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TCONS_00000050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000050
Unique NameTCONS_00000050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000050 ID=TCONS_00000050|Name=TCONS_00000050|organism=Clytia hemisphaerica|type=transcript|length=2212bp
GGACCACCATCTTTGAAATGAAatagtttttataagaaccaactAAATTT
AGCTTCGGCTTCTCTTGTATTCTCGAAATCTTTAACTTAAGTctcgaatg
ttcttaaaatgttcttaaaatactCTGTTTCTTTACTAATTGCTTTGGTG
TTTTCTGGAATACGAGACTAGGattattctaaattttgttCTCAGgttca
aaacaaattatataactattgttcttatttaaaatcttttttatcaaaaa
gcaacTCCTTTTTGGTTGAGACTTCCTTCCGTGTTCACACTTTTCACAAT
CAAAAATAACATACAGTTTCCTCCGTTCCcatccattcagacgtacataT
TACATATAAGCAACATTACATAAAAATTCACCAAACTAAGAAGTGATAAG
CAGAATCACTGTACGTATGTGGAAGCCATGAAAATTGAGTAAATCAGGAG
AACCTAGTTGGCAGACAAGCATTTAACCCGTCTTTTGACTTGTTCATTTC
AACAACATTATACAAACATCTAATCAAGTTTCCTTCGTTGGTAATTGACC
GACCAATTAATGACGATGTGCAGTTATCAACATAccaatttatttttcat
atctatttttcttcaaatctcTTCTATTTACACCGTTCCGCAAATATTCA
CCAAGGTTGTTGGTGGTGAAAACGTCAGGATTGAAGGTATTGATGCAATT
TATGAAAGATCAGTATCCAGTCCAACTGAATGTTCCCTAATATGTCAACG
CCATAAATGTGTTTTCGCCCAAACCGTACCTCAAGAGAAACAGCCAGGTC
TTAAATGTTCGTTATTCAGCAATATTGAAGATGTCTCGGCTGTATTGGTG
CATCATAAAAGCGCCAAGATTGTAAAGTTGAATGAACAGCTTTCTTGCAG
CAACGAAGATCAAGATCCGATTCTTCCACTAGCACCATCACCGCCACTAA
GCAGTTTACCGGAATGTCTTGATTGGTATGAGAATGGATCTGAAGACGAT
GGTGTGTATAACATAACCATCGGTGGAAAATCAACTCCAGTCTATTGTAT
AATGTAAGATCAACAAAGTTTCGGAGCAGGATGGACAGTTTTCCAGCGCC
GTAAAGACGGGTTTGTCGATTTCTACAGATCATGGTTGGACTACAAGGTT
GGATTTGGTAATATCCATGGTAACCACTGGCTTGGTTTGGAGAAGATTCA
TCAATTCACCAAATCCAAACCAACTGTCGAAGTTCTCATCTTTGCTAAAC
GATTTATTGGCGATACAAGATTTGAACATTTTGAagGTTTTTCAGTGGAT
GGCGAAATCACAAAGTACAGAATAACAAGTGGTAGAAAAACAGGTGTAAA
TTACGGGAGAGATTGGACAGCTTTGAATGGGATGAGATTCAGCACATTCG
ATTCAGATAATGATAATTTTGGAGATAGTAATTGTGCCCAAAATTACCCT
TCAGGTTGGTGGATGAACAGCTGTTTTCCAATCAATCTGAATGGTCGTTA
CCGATCGAACGGAGGTGTACCATCATCGTCTCAAGGGATCATTTGGGAAG
AATTTGCAGGTCCTGTTGAATCTCTCAAAGAAACGCTAATCATGATGAGA
AGTAAAAAAGAAGAATCGCTTGAATCGTTTGAATCAATTTCAATCGATTG
ATGAATCGATTGAATCGTTTTCAATCGATGATTGATCATTATTATTACAC
TTGAGTgtatcttaaaatattttattatgtATTTGTTATTTATGTATTTA
TGTAAGCAAGTTCCTTGATGTAAGTGAGCCGTGATTAGATAAGATATCCT
ATCTAGGTCACATGAAATTCATTACCATAGAATTTCAGCGTTTGACCAAT
CAGAAACGTCGCGGATAACAATAGCAATAACTTTTTTTACTTGGAAAAag
cttaaagcactccatctTACCCTTCGAGCTTTACAGAAATTTGTGATTTG
TACTCTTATCTTCACAAACGCACAATGGCAAACTTCTATTGACTAGAGTT
GTTGAAGGTTTTGTTTTACTATATTAGTGTTCCattttcatatcagacac
atatttcatattgggacagtgtctacctattgttatattgtactgatata
aaaaaaaaatttcttttcttctttctgaccaatcttgctatCTTGCCAAT
tcgaaaaagcttgtaaattgaaattgacgagtaagcaaacaatttcactc
ttatttaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00000050-protein

>TCONS_00000050-protein ID=TCONS_00000050-protein|Name=TCONS_00000050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MTMCSYQHTNLFFISIFLQISSIYTVPQIFTKVVGGENVRIEGIDAIYER
SVSSPTECSLICQRHKCVFAQTVPQEKQPGLKCSLFSNIEDVSAVLVHHK
SAKIVKLNEQLSCSNEDQDPILPLAPSPPLSSLPECLDWYENGSEDDGVY
NITIGGKSTPVYCIM
Run BLAST on NCBI

transcript from alignment at sc0000001:1140426..1144762+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000050 ID=TCONS_00000050|Name=TCONS_00000050|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000001:1140426..1144762+ (Clytia hemisphaerica)
GGACCACCATCTTTGAAATGAAatagtttttataagaaccaactAAATTT AGCTTCGGCTTCTCTTGTATTCTCGAAATCTTTAACTTAAGTctcgaatg ttcttaaaatgttcttaaaatactCTGTTTCTTTACTAATTGCTTTGGTG TTTTCTGGAATACGAGACTAGGattattctaaattttgttCTCAGgttca aaacaaattatataactattgttcttatttaaaatcttttttatcaaaaa gcaacTCCTTTTTGGTTGAGACTTCCTTCCGTGTTCACACTTTTCACAAT CAAAAATAACATACAGTTTCCTCCGTTCCcatccattcagacgtacataT TACATATAAGCAACATTACATAAAAATTCACCAAACTAAGAAGTGATAAG CAGAATCACTGTACGTATGTGGAAGCCATGAAAATTGAGTAAATCAGGAG AACCTAGTTGGCAGACAAGCATTTAACCCGTCTTTTGACTTGTTCATTTC AACAACATTATACAAACATCTAATCAAGTTTCCTTCGTTGGTAATTGACC GACCAATTAATGACGATGTGCAGTTATCAACATAccaatttatttttcat atctatttttcttcaaatctcTTCTATTTACACCGTTCCGCAAATATTCA CCAAGGTTGTTGGTGGTGAAAACGTCAGGATTGAAGGTATTGATGCAATT TATGAAAGATCAGTATCCAGTCCAACTGAATGTTCCCTAATATGTCAACG CCATAAATGTGTTTTCGCCCAAACCGTACCTCAAGAGAAACAGCCAGGTC TTAAATGTTCGTTATTCAGCAATATTGAAGATGTCTCGGCTGTATTGGTG CATCATAAAAGCGCCAAGATTGTAAAGTTGAATGAACAGCTTTCTTGCAG CAACGAAGATCAAGATCCGATTCTTCCACTAGCACCATCACCGCCACTAA GCAGTTTACCGGAATGTCTTGATTGGTATGAGAATGGATCTGAAGACGAT GGTGTGTATAACATAACCATCGGTGGAAAATCAACTCCAGTCTATTGTAT AATGTAAGATCAACAAAGTTTCGGAGCAGGTAGGTTCCTCTTGAATTTTT ACCATATATCTACTAATTGGAATCTCAAATATGGATTTGTTTAACTGGTT CACAGTCCCGATAGAAAGATGACGTCGAAAATCAAGGTTGTTTGGATCAC AAAAGTCCTACAAACAAACTTCCAATCCTTTCCCTGTCTACAATAACAAC GATATTAACAAAGAAGGAAACGGAAAAAGCTTTCTCTTTGCTCACAGCTT GTAGGTACTGTAGAGAGCAGAATTAAACTTCAAAGTCTTATGAATCGCAT CATTAGAAAAGACTTAACGGGGAAATAAAATTTCCGTGGTTTAAGAAGAT GGGCGTTTTTTAAGAACAGATATTCGCAGGTTGACACCtactttttaatg aatttcttttcttcaatatcttaggaaattcatgattttttaattttcaa tatttctgcGAAGCTAACTTTTACGGTAGAAACCCAAACTGCACCGCGAA AATTGGTTCCATTAAGTTATCTTTAATGATACCGATTTTTCAGTGTAATT TGCTCTATTGTTTTGTTTAGGATGGACAGTTTTCCAGCGCCGTAAAGACG GGTTTGTCGATTTCTACAGATCATGGTTGGACTACAAGGTTGGATTTGGT AATATCCATGGTAACCACTGGCTTGGTTTGGAGAAGATTCATCAATTCAC CAAATCCAAACCAACTGTCGAAGTTCTCATCTTTGCTAAACGATTTATTG GCGATACAAGATTTGAACATTTTGAaggtacagttgacgctctctaattc gatcttcaaggggattttgaattttcatcgaataagggagcttatcgaat aagagagcgtcgtttatgagagtttcttgttgacggggactttaaatatc atcgaataagggagcctatcgaatagtagaacgtcgaattagagagcgtc gactGTAATGTAAATTGTTTGCTAAATGCGTTTGAATTTTCCACTGGTGG TAACAAATTTCTTTGCGTTCCTTTGCGGGGTTTTCCATCATGTATtcctt ctttttgatttttaactcATTTTATTAACAGAAACCCGACAAACTCAACT AAAGGCCCGTCACTTGCCactaatttttaatttcaaactaACTTTGCTTC AACTattgttaaaggttttatttttacataagtgtccccgtttcatatca gacacaatcaggacagtgtcttcctattgttatattatgctgatataagc aaaaaatgttgttcttttcctctttctgaccaatcttgctccacatccgt gtcaattcaacgtgaaaaagcttgtaaattaaaattgataactaagcaaa cgatatcactcttatttaaaaacaaaacccttaactttgtttttaccttt tttatcaTCAAGGTTTTTCAGTGGATGGCGAAATCACAAAGTACAGAATA ACAAGTGGTAGAAAAACAGGTGTAAATTACGGGAGAGATTGGACAGCTTT GAATGGGATGAGATTCAGCACATTCGATTCAGATAATGATAATTTTGGAG ATAGTAATTGTGCCCAAAATTACCCTTCAGGTAAATTGAAAGACCACTAA TTCATTTACTGTTATCTACTCTTAGgctccaaataaacgggccccacCGC TTGTTAACTTTTCGCCCCTTATTTCGCtctaaaaagcctgattttaacct atatttaccttattttttggTTTTCAGAAGTACGATTTCCAACctcccgg caattaggtcccctcccgtttatttggaacctaagagtacttcgGTAATA CTCTCAGCTCAGATGCCTGATAAACGGGGAGAGGGGTTTGAATAATCAGG GGGGGAGCTAATTTTCGAGGAGGTTGGTAATTGTACACATAAATGCCCCC AAAATAAGGTAGTTATTAGCAATTTACAGCGCTtgttttaaaaacctttt ttggttGTGTAAGAGAACGATGGACAGATCAGGCCTTATAAGAAGAACAA GCACTCGCTATCCTAGGGTCGAGAAACTACTGCGCTTACCCGACTCTGTC AACTCTTGACGCATAGAGCTTCCGGTGCATAATAACtataaacgcttttt ttataagaatggtgtaaatccatttcatcatggatattctcaactttttt gggaaaatcatcctgaaatattcttacagcattcttaggttaggatccta attcagactagatttaacatttagtacatacgtctcaagcataaaatagc atttttgtgaaaggagtgagccttacatGCTGGTAaatggcaatttataa ttgaaaattctctaaaaatgacagacattcttagcttgagtagaaAAATT CCATTAaaggtgatattcttagcatattcttaatatataatttttggcca ttttcatcatggagattcttataaaaaagtgtatccttataaaaaaacac gtgtaCTCTAAGTTAGCTTGATGGGATTTGAAGAGGGTTACAAACATAAG ACCAACTTTGGAACGTTTATTTTTCATAGGTTGGTGGATGAACAGCTGTT TTCCAATCAATCTGAATGGTCGTTACCGATCGAACGGAGGTGTACCATCA TCGTCTCAAGGGATCATTTGGGAAGAATTTGCAGGTCCTGTTGAATCTCT CAAAGAAACGCTAATCATGATGAGAAGTAAAAAAGAAGAATCGCTTGAAT CGTTTGAATCAATTTCAATCGATTGATGAATCGATTGAATCGTTTTCAAT CGATGATTGATCATTATTATTACACTTGAGTgtatcttaaaatattttat tatgtATTTGTTATTTATGTATTTATGTAAGCAAGTTCCTTGATGTAAGT GAGCCGTGATTAGATAAGATATCCTATCTAGGTCACATGAAATTCATTAC CATAGAATTTCAGCGTTTGACCAATCAGAAACGTCGCGGATAACAATAGC AATAACTTTTTTTACTTGGAAAAagcttaaagcactccatctTACCCTTC GAGCTTTACAGAAATTTGTGATTTGTACTCTTATCTTCACAAACGCACAA TGGCAAACTTCTATTGACTAGAGTTGTTGAAGGTTTTGTTTTACTATATT AGTGTTCCattttcatatcagacacatatttcatattgggacagtgtcta cctattgttatattgtactgatataaaaaaaaaatttcttttcttctttc tgaccaatcttgctatCTTGCCAATtcgaaaaagcttgtaaattgaaatt gacgagtaagcaaacaatttcactcttatttaaaaac

Coding sequence (CDS) from alignment at sc0000001:1140426..1144762+

>TCONS_00000050 ID=TCONS_00000050|Name=TCONS_00000050|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000001:1140426..1144762+ (Clytia hemisphaerica)
ATGACGATGTGCAGTTATCAACATAccaatttatttttcatatctatttt
tcttcaaatctcTTCTATTTACACCGTTCCGCAAATATTCACCAAGGTTG
TTGGTGGTGAAAACGTCAGGATTGAAGGTATTGATGCAATTTATGAAAGA
TCAGTATCCAGTCCAACTGAATGTTCCCTAATATGTCAACGCCATAAATG
TGTTTTCGCCCAAACCGTACCTCAAGAGAAACAGCCAGGTCTTAAATGTT
CGTTATTCAGCAATATTGAAGATGTCTCGGCTGTATTGGTGCATCATAAA
AGCGCCAAGATTGTAAAGTTGAATGAACAGCTTTCTTGCAGCAACGAAGA
TCAAGATCCGATTCTTCCACTAGCACCATCACCGCCACTAAGCAGTTTAC
CGGAATGTCTTGATTGGTATGAGAATGGATCTGAAGACGATGGTGTGTAT
AACATAACCATCGGTGGAAAATCAACTCCAGTCTATTGTATAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000029XLOC_000029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000050-exon-sc0000001-1491911889:1140426..1141504TCONS_00000050-exon-sc0000001-1491911889:1140426..1141504Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1510915933:1140426..1141504TCONS_00000050-exon-sc0000001-1510915933:1140426..1141504Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1575043694:1140426..1141504TCONS_00000050-exon-sc0000001-1575043694:1140426..1141504Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1491911889:1142046..1142252TCONS_00000050-exon-sc0000001-1491911889:1142046..1142252Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1510915933:1142046..1142252TCONS_00000050-exon-sc0000001-1510915933:1142046..1142252Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1575043694:1142046..1142252TCONS_00000050-exon-sc0000001-1575043694:1142046..1142252Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1491911889:1142888..1143055TCONS_00000050-exon-sc0000001-1491911889:1142888..1143055Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1510915933:1142888..1143055TCONS_00000050-exon-sc0000001-1510915933:1142888..1143055Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1575043694:1142888..1143055TCONS_00000050-exon-sc0000001-1575043694:1142888..1143055Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1491911889:1144005..1144762TCONS_00000050-exon-sc0000001-1491911889:1144005..1144762Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1510915933:1144005..1144762TCONS_00000050-exon-sc0000001-1510915933:1144005..1144762Clytia hemisphaericaexon
TCONS_00000050-exon-sc0000001-1575043694:1144005..1144762TCONS_00000050-exon-sc0000001-1575043694:1144005..1144762Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000050-proteinTCONS_00000050-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1140426..1144762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.471336 0.518169 0.450048 0.501713 0.382176 0.339751 0.731406 0.822217 6.20581 7.86792 5.34791 8.52709 0.276368 0.0511236 0.312291 0.259041 0.611642 0.642647 0.244771 0.14404 0.439144 0.400949 0.223394 0.136272 0.190238 0.192476 0.801474 0.233278 0.55046 0.440653
Blast
BLAST of TCONS_00000050 vs. Swiss-Prot (Human)
Match: ANGL6 (Angiopoietin-related protein 6 OS=Homo sapiens GN=ANGPTL6 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.710e-29
Identity = 75/217 (34.56%), Postives = 116/217 (53.46%), Query Frame = 2
Query:  962 ECLDWYENGSEDDGVYNITIGGKSTPVYCIM*DQQSFGAGWTVFQRRKDGFVDFYRSWLDYKVGFGNIHGNHWLGLEKIHQFTKSKPTVEVLIFAKRFIGDTRFEHFEGFSVDGEITKYRITSGRKTGVNYGRDWTALNGMRXXXXXXXXXXXXXXXCAQNYPSGWWMNSCFPINLNGRYRSNGGVPSSSQ-GIIWEEFAGPVESLKETLIMMRSKK 1609
            +C +  + G E  GVY + +G     V+C   +QQ  G GWTV QRR+DG V+F+ +W  YK GFG   G +WLGLE ++Q T S+   E+L+  + + G     H++GFS++ E   YR+  G+  G + G D  + +  +  +    + +    NCA     GWW ++C   NLNG +   G   S  Q G+ W EF G   SL++  +++R  K
Sbjct:  259 DCAEARQAGHEQSGVYELRVGRHVVSVWC---EQQLEGGGWTVIQRRQDGSVNFFTTWQHYKAGFGRPDGEYWLGLEPVYQLT-SRGDHELLVLLEDWGGRGARAHYDGFSLEPESDHYRLRLGQYHG-DAG-DSLSWHNDKPFSTVDRDRDSYSGNCALYQRGGWWYHACAHSNLNGVWHHGGHYRSRYQDGVYWAEFRGGAYSLRKAAMLIRPLK 469          
The following BLAST results are available for this feature:
BLAST of TCONS_00000050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL61.710e-2934.56Angiopoietin-related protein 6 OS=Homo sapiens GN=... [more]
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