|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000045 ID=TCONS_00000045|Name=TCONS_00000045|organism=Clytia hemisphaerica|type=transcript|length=2494bpRun BLAST on NCBI transcript from alignment at sc0000001:1115592..1154382+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000045 ID=TCONS_00000045|Name=TCONS_00000045|organism=Clytia hemisphaerica|type=transcript|length=38791bp|location=Sequence derived from alignment at sc0000001:1115592..1154382+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000045 vs. Swiss-Prot (Human)
Match: SMO (Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 4.738e-45 Identity = 106/408 (25.98%), Postives = 191/408 (46.81%), Query Frame = 3
Query: 219 HNFPQCWQAVHSNITTSKCQQTCQYFQNHCPMLALFDSTKCFSRCVVGAENRQQKYENLLSLNCSQNTVAKTCAGNFVSSSHSSEWAIQWNYQNQKQDNEIVNTTSGCALSCDNQIQVFRSGQLQ-VDGPIICFSLLGIIASSFTVLSFLIDWKSQNRYPALILFITSICFMMCFLGWIIQFF-GVGRKISCDPTNLRRNKEPRHGDSFWCILSFILIYFSGLSTSCWFVILNYSWYISFRTMGSIKTLIQSKIKYFHFFAWGISGSFTLMALLLQAVSAHPITNICFIHLSHNQQHLHDGLVAFPFTVCLVVGEFLLLKCVIQLKKLRNDCSVFLVPKAVKNLTKTFYRMIIYGLGVLVAFTLLVF-IMYYEFNMREEWEKKHSKYIRCRLE-TVSLPTSLSKECIP 1430
N P+CW AV + + C+ + P L +T+ C + R++ + + L C+ + + C + +S + GC + C N + F + Q + I F + + + FT+ +F+ DW++ NRYPA+ILF + CF + +GW+ QF G R+I C R EP ++ C++ F+++Y++ ++ WFV+L Y+W+ SF+ +G+ + K YFH W + T+ L + V ++ ICF+ + G V P + L+VG + L++ V+ L ++++ L KA + +T R+ I+G + F L+ F +Y+F + EWE+ Y+ C+ T+ LPT K+ IP
Sbjct: 113 RNAPRCW-AVIQPLLCAVYMPKCENDRVELPSRTLCQATR--GPCAI--VERERGWPDFL--RCTPDRFPEGCTNEVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQNPL--FTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFV--GYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGF-LAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQANVTIGLPT---KQPIP 505 The following BLAST results are available for this feature:
BLAST of TCONS_00000045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.