|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000059 ID=TCONS_00000059|Name=TCONS_00000059|organism=Clytia hemisphaerica|type=transcript|length=2821bpRun BLAST on NCBI transcript from alignment at sc0000001:1388762..1407914+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000059 ID=TCONS_00000059|Name=TCONS_00000059|organism=Clytia hemisphaerica|type=transcript|length=19153bp|location=Sequence derived from alignment at sc0000001:1388762..1407914+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000059 vs. Swiss-Prot (Human)
Match: SC5AC (Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2) HSP 1 Score: 198.749 bits (504), Expect = 4.587e-68 Identity = 143/386 (37.05%), Postives = 213/386 (55.18%), Query Frame = 1
Query: 1177 LYVSITVTGLVCIFYTTIGGIKAVVWTDCFQAFVMIAXXXXXXXXXXXXXXXXXKIFEKAQQGERIHILNFDPDPRIRNTFWSLIFGVGFTILPAWAVGQQSVQRFQAAKSMKEARLALLWNFPSMLFISLLAMLAGLVIYAVNADCDVGVYGLHLVDRNDQVLPYFIMQKLGHLTGIPGLFMXXXXXXXXXXXXXXINGLSALLLEDFIRKIRPNITDTNAKKMSMLLAFSSGLCGIGLSFLISNLGNLVSQISFTVIGTLGSPYLGMFTLGMMNPWSNTKGAYXXXXXXXXXXXWLAIGAIFNPPNA---YPKVVHVDGCAGFNSTNVTNTILHGSGIIRPTDQYVPXXXXXXXXXXXXYLWYGLIGLTVTILFGSVASAIFKR 2325
L+ S+ TG+VC FY T+GG+KAVVWTD FQ VMI G L V+I G G + E++ G R+HI +FD DP R+TFW++ G FT L + V Q ++QR + K+ K A+LAL +N + I + A+ +GL++Y+ DCD G ++ DQ++PYF+M+ + G+PGLF+A FS LSTV+SSIN L+ + EDF++ P+++D + +S L G+ ++ S +G +V Q S ++ G G P LG+F+LG++ P+ N KGA G L G+ + W+AIGA P A +P + D C N T +L I T + SYL+Y +G I+ G + S I R
Sbjct: 158 LWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSG--IISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTLSTVASSINALATVTFEDFVKSCFPHLSDKLSTWISKGLCLLFGVMCTSMAVAASVMGGVV-QASLSIHGMCGGPMLGLFSLGIVFPFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQCIKSNVTATGPPVLSSRPGIADTWYSI------------SYLYYSAVGCLGCIVAGVIISLITGR 528 HSP 2 Score: 80.1073 bits (196), Expect = 4.587e-68 Identity = 50/154 (32.47%), Postives = 79/154 (51.30%), Query Frame = 2
Query: 686 SIVDYLVFAIVLVASSVIGIYFARKGKPASSPSSKEKNERLNILSKQGTKDTNENGDNQKETDEYLVGGRNMHWFPLSISFMATYISASSLLGIPAEIYTYGFQYIVSCGALFVSTFFTWYIFIPIFYRLKIVCANEYLELRFSRGVRNIGCII 1147
++ DY+VFA + SS IG++FA K ER + + E+LVGGR M + P+ +S A+++SA ++LG P+E+Y +G ++V A T +F+P+FYR I EYL+LRF++ VR +I
Sbjct: 7 AVWDYVVFAALFFISSGIGVFFAIK-------------ER-----------------KKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVI 130 The following BLAST results are available for this feature:
BLAST of TCONS_00000059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.