTCTGAAACGTTGAAATCATCCACttcatactatcttttcaac gaggaaCTACTTTTAATCATTTCTCCTTCAAGAGCAATCTATCAAAATTT GCGGACTGTCAATTCTCATAGAACAGATTTCATATGACATTTTGGGAGAA TTCACGAtgaaaaagcttaaaacttTCGATAAAATGCAGTTTTGTAGTAA CCTTAAATTTTGCTTAAACGTCACAgagaaatttcttcattttttcctac acgtttttttcttattagaacaaattatataagaacatatggcttcgatg gctaaaatattaagaacattttaaggcttataactcaaaaagctaagaac atccgaaggcaaATATGTAACATAAATCAtcaccaaaaaaacaaacaaat ctcttcaatttcatttcaggtTACGGTCATTCAGTTCCACAAACCATCAG CGGACAGATCTTTTGTATGTTATACGCGTGTATCGGAATCCCATTGAACT TAACCATGTTTCAAGCTATCGGGGAGCGTATGGGCGTCTTTATGTCGTAC ATATTACGTCGCACGAAACGTTGTCTAGGTATGAAGAGTACAGAAGTCAA CTTGGTTCATCTAGTGGCATTTGGAGTCATGATATGGTTTGTTTTTCAAT GTTTGGGTGCAGCTGTATTCAGTTACTACGAGACTTGGTCCTTTTTCAGG TCCTTATATTATTTCTTTGTTACCTTGACAACCATCGGGTTTGGAGACTT GGTAGCGTTACAGgaaatcaagaaaaaacatCCAGATAATAACGGATATT ATAATCAAAACTTATACGTTGCTTTGACAATGATTTTGATATACATTGGA TTAACAATAGCATCTTCTGTTATAAACTTATTGGTTATGCGTTTGATGGA ATTACAACAGCCGAAAAGACGGCGTAGAAACGTGTCATGGAAAAATGgta caaaatgtaaacattgcaaatCGAATAAAGCGACAGCATGTGTAGAAGAA GTAGCGAACAGTGTTATGGAGAATCATTCCGTGATGATTTTACAAAACTT TGAAGAGGAATTAGAATTCACGTCCTACAGACAGGTACATGAAACGGAAG ATGGTGGAACACCTCCTtattaaaatattcttttgttaCTATTCATCATT ATTCCCAAAACTTGAGCCTTACTAACAGGGGGTTTCAGGAGGTATCCGAT TCCGTCATTCCGTCATTCCGTCAATTTTCCCTGATTTCCTTCCGTCAAAC CGACAAATGAGAGCCGTAAGTCCgcgaatttctttttaatttaagttttt tgtTGACAATTCCTTTTTTTAACTTCCACTTAAATTTCGACCAATATAAT GCCAAATTCTATATTTCAGGACAAAAATTACCCAGCTGAATTCCACAATT AGATCCAAATTTTTAGCAAATCCGTTATTCCACTAAAAACAGTAAATTCT CCGCCAACCGTGAAACCCTTTAATCTCTTACCAGAGATTAATTGAGGTTT TATAAGGACTTTGTAAGAATACAATTCTGATTTTGATATCATCTTAATTA AAACAGGAATACCTGATATTTGAAACATAAGTTGTGTGGCTGTAGTTTAT CAAGAGATAAATATCAGATAAAAAAGTGGAAAGGTCTAATGTCTGAAAAT TGCACTATTTTTGCAAAAGAACCTTAGAGTAGCAGCAAAATGAGTTCCGG CAAAAGCTTTTTTTTCCGGCttgttttttacaaattttctgatATTAAAG TACCTCAAAATTACCTTTTTCTTGGTACCATGACCCAGATCAAAGAAAGT TtgatattttgtattttgagcTTGGTTTTCTTTTCATCTTGTCTGTgttt agagaaaaaatttattatgattgaaaaaagaaatatcaaaatatttac

Coding sequence (CDS) from alignment at sc0000001:1488001..1493698+

>TCONS_00000066 ID=TCONS_00000066|Name=|organism=Clytia hemisphaerica|type=CDS|length=1986bp|location=Sequence derived from alignment at sc0000001:1488001..1493698+ (Clytia hemisphaerica)
ATGCTAGAACAACAAAACGCTCGGACGTTACTCCTAATCACGTCAACAGT
CATCTACATGTTGTTAGGAGCGGCTGTTTTCAGTGCTCTAGAATACGATG
AACACATTCgacaaaaatcgaaatatcgGAACATCTATAACCTACTGCAA
AAGAAATATAACATGACCATCGAAGATGTAGAAGAACTGGCTAATTATCT
TCATAAAAGGAGGTCATTGTACCATTCCCTTGATCCCTGGTCCTTCGCTG
GATCTGTTTATTTCACAAGCGTCACTATTACAACTATaggtTACGGTCAT
TCAGTTCCACAAACCATCAGCGGACAGATCTTTTGTATGTTATACGCGTG
TATCGGAATCCCATTGAACTTAACCATGTTTCAAGCTATCGGGGAGCGTA
TGGGCGTCTTTATGTCGTACATATTACGTCGCACGAAACGTTGTCTAGGT
ATGAAGAGTACAGAAGTCAACTTGGTTCATCTAGTGGCATTTGGAGTCAT
GATATGGTTTGTTTTTCAATGTTTGGGTGCAGCTGTATTCAGTTACTACG
AGACTTGGTCCTTTTTCAGGTCCTTATATTATTTCTTTGTTACCTTGACA
ACCATCGGGTTTGGAGACTTGGTAGCGTTACAGgaaatcaagaaaaaaca
tCCAGATAATAACGGATATTATAATCAAAACTTATACGTTGCTTTGACAA
TGATTTTGATATACATTGGATTAACAATAGCATCTTCTGTTATAAACTTA
TTGGTTATGCGTTTGATGGAATTACAACAGCCGAAAAGACGGCGTAGAAA
CGTGTCATGGAAAAATGgtacaaaatgtaaacattgcaaatCGAATAAAG
CGACAGCATGTGTAGAAGAAGTAGCGAACAGTGTTATGGAGAATCATTCC
GTGATGATTTTACAAAACTTTGAAGAGGAATTAGAATTCACGTCCTACAG
ACAGGTACATGAAACGGAAGATGGTGGAACACCTCCTtattaaATGCTAG
AACAACAAAACGCTCGGACGTTACTCCTAATCACGTCAACAGTCATCTAC
ATGTTGTTAGGAGCGGCTGTTTTCAGTGCTCTAGAATACGATGAACACAT
TCgacaaaaatcgaaatatcgGAACATCTATAACCTACTGCAAAAGAAAT
ATAACATGACCATCGAAGATGTAGAAGAACTGGCTAATTATCTTCATAAA
AGGAGGTCATTGTACCATTCCCTTGATCCCTGGTCCTTCGCTGGATCTGT
TTATTTCACAAGCGTCACTATTACAACTATaggtTACGGTCATTCAGTTC
CACAAACCATCAGCGGACAGATCTTTTGTATGTTATACGCGTGTATCGGA
ATCCCATTGAACTTAACCATGTTTCAAGCTATCGGGGAGCGTATGGGCGT
CTTTATGTCGTACATATTACGTCGCACGAAACGTTGTCTAGGTATGAAGA
GTACAGAAGTCAACTTGGTTCATCTAGTGGCATTTGGAGTCATGATATGG
TTTGTTTTTCAATGTTTGGGTGCAGCTGTATTCAGTTACTACGAGACTTG
GTCCTTTTTCAGGTCCTTATATTATTTCTTTGTTACCTTGACAACCATCG
GGTTTGGAGACTTGGTAGCGTTACAGgaaatcaagaaaaaacatCCAGAT
AATAACGGATATTATAATCAAAACTTATACGTTGCTTTGACAATGATTTT
GATATACATTGGATTAACAATAGCATCTTCTGTTATAAACTTATTGGTTA
TGCGTTTGATGGAATTACAACAGCCGAAAAGACGGCGTAGAAACGTGTCA
TGGAAAAATGgtacaaaatgtaaacattgcaaatCGAATAAAGCGACAGC
ATGTGTAGAAGAAGTAGCGAACAGTGTTATGGAGAATCATTCCGTGATGA
TTTTACAAAACTTTGAAGAGGAATTAGAATTCACGTCCTACAGACAGGTA
CATGAAACGGAAGATGGTGGAACACCTCCTtattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000033XLOC_000033Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000066-proteinTCONS_00000066-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000066-exon-sc0000001-1491911889:1488001..1488420TCONS_00000066-exon-sc0000001-1491911889:1488001..1488420Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1510915933:1488001..1488420TCONS_00000066-exon-sc0000001-1510915933:1488001..1488420Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1575043694:1488001..1488420TCONS_00000066-exon-sc0000001-1575043694:1488001..1488420Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1491911889:1488647..1489079TCONS_00000066-exon-sc0000001-1491911889:1488647..1489079Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1510915933:1488647..1489079TCONS_00000066-exon-sc0000001-1510915933:1488647..1489079Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1575043694:1488647..1489079TCONS_00000066-exon-sc0000001-1575043694:1488647..1489079Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1491911889:1492220..1493698TCONS_00000066-exon-sc0000001-1491911889:1492220..1493698Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1510915933:1492220..1493698TCONS_00000066-exon-sc0000001-1510915933:1492220..1493698Clytia hemisphaericaexon
TCONS_00000066-exon-sc0000001-1575043694:1492220..1493698TCONS_00000066-exon-sc0000001-1575043694:1492220..1493698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1488001..1493698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0225359 0 4.66146 1.23157 0.734551 0 0 0.438945 1.01902 0.624022 0.252764 0 0 1.09725 0 0.326685 0.0720502 0.435614 0 0.431656 0.380573 1.10784 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0030922pore_dom_K_chnl_TASK
IPR0032802pore_dom_K_chnl
IPR013099K_chnl_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071805 potassium ion transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005267 potassium channel activity
Blast
BLAST of TCONS_00000066 vs. Swiss-Prot (Human)
Match: KCNK9 (Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 3.752e-67
Identity = 115/264 (43.56%), Postives = 163/264 (61.74%), Query Frame = 1
Query:  568 LEQQNARTLLLITSTVIYMLLGAAVFSALEYDEHIRQKSKYRNIYNLLQKKYNMTIEDVEELANYLHKRRSLYHSLDPWSFAGSVYFTSVTITTIGYGHSVPQTISGQIFCMLYACIGIPLNLTMFQAIGERMGVFMSYILRRTKRCLGMKSTEVNLVHLVAFGVMIWFVFQCLGAAVFSYYETWSFFRSLYYFFVTLTTIGFGDLVALQEIKKKHPDNNGYYNQNLYVALTMILIYIGLTIASSVINLLVMRLMELQQPKRRR 1359
            +++QN RTL LI  T  Y+L+GAAVF ALE D  +R++ K +     ++ KYN++ ED  +L   + +       +  W FAGS YF    ITTIGYGH+ P T +G+ FCM YA +GIPL L MFQ++GERM  F+ Y+L+R K+C GM++T+V++ ++V  G        C+GAA FS  E WSFF + YY F+TLTTIGFGD VALQ              + LYVA + + I +GLT+  + +NL+V+R + +     RR
Sbjct:    1 MKRQNVRTLSLIVCTFTYLLVGAAVFDALESDHEMREEEKLKAEEIRIKGKYNISSEDYRQLELVILQSEPHRAGVQ-WKFAGSFYFAITVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCGMRNTDVSMENMVTVGFFSCMGTLCIGAAAFSQCEEWSFFHAYYYCFITLTTIGFGDYVALQ-------TKGALQKKPLYVAFSFMYILVGLTVIGAFLNLVVLRFLTMNSEDERR 256          
The following BLAST results are available for this feature:
BLAST of TCONS_00000066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNK93.752e-6743.56Potassium channel subfamily K member 9 OS=Homo sap... [more]
back to top
Spatial Expression
in the tripal_feature_cv_term.tpl.php