TCONS_00000054 (transcript) - C. hemisphaerica

Overview
Name
Unique NameTCONS_00000054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000054 ID=TCONS_00000054|Name=|organism=Clytia hemisphaerica|type=transcript|length=2210bp
CACTGACAGGTTCAATTGGGAATGAATGTAAACTAACCTCGTTTCGTTAA
CCTACGAAGTGATGTAAAGGCTCTAGACGAACATTCATAATACATGAAGT
GTAGACATCTGGTACATGCTAAATATTATTTGACAATGATGCTGTATCTA
ACATTCAACCTACACGCTATCACGGTTTTACAGTTAATACTAACATTTAC
TCACACGTTTGCATCAAACCAAACATATATGTGGCAATCGACAAACATCA
CCAGACAACAAACACATGTACAGTATATGCGATTCAAGAAATTAACTCGT
GGATATAAGGTATGGGCTACACTCGGTAGACATATCGATTGTAATTTCAG
TGGCTCCTCTAAAATGGAATGTGCTGATACTTGTATGAGAAAACCAATGT
GTGTTACCTGGACATGGCGAGAACATTATGGGTTATGTCGCTGTTCTGCC
GAAGTATACCGTGTCTCTCCTACTTACATTTTACAGGATAACCAATTTGA
TGCTTATGAAATTTGGAATCCCTGTATGCAGAATGCATTGTTATGTGAAC
ATGGAAGTATTTGCTCACCGAACCGCTTGACTAAAACATATCAATGTCTC
CATTGTTTCCCTCCATACACTGGCAAACATTGCAATGAAACTGgtCCATC
GATACCCTCGACGATTTCGCAAGACATTTTACTTGGTAAAAACGCTTCCT
GTATTGCTTTGAAAGAACATTTCAATATACCAAACGGTTTGCAACAATAC
ACAATACATCCATGGAGAGACCAACGAAAAATTCATATAAAATGTTCAGg
AAAAGTTATGAGATTTACCCGACTAGACACAAGAGACCAAGCTCCAGTGA
AGGAACTAAAAGCTGCGTCAATGGAAGATGGTCTTGTGCTTGAGAATAAT
TATCGTGCGCATGCGTCCTTTCTACGCATGGCTAAAATACTAATGAACTT
TGAAACCATACGCATGAAATGTGTTCGAAACACAACAGAATTAGTTTCAC
TGGGCAACAAAAGACAAGCTTCTGATGCCGATTTCAATGTTATACGATAT
TTCTCAGGAGAAAGTGATAGCCGACCTGTGGAGACGACAAGTATTTGGAG
ATCCAGGCTGAATGGGGTGTGGGATGATTACCCAATTGATGCAGTCGACG
ACCTGTTATCTGCTGACAATGTTGAAAAAGAATATCGACCTTTCAAAGAT
ATTTATATAGGTAATGATGGTTTAAAAATGACATTCACAAATGAATCACA
ACAATGCTTTGGTCCTGAAGGCGATTTTAACCATTATTTACTCGAAGTTT
ATTGATGAGAAATGGAAAcatatttctgacaaaaaaatGACCTTTCAAAG
ATATTTATATAGGTAATGATGGTTTAAAAATGACAGTATNCGACAGAATA
ATGACCTTTCAAAGATATTTATATAGGTAATGATGatttaaaaatgacat
tcaCCAATGAATCGCAACAATGTTTTGGTCCTGAAGGCGATTTTAACCAT
TATTTACTCGAAGTTTATTGATGAGAAATGGAAACATATTTCTGAAAGAA
TATCGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAATGAC
AGTATGATACTGGTCCGAACTTCCTATATCTGTAACCGAAAAATGAATCG
ATTTTAGACACCGAAGTTTTTGCTTTCGTTTAGGTACTCGGTATCGTACT
TTTGTGAGGGAGATTAataccaatgaagtataagcccgaagggctagaag
agAATCTTTGACCtgtctcaggcaagaaaaagtgaagccttaaaatgggc
gctgcatttttgacgacgggTTGAATGTAGCAGTCCTTTTGTTTTctagt
gatattttttttcgaaatttagtggtaaattttagtttcaatcagccacg
tgtgtaaaaaccaggtggCTGGCGcaattttggtaggatttgttggcttc
aaatcctaccaaggagattcacTTCTATTTCATTCAATTCATTGGTTAAT
AATTTGGGCCATTAATGGATCTTTTTCGGAGGGGGGGTTATTATTTTTAG
CTGATCACTGAAATTATTCttcaatttaattatgttttcTAAGACTGTAC
ATTTTTGTTCTTacatttacaatttttcatctttggAAGAAACTGAGCAT
AATTTTAGCCAAAACAACTAAGTAACTATTTTTCCAATTGAATTAAACTT
CAATTAATTA
Run BLAST on NCBI

transcript from alignment at sc0000001:1155583..1170895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000054 ID=TCONS_00000054|Name=TCONS_00000054|organism=Clytia hemisphaerica|type=transcript|length=15313bp|location=Sequence derived from alignment at sc0000001:1155583..1170895+ (Clytia hemisphaerica)
CACTGACAGGTTCAATTGGGAATGAATGTAAACTAACCTCGTTTCGTTAA CGTACGTTTTTAGCGTGTTTTTAATTCGTGAATTAAATAATGGTTTTCTG CTCGTCAAATATATTCATGaatgaaatattatttaaatgttttgttttta cataagtgttcccgtttcatatcagacacatatttcatatcgggacagCG TCTTCCTTCCTTTTGTTATGTTATGCTggtataagcaaaaaatatttttt tcctctttcagACCAATCTTGCTCCTCATTTGTGTCAATCCAATTCGAAA AAGCTTAGTTAAAATTGATCAGTAAGCAAACGGTATCACTCTAAACAAGa cctttaaagtaaaaaaataagaaagagTTGAAAGCGAAGattcaaaatga agaagacaaTTACAATTAGTGAAGTTCAAATCatagtttatttttttgtt tcttcttcatcattcatctttgtttttcagGTCTTTGATATTAACACTCC ACTCACAAATTTCCTTTCAACCAATTCATTCtcatttgaattctttttga tatcatttaaaaaaaaacaataaatgaACGTCAAACGTcatcactttgaa aaaaattctcaaaaataatgacgtctaaaaacgctgttttctgctgtttt ttggggtcaatcacttgttagctttgtatcataactttatattgagtaaa tattttagtgaaatttcttcacagtgacgACCTCTtaaatcaaagaatct ctccagtgaaaatgaaagttatggcgcttctctaaaagatcttcattttt ttcttcttcattttcatcttcgttttcagaatttttttaaaaactttttt atttcaaattgttccactcacaaatatctctccaacgataccaaatttat aaagattgaagaattccttcaaaagttataggtaaaagaaaaaagagtgc acacttatcgtgaatagactttaattacTTCCAAACTattcaattctttt gaaatttgaatattgcatctaagtgcacCTAGCTCCTTTTTCCATATCTT TCATTCAAATCACTTTGTAGTGAGTACATAGATGGCGTTTAAGTGCGCTA AACGCACTTAGGCGCAATTTTTTACATaagtgagtaccaagcttaaGGGA GCTCTTGATGTTTCTTTTTGTTATGTAccctttttatttgtttttgaaat tttattattcTAAACTTAACTTCTAAACTTAGCGGGCTAAtcttttttcg ttttctttactttactttactttactttaAAAGCTACGAAGTGATGTAAA GGCTCTAGACGAACATTCATAATACATGAAGTGTAGACATCTGGTACATG CTAAATATTATTTGACAATGATGCTGTATCTAACATTCAACCTACACGCT ATCACGGTTTTACAGTTAATACTAACATTTACTCACACGTTTGCATCAAA CCAAACATATATGTGGCAATCGACAAACATCACCAGACAACAAACACATG TACAGTATATGCGATTCAAGAAATTAACTCGTGGATATAAGGTATGGGCT ACACTCGGTAGACATATCGATTGTAATTTCAGTGGCTCCTCTAAAATGGA ATGTGCTGATACTTGTATGAGAAAACCAATGTGTGTTACCTGGACATGGC GAGAACATTATGGGTTATGTCGCTGTTCTGCCGAAGTATACCGTGTCTCT CCTACTTACATTTTACAGGATAACCAATTTGATGCTTATGAAATTTGGGT AAGTTTATATTTATAATCTTTAAAGCAAATAATATATGCATTTAGAGGGT TTTATGACTTCGGGCTAACTCCAGTAATGTCTCCCACCACACTACTCCTC CTCGCTGATTTTTGTTTTCGATTTCTGACCATGGAGACTTTCATTGATGT TTCTGAGTGACTTTAGTGATTTTgaacgaattttgaaattttcaacaatt tGGACCCAGAAGGGGTTTGAACCTGCAAACAGAAAGTTTCCTTGTGCAGT AGTCCGATGCTCTACCGTTCGACTACAAGACCACTGTAGATAACGATAGT ATAGTTTACTGATCCAATATATGGCAATAGTTCAAACCCTACCAGAGAAC TTAAAATGCCTCAAAAGTGTACTCTCGGGAGCTCTAACCCTGATCCTAAC TCATCAATAACCAACCCTAAACTTAActaaaagaaatgaaataattttgg gAGACATAATAGGATTTAGTCATGAATAAATTACTTTgggattgtaaaat ttggcacATGATACCCTAGATAAGGTCGTTTGTGAAATTCTGTCAATCAA GCGACCAAGTTTGCCCAGAACAAAGATGTAAATATAAGGTAGACCAGGTC GATCTGGGGGGTCTGCGTCCCCCAAGaggtgaaaaatatttgatggtgGT TTTGGGTTGCTAAGATGCTATATTTTCAGGAATGAGTCGGTAAATAGGCT GTTAAGGGGGCTAACTAAAATGGTAAGCTAGGTAAGTGGGGGTGTTTTTA GCCAAAATACCAATTTGTAAGGGATTTTGCTTGACACTTGAAACACCATG GTAACTTAGAAGTGCGATTCTGCACTATCTAAAAATCGTTATTGCTTGAA ACTTTCCAAATATGTCACAAAtaggtaaaataaaattttgaaaaaagaaa aattcaaaaatatttaccaGGGGGTTCTGTACCAAAGAAAACAGGGGGTA AAACACGAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAAATA TGTTACAAAtaggtaaaataaaattttgaaaaaagaaaaattcaaaaata tttaccaGGGGGTTCTGTACCAAAGAAAACAGGgggtaaaaaacgaaaaa aacccCCAAAATCGTATTTTTTCAGTAGAAAAGTGGTCATAGGCAAACGA AAAACTGTTTATGATACTTCAAAGGTTATGTGGTGATAGATCGTGATTGC TCTCATCATAATATCAGGATTAACTATCCACTGGGGGCTTAATTCTttat tttcagggggtaaaacttgcaaaaatactcattttttgaccaaaattcaa atttttgagcTAATGTCTCGCGATTAACCCCTCAAACAGTCTACAACTAT GAAAATTCCCAATAAAAAGCCTTTAAACTAATAAATTTATCTGTTTCTAG GttagaaagtttcaaaatatctcaaaatcgGGGGTAAAATGtcttaaaat attaaatttttacaaaatatcacaattttttaaaaattaaaatcaatttt tggacaaaaaaacaaaatcataagTCATAAccagttttcttgattttagg GCGAAAATTGCAAAAACACCTTCTTTTCGACAAAAACTGGTAGTCCATAA GACTTTCAAATCGGCTAAAAGTAACAGCTTTCTATGAAAAATATACTGAG ACAACGTAATAAAAAAGTTTATCATAATATCAATAGCTTTAGAATTATCC ATAATAAACCAATCATAGCGATGTCAAATTAAACAACAACAAATCTTACA CCTTCATATTATTTAGTTCTCGTCGTCATCCTCAGCTGATCTCTTCATCT TCGTCTTCATCCGATTCGTCGTCGGAAATTTCATCTTCTCCAACTTCAGC TTCTTCGCTGTTGTAGGTCGCATCACAAAGTATCTCCTCAACTTTAAGGG GAAAGATTACCTCGTCAACCCAAATTGTAGATCCGTCGTTCGACCAACCA CTTTCTGTAATATCTCCTTGTTAACCAACTTATTAATGATGATTTCCAAA GTTTGCTAACGTAGTTTGCCTTCTTCGAGTGGAGAATCAAAATTGACTGA GACGGAGGAAGCATGGCCATATCGataatttttctgcttttggtgtactt cttttcaaacatttttgctCTCGCTACGTTGACTGATGTTTCTTTAGGAT AACCATAAAGGGCGCAGACGAATCGTTCCAAATAATTTTGAGTTTCTTCT TCCAAATTCCATGATTCTCCCAAGCGGCGAAAAGCTTCCACGAAATTTct attcttcttcattttattGAAGCAGGTTGATTTTCCTTCTTTGAAGAATA ATGATTATATGTAATCGTTTCCTGTAAAGGCGTGGAAACCACTCAAAGAT GTTTTGTACTTGACAGCATCTTTGCCAAGGTTGCCTGTCCAAAACCCTTT CCGTGTCTTCCCTTTGCCGTAGTCAAGATAGATTTTGGTTGGACTTAGAA GACATGCTGCAAGAACAAAGATGTCAGTGTCTGCAGATGGAGATCTTAAG ATTACTTTCGCTTCGGGATTTTCTTTCAGGACATGACTGCAGTGAGGGGT GACCTTTGAGTCAGCTTCCTCTTGATCAGATGACAAATTCTCTGAAATAG TGACACCCGTTCGACTAAGACAATACGTAACACCTTCTTGAGAAAAATAG ACCTTCGAACAATTTGTGGTCTGCAATACTCTCTGATAATTACTTCTCAT TACTTCTGACATCAGCTCAaccaattttgttttgttttcaacattCCTCA TGAAGTCTCCGAAGTCATAGGGAAATATCGATTCCTTGGATGCGATCATA ACTTTTTGATCTTTACCACGCTCATTACGTTCATCACCTTTGATCGAATT GGATCTGTATGTGTCAGCAACAATATCAATACGGTTGTACCATTTTGGCA GGTCTCCAATGAATTTCGTCATAGTCCAAATAGCAGCAATCAGGTCAATG ACAAAGGACTTATCTTTCTTCTTGATAGACTTCAGTGAAACATCTGATCT AGGATCTTTCTAGTTGTCGTATCTGCAACCAGTAGTTTCATTAGCCTGCT TTTTGGTGTTTCACGTTTTTGGTGTTTTCCATTTCCATGTGCAAGACTGA GAGGTGCAGGAGCCAATGGGTAGACAAGAGCTGATGGAATATCAATTGCG CGTTCATTTCTAATTGAAAACGAAAGAAGGGTACCAATGATATCCCGATT TACTTCTATTATtgtatttgcaaaatattgacatttaatgACTGATGTTG AATATGTCTTGAATATGTAGATAGGAACTCGGCTCAATCTGTCTTTCTTT GGATTTCCTTTGACACTTGACTGCTCAAATTCGTCTCGCATTCTCTTCCC GTCttcttctattttcaaaatcttgcttGCAAACGATTCCTCAACCATTT CCCCAGAGAAGAAAAGTTGTATAGCCCCTCCAGACCTAAATCAAAAGGAT TGATGTATTTCCCTTTCACCACCTGAAAAATTTTTGTCACATGCTTTTCA CTGGCAAGAATCTTGGACGGTCTCATAGGCTTGTATTTATCACATAATCT TAAAGTGCCAGCCATCTTTTTTAATTCAGAGGTTGTTTTAGCTATGTCAG CTCGATTCAAACACCATTTTAGAACTGCGTCCTTTTTGTTCGCAAAAAAC TTGATTCCACCTGAAAATGACGAATTTTTCTGTAGTAACCCTTCTATTTG ATTTATCTCCAGTGATCAAACGCGAGGTAAATACATATTGATTTTGATTG GGAAAGATTTCATATTGAACCTAATTCCCTATTAATGTAATTATTTATCT GAGGTTTTAGCATCGCGGTTGATCGACTGTTCTCCACGCTGATCTGTGGA AGGATAAGCTGATTGAGCTTGGACAGAAATTCCAGACATTTTGAAGGTCT CTGTCAAGCCAGGGTATCGCAGATCAATCTCCttcattacacgttttttt ttttatgaacgtcaaaaattttcgaagccttcagatgttcttagtttttt gaatttgaagcctaaaaatgttcttaaaatgttcttattttcagcatttt ttgagcattttgatgtaatttcttaagaaaatgNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccaa agccttagaatgttcttagaatgttcttaaatttttgggcctcgaagcct tatgttcttatatagtttgttcttataaaaaaaaacgtgtatttggaCAT ACCACAAGACATATCTTGCATAGTTGGTTTTGTTAAATGCAAAATAGAAA GGCAACATCTCATCCCACGCAAGGCAGCATCTCATCCCACGCTTGCAATC TCATCTCGAAGTTGTTTGTTTGGACGGCTGTGTGAATCTTGTGCTGAATT CTCACGATGTTCAGGTGTACCATCCAAAACTAGGCTGTTTTGCCGACTTT CCAATCTCGAACATCTTGACCGTAGCGCTCGTATCTTTGTAAGAATTCGT TCCAATTCGGAGGTATCATGCTGTCAAAGCTCTCAGGGTCAGAACTGATG TCGTACAAACAATCGGGCACTTTCGGagctttttgaaataaaactcacGC AACCCACGCACTTAAACATGATAACTTAAACACGGCACTTTTCAGAGATT CTTTTAacaaaaatgttacaaaatttaCATTACAAACGTTTTGAATAACT GAAAACACTCTCTAGATTAGATTGAAAATCCAACGTAACACATTGTGTAA TGAGATAAGGCTGATTATTGCTGATAATTAGATATAAATTGGTCACAAAA GGTTTCTAGATCTATAAAGGTGTCATATTTTTCTTTCGATTAAACTGACT ACAACCAAATTTGAGCCTAATTGGTGTAATTCTGATTTGTGTGAACCGCA CTGTCATTAAAGTCTCTTTGGTagtctttaattttgaaaaaaagtgattt ttttgtaaagATCTAACATTTTTGGACATTTTACCCCGGATTTGaggtat tttgaaattttctaactTAAAAACTGATAAATTTATTAGTTTAAAGGCTT TTTATTGGGAATTTTAATAGTTTTAGACTGTTTGAGGGGTTAATCGCGAG ACATTAgctcaaaaatttgaattttggtcaaaaaatgagtattttttgca atttttaccccctgaaaataaAGAATTAAGCCCCCAGTGGATAGTTAATC CTGATATTATGATGAGAGCAATCACGATCTATCACCACATAACCTTTGAA GTATCATAAACAGTTTTTCGTTTGCGTAGGACCACTTTTCTGCTGAAAAA ATACGATTTTGGGGGTTTTTTTCGTGTTTTACCCCCTGTTTTCTTTGGTA CAGAACCCCCtggtaaatatttttgaattttcttttttcaaaatgttatt TTACCTATTTGTAACATATTTGGAAAGTTTCAAGCAATAACGATTTTTAG ATAGTGCAGAATCGCACTTCTAAGTTACCATGGTGTTTCAAGTCTCAAGC AAAATCCCTTACAAATTGGTATTTTGGCTAAAAACACCCCCACTTACCTA GCTTACCATTTTAGTTAGCCCCCTTAACAGCCTATTTACCGTCTCATTCC TGAAAATATAGCATCTTAGCAACCCAAAACCACCATCAAACATTTTTCAC CTCTTGGGGGACGCAGACCCCCCAGATCGACCTGGTCTAAGGATAGAAAG TTAGATAGACATTTTACAAATTACGGcacgttttgaaattattgccatga tgattaactcccagcggattttattacaactacttattcttttcataaaa aaccaTTTAATGTCTCCAGGGATGtgatcaccatggtaattgtttgaata cgaggcaagtgatgttcgtgacgtaatttatgaaaaggtctattatggaA TTTTTTCGTTTCAGAATCCCTGTATGCAGAATGCATTGTTATGTGAACAT GGAAGTATTTGCTCACCGAACCGCTTGACTAAAACATATCAATGTCTCCA TTGTTTCCCTCCATACACTGGCAAACATTGCAATGAAACTGGTAATTATT ATTATTGATATGCGTAAGCCAAGATTACGTCGTTTTTCATATCGAAAACA CTGGAATTTTACCCCTGagtgttacacgttttttttttaagaaaaacgag gttcagaatgcctaaaaactaagaaacatgctgaggctgagaatgagaaa ataaaattttttaattcgttttttaagAGCTTTGCaaacaaaacaaatgt tttttatttctttccatgaaaaataggctgtcaatctaatcactgtagaa agaattcAACAAAGATGAAgggcaaatattaccatattaatgtctagcag actgtattaATATACATATTTACTATTGACGAATTCCTCAGAAatctcca agtgtaattgaaattggtttctttcaaaaaaatcttctacatgattccca aatgtataacagtaattactaagtTATTTATTATGGTAATGTTACTttaa tggaatcgaaataattGACCAAATCTTTTTGTTACGATTCTTGACTCTTT TTAAAAGGCGttgatgacatttttaagttgtgttttcaatgacgcgaaaa aaataatatcaactttgaacttaatccaagatcttaaatggtcgtcatgg ttacttttctctgccttgattgcgcgctgaatagaatccgGATGGTCGGC ACCGGGCGATGTATGATTTCAGCCTGTGCTTTCACAGTAAAGATTGGCTC CactcatttaccttgagtgccacCCCCCCCTCCCCACGGTTTTATCCCGT GGAATCGAAAACTTCGGTTTCTCTGTGTAAATTAATTACAATTTAAGATT TAACCAATGCTGGGCTACATATTACCAtctagtagggggaaatttgttcg tttttttgaggtcgctcgatttttttagtcaaagcacttgttatacattt ttggaaagctaaggggtaggggaatcaaaataNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctttg actaaaaaaatcgagcgattttacaaatttccccctactaatccTTCATT TTAAACATAAAACCTCAAAGGCCAGAAATTTGAAGTTATCTCTTGTGTAG ACTGTAGCAATGCTGGTTTAATTTTCTTGATTATTTTGTCATTTCTTCTC CCTCTCTCTTTGAGGCGGCCGGTCGGGCAAGGGACGCCAAACCGGGTTCT AGACTTTTCAACCTTTCCTTTTCTGCTATACTTAACTATATGGTTAGACT TTGTGCCtatgttttaatttctttcttcttgttaAGCTGACAGGTGACTC TAGAGTGGCAGGAGATGCTTAATCAAGCTAGCGCACCTGATCTCAAACTT CGGTCTTCAGCTTATCACTTCCTTTTGTGTCTTGTGCAttccttttgttt tttactttttggacctaccccggtggggtggaggtcctataaattaaccc atgttcgttagttagttagtacgttagttaccaacttttctcgagattgg ctcatttaatttttctgattttttgcacaaaggtgttactataaaccctc gaatgtgacggagcccgattttcgaaaaaaaaaattttccggccggtaga accggaaatgtcccgaaaaaagcggttttttgagattNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaata gatatataaatcgaaatttaaaattatacattacttccattaaattctaa ttattcgttttataaataggtaggtccattaaagtattacttgttttatt tctttcttcATTGGGTTTTTATTACAGATTGTCATGGTTAGTCGCTAGTT TGTATCTTCTTCAGTGTATATAACTTcactatatttctttttttaaggtC CATCGATACCCTCGACGATTTCGCAAGGTAAGATAAAAAAGGGTGCGACA ATTTCGTTGCTCCGAGGAAAATAGAGATCTTTCAGGCTTTTGGTGGGTTG TTTAACgaaagaaaatattattattattctagACGTCTATTGGtaaattt tgaactttgaaatctattttttttaaatgcaatGTAAAGATACATCCAGG TTTCCTTGTGAAAAGGGAAGGTCTTTGTGGGGTTTTTATGCATGATCGTT GATCTTGAAAATGTTATCTTAAATCGTTTTTGGTTGGTTTTATGTTCTAT CCAcaacagggtgtccggaaaaaagtatcgagctgaaacacaactatgag taaaaataatttatgtgtatgttcacaaagttgtattttaaggcttgggg acacgagaagttttttttcacgtttgtgcaatgcaacatgcgggaacatg ctccatcccaccaacacaagaaaaaagtgcttgtcctatggtttcttttt ttgttcatgggacaaaaagtgagggaaatacctaaaagacacgctgattt tgtcccaaaAAGaagattcgaatcaattttgctccattgtcccagggaca agaaagaaagaaaaatggggttgAGACACGaaaaagcgtttcaggttggt gggatggtgtccccaagcctttaagtTCCCCCTCCTTTTTTGAAGATGTA TATTTTGTCCAACAAAGGATTTTTAAAAAAGGTTATCGATTAATGCCTTT TAGAAAACAAACTTTTCTATATAATAAGGCTGTGATTTCTCATATTTCGG CGTGGATCATCACAAACTTATCTCcacaataatattttcaaactcGATGC TTTTTTCCAGACAGCATGTACAATCTGGATAACGTTTTTTTACAAactct ttattttcattgtttttaaaagtagaaaaaaactttttcaaaagtcgTTT TTAAACTATTATCCAATTGACAGTGAGCTGATTTCACAAAATTCGTTTAC CAAATCAATCATCTATTTTTAAGACATTTTACTTGGTAAAAACGCTTCCT GTATTGCTTTGAAAGAACATTTCAATATACCAAACGGTTTGCAACAATAC ACAATACATCCATGGAGAGACCAACGAAAAATTCATATAAAATGTTCAGG TTCGGAAGATAATTACATTTACTTTGAAGGAAGAATATTGTtccaatttt tgtaaattttaggTAGACtcgctaattttttttccaaagctATTTCGcga gattttattttatttcaagtaTCATTTCATCAGATAGATATGCAGTTCTT TAAGGAACTAAAAATttgattcgaattacagagagtaatttcaGGAAAAC TCGAATGATAAGAATTTGAATTAGAACGAGTTGACTGTATGTCTACACTT TTCTGAAACTTTTAAACTAGctgatatattttctttttctttttaaaatc aggAAAAGTTATGAGATTTACCCGACTAGACACAAGAGACCAAGCTCCAG TGAAGGAACTAAAAGCTGCGTCAATGGAAGATGGTCTTGTGCTTGAGAAT AATTATCGTGCGCATGCGTCCTTTCTACGCATGGCTAAAATACTAATGAA CTTTGAAACCATACGCATGAAATGTGTTCGAAACACAACAGAATTAGTTT CACTGGGCAACAAAAGACAAGCTTCTGATGCCGATTTCAATGTTATACGA TATTTCTCAGGAGAAAGTGATAGCCGACCTGTGGAGACGACAAGTATTTG GAGATCCAGGCTGAATGGGGTGTGGGATGATTACCCAATTGATGCAGTCG ACGACCTGTTATCTGCTGACAATGTTGAAAAAGAATATCGACCTTTCAAA GATATTTATATAGGTAATGATGGTTTAAAAATGACATTCACAAATGAATC ACAACAATGCTTTGGTCCTGAAGGCGATTTTAACCATTATTTACTCGAAG TTTATTGATGAGAAATGGAAAcatatttctgacaaaaaaatGACCTTTCA AAGATATTTATATAGGTAATGATGGTTTAAAAATGACAGTATNCGACAGA ATAATGACCTTTCAAAGATATTTATATAGGTAATGATGatttaaaaatga cattcaCCAATGAATCGCAACAATGTTTTGGTCCTGAAGGCGATTTTAAC CATTATTTACTCGAAGTTTATTGATGAGAAATGGAAACATATTTCTGAAA GAATATCGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAAT GACAGTATGATACTGGTCCGAACTTCCTATATCTGTAACCGAAAAATGAA TCGATTTTAGACACCGAAGTTTTTGCTTTCGTTTAGGTACTCGGTATCGT ACTTTTGTGAGGGAGATTAataccaatgaagtataagcccgaagggctag aagagAATCTTTGACCtgtctcaggcaagaaaaagtgaagccttaaaatg ggcgctgcatttttgacgacgggTTGAATGTAGCAGTCCTTTTGTTTTct agtgatattttttttcgaaatttagtggtaaattttagtttcaatcagcc acgtgtgtaaaaaccaggtggCTGGCGcaattttggtaggatttgttggc ttcaaatcctaccaaggagattcacTTCTATTTCATTCAATTCATTGGTT AATAATTTGGGCCATTAATGGATCTTTTTCGGAGGGGGGGTTATTATTTT TAGCTGATCACTGAAATTATTCttcaatttaattatgttttcTAAGACTG TACATTTTTGTTCTTacatttacaatttttcatctttggAAGAAACTGAG CATAATTTTAGCCAAAACAACTAAGTAACTATTTTTCCAATTGAATTAAA CTTCAATTAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000028XLOC_000028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000054-exon-sc0000001-1491911889:1155583..1155633TCONS_00000054-exon-sc0000001-1491911889:1155583..1155633Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1510915933:1155583..1155633TCONS_00000054-exon-sc0000001-1510915933:1155583..1155633Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1575043694:1155583..1155633TCONS_00000054-exon-sc0000001-1575043694:1155583..1155633Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1491911889:1156866..1157330TCONS_00000054-exon-sc0000001-1491911889:1156866..1157330Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1510915933:1156866..1157330TCONS_00000054-exon-sc0000001-1510915933:1156866..1157330Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1575043694:1156866..1157330TCONS_00000054-exon-sc0000001-1575043694:1156866..1157330Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1491911889:1163397..1163523TCONS_00000054-exon-sc0000001-1491911889:1163397..1163523Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1510915933:1163397..1163523TCONS_00000054-exon-sc0000001-1510915933:1163397..1163523Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1575043694:1163397..1163523TCONS_00000054-exon-sc0000001-1575043694:1163397..1163523Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1491911889:1168030..1168059TCONS_00000054-exon-sc0000001-1491911889:1168030..1168059Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1510915933:1168030..1168059TCONS_00000054-exon-sc0000001-1510915933:1168030..1168059Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1575043694:1168030..1168059TCONS_00000054-exon-sc0000001-1575043694:1168030..1168059Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1491911889:1169056..1169181TCONS_00000054-exon-sc0000001-1491911889:1169056..1169181Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1510915933:1169056..1169181TCONS_00000054-exon-sc0000001-1510915933:1169056..1169181Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1575043694:1169056..1169181TCONS_00000054-exon-sc0000001-1575043694:1169056..1169181Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1491911889:1169485..1170895TCONS_00000054-exon-sc0000001-1491911889:1169485..1170895Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1510915933:1169485..1170895TCONS_00000054-exon-sc0000001-1510915933:1169485..1170895Clytia hemisphaericaexon
TCONS_00000054-exon-sc0000001-1575043694:1169485..1170895TCONS_00000054-exon-sc0000001-1575043694:1169485..1170895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1155583..1170895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411296 0.5202 0.221469 0.067471 0.084479 0.0756243 0.109486 0.320326 0.430056 0.252567 0.442179 0.0513852 1.81874 1.1346 0.613837 0.665989 0.303525 0.354786 3.33507 3.67532 0.390231 0.860683 0.930178 7.6446e-05 0.205208 0.527223 0.123356 0 0.610307 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
in the tripal_feature_cv_term.tpl.php