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TCONS_00000049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000049
Unique NameTCONS_00000049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000049 ID=TCONS_00000049|Name=TCONS_00000049|organism=Clytia hemisphaerica|type=transcript|length=902bp
TTTCAGCTCACCCCATTACCAATATATGTTTCATTCACCTATCGCATAAT
CAACAGCATCTTCATGATGGACTGGTGGCTTTCCCTTTCACTGTCTGTTT
GGTGGTCGGTGAATTTCTATTACTCAAATGTAAGTCTtgtatgtttatat
tttttaggCCGGAATCGGTTTTTTCAACACAGTTGAACAGTCGTTTTTCG
TACTCTAAAGTCGGGGAAATAAGGGAGAAATAATAATCTGGAAAAAGCCG
TGAGATTAGTTTGGAAAAAACTATGCTAAAATAACGAAACAAAGTGTCAT
ATTCGACGTATTTGCAGTATCTGACACATCCTACAGCCTAGCATAGCCTT
TTCCTATCCCACAACGCGAAGCTGGTTTATAACGTTTTAcgtcttttgtt
ttttaattgaattgaCATCAGTTCCTTGAAACATAATACAATGACTTCAA
AAGTGATACCAATCTCCCCCGACgattatgtgtttttttttttgcgcagt
ttaaaataaattataaactTGGTTTTCGGGAAGGCACTGGCTAGGAGGGT
ATATTTGTAAAAAGTTACAGACGGGACAGTCTCAAACAAGAAAGTCATTT
CCGTTTGGTACAGGTAAAACTTAGTCTAAACTTTTGTAGTATGTTACACT
ATTTTCTACACAAAATGATACGGGAAGACCGGCATCGCTTTAGATTTTAG
AAGTTTTACCGATCTCCAAACTGGCAAGGTCGTTTTTCCGTTGATTTAGC
TAATTTTTGTTTCGTCTCGTTGTTCGATGTTGTTTTCAACATCTGTTCGC
ACGGTTGTAAAAAGTTCGGATATTTTTCAAGGCGAAAATTAATAATTGAC
GATCTTTTCATATCGGGAATGTTTTATCATGTGTCACATTTAAAAATATC
GG
Run BLAST on NCBI

transcript from alignment at sc0000001:1138292..1139193+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000049 ID=TCONS_00000049|Name=TCONS_00000049|organism=Clytia hemisphaerica|type=transcript|length=902bp|location=Sequence derived from alignment at sc0000001:1138292..1139193+ (Clytia hemisphaerica)
TTTCAGCTCACCCCATTACCAATATATGTTTCATTCACCTATCGCATAAT CAACAGCATCTTCATGATGGACTGGTGGCTTTCCCTTTCACTGTCTGTTT GGTGGTCGGTGAATTTCTATTACTCAAATGTAAGTCTtgtatgtttatat tttttaggCCGGAATCGGTTTTTTCAACACAGTTGAACAGTCGTTTTTCG TACTCTAAAGTCGGGGAAATAAGGGAGAAATAATAATCTGGAAAAAGCCG TGAGATTAGTTTGGAAAAAACTATGCTAAAATAACGAAACAAAGTGTCAT ATTCGACGTATTTGCAGTATCTGACACATCCTACAGCCTAGCATAGCCTT TTCCTATCCCACAACGCGAAGCTGGTTTATAACGTTTTAcgtcttttgtt ttttaattgaattgaCATCAGTTCCTTGAAACATAATACAATGACTTCAA AAGTGATACCAATCTCCCCCGACgattatgtgtttttttttttgcgcagt ttaaaataaattataaactTGGTTTTCGGGAAGGCACTGGCTAGGAGGGT ATATTTGTAAAAAGTTACAGACGGGACAGTCTCAAACAAGAAAGTCATTT CCGTTTGGTACAGGTAAAACTTAGTCTAAACTTTTGTAGTATGTTACACT ATTTTCTACACAAAATGATACGGGAAGACCGGCATCGCTTTAGATTTTAG AAGTTTTACCGATCTCCAAACTGGCAAGGTCGTTTTTCCGTTGATTTAGC TAATTTTTGTTTCGTCTCGTTGTTCGATGTTGTTTTCAACATCTGTTCGC ACGGTTGTAAAAAGTTCGGATATTTTTCAAGGCGAAAATTAATAATTGAC GATCTTTTCATATCGGGAATGTTTTATCATGTGTCACATTTAAAAATATC GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000028XLOC_000028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000049-exon-sc0000001-1491911889:1138292..1139193TCONS_00000049-exon-sc0000001-1491911889:1138292..1139193Clytia hemisphaericaexon
TCONS_00000049-exon-sc0000001-1510915933:1138292..1139193TCONS_00000049-exon-sc0000001-1510915933:1138292..1139193Clytia hemisphaericaexon
TCONS_00000049-exon-sc0000001-1575043694:1138292..1139193TCONS_00000049-exon-sc0000001-1575043694:1138292..1139193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1138292..1139193 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239238 0.0510259 0.34779 0.396968 0.207116 0.10911 0.0658185 0.308093 0.309089 0.16031 0.295879 0.102286 0.137829 0.286487 0.0938959 0.0326356 0 0 0.108842 0.0588301 0.103439 0.217289 0 0.056909 0.164896 0.294331 0 0 0 0.0597989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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