TCONS_00000042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000042
Unique NameTCONS_00000042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000042 ID=TCONS_00000042|Name=TCONS_00000042|organism=Clytia hemisphaerica|type=transcript|length=1152bp
CGACCAATGTCAACCAATCACTGACAAtTCCACCCAAAATCCTTAGCATC
ATCAACACAACTGAAGTCACCCAGGGCGATAGTATTATCTTACAATGTAA
AACCCAGGGCAGTCCTGAACCAATCACAGTTTGGACATTTGGAGAGAATT
TCACCACCATCGCAATAGGATACGGAAGATCCAAGATGTTACCAGGAGGC
GATCTGATGATCACTGAAGCTCAAATGCAAGACACTGGCAAGTACACGTG
CATCTCTGGCAACGTTGGAGGTACAGACACAGCCTCTGGTTATCTCTTGG
TCAATGACGTTGATGAATGTGTGACGGGCAAACATAATTGCTCACATCTC
TGTACAAACACCTATGGTGGTTTCGAATGCTTTTGTTATCAAGGCTACAC
CTTATTGGCTGATCAAAGCACGTGCCAAGATGTGAACGAATGTGAGATGT
TCAATGATTGTGATCACTTCTGTTGGAACACTGAGGGAAGTTACACGTGT
GGCTGTCGTCATGGTTACCAGCTGCAAGAAGATAACAAAATATGTAAAGA
CATTGATGAATGTACCATGGGAAGTCATCAATGTGAACATAACTGCACTA
ACACCCAGGGCTCATATTTTTGTTCGTGTAACCCAGGGTTCAATTTGTCA
TCAATTGATCACGTGACCTGTAAACGCAACgaagaactaataaacaaaaC
AATACCTGTTCACCATGGCAACCATACCTTGACAACCAGAAACAACATTC
ATCCGCACATGCGCAGTGGGAGAACAACACGTCGTGTTTTACATCTAATC
ACTATCATAACACTTGTGGTGACGTTGATTCTTGTCTCGCTTGCCTTGTA
CTTAATGTGGAGAAATTATAAGAAAAGATGGAGGATGAAAGAGGCAACAT
CGAATATGAATGAACCACCGgtCAGATCAAGATGTTCAGCAatgttttct
tggaaataattttctagtttgttttcttttgtaaattgtaaaaaaataat
agtGATTTTTAGTGTATATAATTTTGTAATTAAAGATTTGTTACTTTTgt
tgtaaattattttgaagttcGTATACTTTCATAATACTTCTTTTTTTGCC
TTTTGTACATACAtacttttgaaatcaaaattgtaaatataCTGTAATTC
TT
Run BLAST on NCBI

protein sequence of TCONS_00000042-protein

>TCONS_00000042-protein ID=TCONS_00000042-protein|Name=TCONS_00000042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
TNVNQSLTIPPKILSIINTTEVTQGDSIILQCKTQGSPEPITVWTFGENF
TTIAIGYGRSKMLPGGDLMITEAQMQDTGKYTCISGNVGGTDTASGYLLV
NDVDECVTGKHNCSHLCTNTYGGFECFCYQGYTLLADQSTCQDVNECEMF
NDCDHFCWNTEGSYTCGCRHGYQLQEDNKICKDIDECTMGSHQCEHNCTN
TQGSYFCSCNPGFNLSSIDHVTCKRNEELINKTIPVHHGNHTLTTRNNIH
PHMRSGRTTRRVLHLITIITLVVTLILVSLALYLMWRNYKKRWRMKEATS
NMNEPPVRSRCSAMFSWK
Run BLAST on NCBI

transcript from alignment at sc0000001:1071776..1076558+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000042 ID=TCONS_00000042|Name=TCONS_00000042|organism=Clytia hemisphaerica|type=transcript|length=4783bp|location=Sequence derived from alignment at sc0000001:1071776..1076558+ (Clytia hemisphaerica)
CGACCAATGTCAACCAATCACTGACAAGTAAACGAATTGCTGATTCGATT
CTTTTCCTTATCATACATGATTGATTTAACgtctttatttttacttttaa
atttttgaagtcttcggattttcttgactttttgagttttaagccctaaa
atgttcttataacatgttcttattttcaccattttggaagtttttttgtc
aattttcctcaGAAATTATGTGTTTTAGAGTGCATAAAGTTTTAAAACGT
TCCCAGCTTGTTATTGATATTTTTCCACCAAAGCCAATGTTCTcgtatag
tttgctcttataaaaaacgtgtattttcaaTCATATTCTATCTGTTTTAC
ATCAAAATCATTTATTCGACTGCTTCATaaacttcaattttctttccttt
tagtTCCACCCAAAATCCTTAGCATCATCAACACAACTGAAGTCACCCAG
GGCGATAGTATTATCTTACAATGTAAAACCCAGGGCAGTCCTGAACCAAT
CACAGTTTGGACATTTGGAGAGAATTTCACCACCATCGCAATAGGATACG
GAAGATCCAAGATGTTACCAGGAGGCGATCTGATGATCACTGAAGCTCAA
ATGCAAGACACTGGTAAggttttttgttctttttttactttttcttattt
tagttCAGCATTAAAAAAAGGAGGCTATTTTAGCGTTTAACGGTTAATCG
GCTGGATGGTATTCtattttgaatgataaatttaaCTTTAATAATTAGTA
TTTACTCGGATATATTGATAGTTaaagaattgaaattattttttcaacaa
tGACAGTTTCATGTCCTATTCAAACAATTTCAGTAAAAATAAAACTCGCA
TGTTGATTATTACTGggataaaaattttgaacttcGTCGCTATTCAATTA
cacctttcttttctttttaatgctttctgatttttttttaattaataccG
TGTGATGACTATTTCAATTTCCTTCCCAGGCAAGTACACGTGCATCTCTG
GCAACGTTGGAGGTACAGACACAGCCTCTGGTTATCTCTTGGTCAATGAC
GTTGATGAATGTGTGACGGGCAAACATAATTGCTCACATCTCTGTACAAA
CACCTATGGTGGTTTCGAATGCTTTTGTTATCAAGGCTACACCTTATTGG
CTGATCAAAGCACGTGCCAAGGTATATCAAATTCTAATTGGTTCAATGTT
TAATATTTTGACTTCTAACATAACACGGTAAATGGTGGAATTGCGAATCT
GAAGATTTTCGCGTTGGTTAAAGTTCGCGAGTCAGcgtctttttcaaaaa
tttttcgagaTCACTAAAGTgccaaaaatttgcgaaaatcgcgaaagttt
aaGCGTAAAAAATACTGAGAATCAATGATTATTTTGAGGGTAAAAGGCGG
ATTCTTATTGTTCAAACACACTCCTTTAATGAGCCTGGTGATTATATACA
AAGTAATTCTTACCAATAAATTTTTCTCTCGGTTTTTCGTAGATGTGAAC
GAATGTGAGATGTTCAATGATTGTGATCACTTCTGTTGGAACACTGAGGG
AAGTTACACGTGTGGCTGTCGTCATGGTTACCAGCTGCAAGAAGATAACA
AAATATGTAAAGGTAAACTACGGCTGCTTGATTGTCTACAGTGTGTGAAC
GAACAAATTTTTATGTAAAGCTAAATCATCACATTTCATTATCTAAATTC
ccgggggggcagctgggcaaaaggatcgacgggtatgtgcgggtcctaag
ggtaccttttccaatatgtttaaaatgcactgtaagggtcggaaaaacta
gagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCCCCCCCCGGGTCTAAATTGGGCTTAGAATGATTA
AAATAAGATTAAAATTTTCTGCTCAAacaatagatattcaattccaaaga
cgattgaataggtttttgagATTAAAATAATCAAGTATGAaagtcatgaa
atttggcataaattatgaggattttttTGGGACCTGCTGTTTATCTAGAT
CAGAGTGTTTCAATTACATGGCCAGCTTTTTTTCGGTAGAGACATCTTCC
GTAAACACCTTCCAAAATGATCATTGGGCCTCAGCTAAAAACAGTGGTTT
TAGATTCCACACCaatggaaatctttttttgagTTAACCAAAAAGGTCTT
GtgaattctttattttattctgtATTACTTGAGCCATTTAAGTCTCCCTG
TTTTGAGCAAGGGTTGAAATAAGCTACCAGTTTCTTCTAAGTCTGAGAAA
AAGTTCAAACCTTTTACGATAACCTACTTCTTTACTcattttaaattctt
tctcgTAGACATTGATGAATGTACCATGGGAAGTCATCAATGTGAACATA
ACTGCACTAACACCCAGGGCTCATATTTTTGTTCGTGTAACCCAGGGTTC
AATTTGTCATCAATTGATCACGTGACCTGTAAACGTCGTAAGTCATTCGT
TTGATATTTGACAGAATATAGCTTTAGAAAGTTTATATGAATCAGAATCC
AAGTCTCATTAAAATACATTGCAGTGCTGTGCAGTGCAAAGTTTTCCCTG
TCAGACGGAacttgaaatgcaaaaaaaaacaaatatttacATTCGCCCAG
AATCTtcgattttgcaaaaaatttagACGAAAAGACCTCTTGTTATAGCT
TACTGACACGTAGATgctaacaaaatatttttattgtctTGGGATTACCA
AAGATCTTCGGAAAAGGGGAGCATATCTTTATCGACTAAGAGCCTAGAAC
CTTGGCTATGAAGGACGCAACAACTTTAAGCATAGATTTTGGACCCTCGC
CGTTTATTTGAACCAAGTTGTCCGTCAATGTGAAACCCTCGCGAAACACT
TATATGTAATATTCCAATTTGAGTCATCGAGAGCTAACCGTAAGCATCTT
TTTTGTTACTAGGCAACgaagaactaataaacaaaaCAATACCTGTTCAC
CATGGCAACCATACCTTGACAACCAGAAACAACATTCATCCGCACATGCG
CAGTGGGAGAACAACACGTCGTGTTTTACATCTAATCACTATCATAACAC
TTGTGGTGACGTTGATTCTTGTCTCGCTTGCCTTGTACTTAATGTGGAGA
AATTATAAGAAAAGATGGAGGATGAAAGAGGCAACATCGAATATGAATGA
ACCACCGGTAAGGATACTCTCTTGTTCGTTCATAAAAATATAGACTATTC
CACATAAACCGGCACTACTGACATTTTGAGGAGATCTTGATTTCTGTCAA
ATGAGTTCTCTGGAAAATCAAAGGGGGTTTGTAAATAGTCCACTGGGTCT
TTTAAAATTAGCCAGAACCCAAAGGAGGTTTTTGAATCTTGATCAAAGAA
TCTGATTTGGAAATAAAAAGTGCTTTAGCCTCCAGAATATGACCGCCTTG
GCTTTATTGGTTTCTTTGcggaaaagattttaaaatattttttcaggaaa
agccaAACTTTTTGGAATGAAAACATAGGAtaggaaaaatcaattttttg
gtgtttttgcctTAAAATCTTAATCATGTtacatttcatttattttttca
ggtCAGATCAAGATGTTCAGCAatgttttcttggaaataattttctagtt
tgttttcttttgtaaattgtaaaaaaataatagtGATTTTTAGTGTATAT
AATTTTGTAATTAAAGATTTGTTACTTTTgttgtaaattattttgaagtt
cGTATACTTTCATAATACTTCTTTTTTTGCCTTTTGTACATACAtacttt
tgaaatcaaaattgtaaatataCTGTAATTCTT

Coding sequence (CDS) from alignment at sc0000001:1071776..1076558+

>TCONS_00000042 ID=TCONS_00000042|Name=TCONS_00000042|organism=Clytia hemisphaerica|type=CDS|length=6699bp|location=Sequence derived from alignment at sc0000001:1071776..1076558+ (Clytia hemisphaerica)
ACCAATGTCAACCAATCACTGACAAtTCCACCCAAAATCCTTAGCATCAT
CAACACAACTGAAGTCACCCAGGGCGATAGTATTATCTTACAATGTAAAA
CCCAGGGCAGTCCTGAACCAATCACAGTTTGGACATTTGGAGAGAATTTC
ACCACCATCGCAATAGGATACGGAAGATCCAAGATGTTACCAGGAGGCGA
TCTGATGATCACTGAAGCTCAAATGCAAGACACTGGCAAGTACACGTGCA
TCTCTGGCAACGTTGGAGGTACAGACACAGCCTCTGGTTATCTCTTGGTC
AATGACGTTGATGAATGTGTGACGGGCAAACATAATTGCTCACATCTCTG
TACAAACACCTATGGTGGTTTCGAATGCTTTTGTTATCAAGGCTACACCT
TATTGGCTGATCAAAGCACGTGCCAAGATGTGAACGAATGTGAGATGTTC
AATGATTGTGATCACTTCTGTTGGAACACTGAGGGAAGTTACACGTGTGG
CTGTCGTCATGGTTACCAGCTGCAAGAAGATAACAAAATATGTAAAGACA
TTGATGAATGTACCATGGGAAGTCATCAATGTGAACATAACTGCACTAAC
ACCCAGGGCTCATATTTTTGTTCGTGTAACCCAGGGTTCAATTTGTCATC
AATTGATCACGTGACCTGTAAACGCAACgaagaactaataaacaaaaCAA
TACCTGTTCACCATGGCAACCATACCTTGACAACCAGAAACAACATTCAT
CCGCACATGCGCAGTGGGAGAACAACACGTCGTGTTTTACATCTAATCAC
TATCATAACACTTGTGGTGACGTTGATTCTTGTCTCGCTTGCCTTGTACT
TAATGTGGAGAAATTATAAGAAAAGATGGAGGATGAAAGAGGCAACATCG
AATATGAATGAACCACCGgtCAGATCAAGATGTTCAGCAatgttttcttg
gaaataaACCAATGTCAACCAATCACTGACAAtTCCACCCAAAATCCTTA
GCATCATCAACACAACTGAAGTCACCCAGGGCGATAGTATTATCTTACAA
TGTAAAACCCAGGGCAGTCCTGAACCAATCACAGTTTGGACATTTGGAGA
GAATTTCACCACCATCGCAATAGGATACGGAAGATCCAAGATGTTACCAG
GAGGCGATCTGATGATCACTGAAGCTCAAATGCAAGACACTGGCAAGTAC
ACGTGCATCTCTGGCAACGTTGGAGGTACAGACACAGCCTCTGGTTATCT
CTTGGTCAATGACGTTGATGAATGTGTGACGGGCAAACATAATTGCTCAC
ATCTCTGTACAAACACCTATGGTGGTTTCGAATGCTTTTGTTATCAAGGC
TACACCTTATTGGCTGATCAAAGCACGTGCCAAGATGTGAACGAATGTGA
GATGTTCAATGATTGTGATCACTTCTGTTGGAACACTGAGGGAAGTTACA
CGTGTGGCTGTCGTCATGGTTACCAGCTGCAAGAAGATAACAAAATATGT
AAAGACATTGATGAATGTACCATGGGAAGTCATCAATGTGAACATAACTG
CACTAACACCCAGGGCTCATATTTTTGTTCGTGTAACCCAGGGTTCAATT
TGTCATCAATTGATCACGTGACCTGTAAACGCAACgaagaactaataaac
aaaaCAATACCTGTTCACCATGGCAACCATACCTTGACAACCAGAAACAA
CATTCATCCGCACATGCGCAGTGGGAGAACAACACGTCGTGTTTTACATC
TAATCACTATCATAACACTTGTGGTGACGTTGATTCTTGTCTCGCTTGCC
TTGTACTTAATGTGGAGAAATTATAAGAAAAGATGGAGGATGAAAGAGGC
AACATCGAATATGAATGAACCACCGgtCAGATCAAGATGTTCAGCAatgt
tttcttggaaataaACCAATGTCAACCAATCACTGACAAtTCCACCCAAA
ATCCTTAGCATCATCAACACAACTGAAGTCACCCAGGGCGATAGTATTAT
CTTACAATGTAAAACCCAGGGCAGTCCTGAACCAATCACAGTTTGGACAT
TTGGAGAGAATTTCACCACCATCGCAATAGGATACGGAAGATCCAAGATG
TTACCAGGAGGCGATCTGATGATCACTGAAGCTCAAATGCAAGACACTGG
CAAGTACACGTGCATCTCTGGCAACGTTGGAGGTACAGACACAGCCTCTG
GTTATCTCTTGGTCAATGACGTTGATGAATGTGTGACGGGCAAACATAAT
TGCTCACATCTCTGTACAAACACCTATGGTGGTTTCGAATGCTTTTGTTA
TCAAGGCTACACCTTATTGGCTGATCAAAGCACGTGCCAAGATGTGAACG
AATGTGAGATGTTCAATGATTGTGATCACTTCTGTTGGAACACTGAGGGA
AGTTACACGTGTGGCTGTCGTCATGGTTACCAGCTGCAAGAAGATAACAA
AATATGTAAAGACATTGATGAATGTACCATGGGAAGTCATCAATGTGAAC
ATAACTGCACTAACACCCAGGGCTCATATTTTTGTTCGTGTAACCCAGGG
TTCAATTTGTCATCAATTGATCACGTGACCTGTAAACGCAACgaagaact
aataaacaaaaCAATACCTGTTCACCATGGCAACCATACCTTGACAACCA
GAAACAACATTCATCCGCACATGCGCAGTGGGAGAACAACACGTCGTGTT
TTACATCTAATCACTATCATAACACTTGTGGTGACGTTGATTCTTGTCTC
GCTTGCCTTGTACTTAATGTGGAGAAATTATAAGAAAAGATGGAGGATGA
AAGAGGCAACATCGAATATGAATGAACCACCGgtCAGATCAAGATGTTCA
GCAatgttttcttggaaataaACCAATGTCAACCAATCACTGACAAtTCC
ACCCAAAATCCTTAGCATCATCAACACAACTGAAGTCACCCAGGGCGATA
GTATTATCTTACAATGTAAAACCCAGGGCAGTCCTGAACCAATCACAGTT
TGGACATTTGGAGAGAATTTCACCACCATCGCAATAGGATACGGAAGATC
CAAGATGTTACCAGGAGGCGATCTGATGATCACTGAAGCTCAAATGCAAG
ACACTGGCAAGTACACGTGCATCTCTGGCAACGTTGGAGGTACAGACACA
GCCTCTGGTTATCTCTTGGTCAATGACGTTGATGAATGTGTGACGGGCAA
ACATAATTGCTCACATCTCTGTACAAACACCTATGGTGGTTTCGAATGCT
TTTGTTATCAAGGCTACACCTTATTGGCTGATCAAAGCACGTGCCAAGAT
GTGAACGAATGTGAGATGTTCAATGATTGTGATCACTTCTGTTGGAACAC
TGAGGGAAGTTACACGTGTGGCTGTCGTCATGGTTACCAGCTGCAAGAAG
ATAACAAAATATGTAAAGACATTGATGAATGTACCATGGGAAGTCATCAA
TGTGAACATAACTGCACTAACACCCAGGGCTCATATTTTTGTTCGTGTAA
CCCAGGGTTCAATTTGTCATCAATTGATCACGTGACCTGTAAACGCAACg
aagaactaataaacaaaaCAATACCTGTTCACCATGGCAACCATACCTTG
ACAACCAGAAACAACATTCATCCGCACATGCGCAGTGGGAGAACAACACG
TCGTGTTTTACATCTAATCACTATCATAACACTTGTGGTGACGTTGATTC
TTGTCTCGCTTGCCTTGTACTTAATGTGGAGAAATTATAAGAAAAGATGG
AGGATGAAAGAGGCAACATCGAATATGAATGAACCACCGgtCAGATCAAG
ATGTTCAGCAatgttttcttggaaataaACCAATGTCAACCAATCACTGA
CAAtTCCACCCAAAATCCTTAGCATCATCAACACAACTGAAGTCACCCAG
GGCGATAGTATTATCTTACAATGTAAAACCCAGGGCAGTCCTGAACCAAT
CACAGTTTGGACATTTGGAGAGAATTTCACCACCATCGCAATAGGATACG
GAAGATCCAAGATGTTACCAGGAGGCGATCTGATGATCACTGAAGCTCAA
ATGCAAGACACTGGCAAGTACACGTGCATCTCTGGCAACGTTGGAGGTAC
AGACACAGCCTCTGGTTATCTCTTGGTCAATGACGTTGATGAATGTGTGA
CGGGCAAACATAATTGCTCACATCTCTGTACAAACACCTATGGTGGTTTC
GAATGCTTTTGTTATCAAGGCTACACCTTATTGGCTGATCAAAGCACGTG
CCAAGATGTGAACGAATGTGAGATGTTCAATGATTGTGATCACTTCTGTT
GGAACACTGAGGGAAGTTACACGTGTGGCTGTCGTCATGGTTACCAGCTG
CAAGAAGATAACAAAATATGTAAAGACATTGATGAATGTACCATGGGAAG
TCATCAATGTGAACATAACTGCACTAACACCCAGGGCTCATATTTTTGTT
CGTGTAACCCAGGGTTCAATTTGTCATCAATTGATCACGTGACCTGTAAA
CGCAACgaagaactaataaacaaaaCAATACCTGTTCACCATGGCAACCA
TACCTTGACAACCAGAAACAACATTCATCCGCACATGCGCAGTGGGAGAA
CAACACGTCGTGTTTTACATCTAATCACTATCATAACACTTGTGGTGACG
TTGATTCTTGTCTCGCTTGCCTTGTACTTAATGTGGAGAAATTATAAGAA
AAGATGGAGGATGAAAGAGGCAACATCGAATATGAATGAACCACCGgtCA
GATCAAGATGTTCAGCAatgttttcttggaaataaACCAATGTCAACCAA
TCACTGACAAtTCCACCCAAAATCCTTAGCATCATCAACACAACTGAAGT
CACCCAGGGCGATAGTATTATCTTACAATGTAAAACCCAGGGCAGTCCTG
AACCAATCACAGTTTGGACATTTGGAGAGAATTTCACCACCATCGCAATA
GGATACGGAAGATCCAAGATGTTACCAGGAGGCGATCTGATGATCACTGA
AGCTCAAATGCAAGACACTGGCAAGTACACGTGCATCTCTGGCAACGTTG
GAGGTACAGACACAGCCTCTGGTTATCTCTTGGTCAATGACGTTGATGAA
TGTGTGACGGGCAAACATAATTGCTCACATCTCTGTACAAACACCTATGG
TGGTTTCGAATGCTTTTGTTATCAAGGCTACACCTTATTGGCTGATCAAA
GCACGTGCCAAGATGTGAACGAATGTGAGATGTTCAATGATTGTGATCAC
TTCTGTTGGAACACTGAGGGAAGTTACACGTGTGGCTGTCGTCATGGTTA
CCAGCTGCAAGAAGATAACAAAATATGTAAAGACATTGATGAATGTACCA
TGGGAAGTCATCAATGTGAACATAACTGCACTAACACCCAGGGCTCATAT
TTTTGTTCGTGTAACCCAGGGTTCAATTTGTCATCAATTGATCACGTGAC
CTGTAAACGCAACgaagaactaataaacaaaaCAATACCTGTTCACCATG
GCAACCATACCTTGACAACCAGAAACAACATTCATCCGCACATGCGCAGT
GGGAGAACAACACGTCGTGTTTTACATCTAATCACTATCATAACACTTGT
GGTGACGTTGATTCTTGTCTCGCTTGCCTTGTACTTAATGTGGAGAAATT
ATAAGAAAAGATGGAGGATGAAAGAGGCAACATCGAATATGAATGAACCA
CCGgtCAGATCAAGATGTTCAGCAatgttttcttggaaataaACCAATGT
CAACCAATCACTGACAAtTCCACCCAAAATCCTTAGCATCATCAACACAA
CTGAAGTCACCCAGGGCGATAGTATTATCTTACAATGTAAAACCCAGGGC
AGTCCTGAACCAATCACAGTTTGGACATTTGGAGAGAATTTCACCACCAT
CGCAATAGGATACGGAAGATCCAAGATGTTACCAGGAGGCGATCTGATGA
TCACTGAAGCTCAAATGCAAGACACTGGCAAGTACACGTGCATCTCTGGC
AACGTTGGAGGTACAGACACAGCCTCTGGTTATCTCTTGGTCAATGACGT
TGATGAATGTGTGACGGGCAAACATAATTGCTCACATCTCTGTACAAACA
CCTATGGTGGTTTCGAATGCTTTTGTTATCAAGGCTACACCTTATTGGCT
GATCAAAGCACGTGCCAAGATGTGAACGAATGTGAGATGTTCAATGATTG
TGATCACTTCTGTTGGAACACTGAGGGAAGTTACACGTGTGGCTGTCGTC
ATGGTTACCAGCTGCAAGAAGATAACAAAATATGTAAAGACATTGATGAA
TGTACCATGGGAAGTCATCAATGTGAACATAACTGCACTAACACCCAGGG
CTCATATTTTTGTTCGTGTAACCCAGGGTTCAATTTGTCATCAATTGATC
ACGTGACCTGTAAACGCAACgaagaactaataaacaaaaCAATACCTGTT
CACCATGGCAACCATACCTTGACAACCAGAAACAACATTCATCCGCACAT
GCGCAGTGGGAGAACAACACGTCGTGTTTTACATCTAATCACTATCATAA
CACTTGTGGTGACGTTGATTCTTGTCTCGCTTGCCTTGTACTTAATGTGG
AGAAATTATAAGAAAAGATGGAGGATGAAAGAGGCAACATCGAATATGAA
TGAACCACCGgtCAGATCAAGATGTTCAGCAatgttttcttggaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000027XLOC_000027Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000042-proteinTCONS_00000042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000042-exon-sc0000001-1491911889:1071776..1071802TCONS_00000042-exon-sc0000001-1491911889:1071776..1071802Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1071776..1071802TCONS_00000042-exon-sc0000001-1510915933:1071776..1071802Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1071776..1071802TCONS_00000042-exon-sc0000001-1575043694:1071776..1071802Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1491911889:1072179..1072388TCONS_00000042-exon-sc0000001-1491911889:1072179..1072388Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1072179..1072388TCONS_00000042-exon-sc0000001-1510915933:1072179..1072388Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1072179..1072388TCONS_00000042-exon-sc0000001-1575043694:1072179..1072388Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1491911889:1072755..1072946TCONS_00000042-exon-sc0000001-1491911889:1072755..1072946Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1072755..1072946TCONS_00000042-exon-sc0000001-1510915933:1072755..1072946Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1072755..1072946TCONS_00000042-exon-sc0000001-1575043694:1072755..1072946Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1491911889:1073268..1073387TCONS_00000042-exon-sc0000001-1491911889:1073268..1073387Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1073268..1073387TCONS_00000042-exon-sc0000001-1510915933:1073268..1073387Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1073268..1073387TCONS_00000042-exon-sc0000001-1575043694:1073268..1073387Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1491911889:1075084..1075209TCONS_00000042-exon-sc0000001-1491911889:1075084..1075209Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1075084..1075209TCONS_00000042-exon-sc0000001-1510915933:1075084..1075209Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1075084..1075209TCONS_00000042-exon-sc0000001-1575043694:1075084..1075209Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1491911889:1075688..1075932TCONS_00000042-exon-sc0000001-1491911889:1075688..1075932Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1075688..1075932TCONS_00000042-exon-sc0000001-1510915933:1075688..1075932Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1075688..1075932TCONS_00000042-exon-sc0000001-1575043694:1075688..1075932Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1491911889:1076327..1076558TCONS_00000042-exon-sc0000001-1491911889:1076327..1076558Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1510915933:1076327..1076558TCONS_00000042-exon-sc0000001-1510915933:1076327..1076558Clytia hemisphaericaexon
TCONS_00000042-exon-sc0000001-1575043694:1076327..1076558TCONS_00000042-exon-sc0000001-1575043694:1076327..1076558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1071776..1076558 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.379712	0	5.80431	7.83386	1.89821	3.28412	3.59768	2.61754	11.1454	9.52925	7.60627	20.4249	11.8621	11.4871	0.0799865	0.134319	7.34452	7.26631	6.01153	6.18673	10.7363	8.3639	1.59037	0.605611	0.0835154	0.212723
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR013783Ig-like_fold
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR018097EGF_Ca-bd_CS
IPR013032EGF-like_CS
IPR007110Ig-like_dom
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00000042 vs. Swiss-Prot (Human)
Match: FBLN5 (Fibulin-5 OS=Homo sapiens GN=FBLN5 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.116e-28
Identity = 69/168 (41.07%), Postives = 85/168 (50.60%), Query Frame = 3 
Query:  237 GKYTCISGNVGGTDTASGYLLVN----DVDECVTGKHNCSHLCTNTYGGFECFCYQGYTLLADQSTCQDVNECEMFNDCDHFCWNTEGSYTCGCRHGYQLQEDNKICKDIDECTMGSHQCEHNCTNTQGSYFCSCNPGFNLSSIDHVTCKRNEELINKTIPVHHGNHT 728
            G YTC            GY L+     D+DEC  G   C  LC N  G + C C  G+TL  D  +CQDVNEC   N C   C NT GS+ C C  GY+L+ED   C D+DEC+     C+H C N  G+YFCSC PG+ L   D+ +C+   E         H NHT
Sbjct:  149 GGYTC--------SCTDGYWLLEGQCLDIDECRYGY--CQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEEDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPPGYILLD-DNRSCQDINE-------CEHRNHT 298

HSP 2 Score: 83.9593 bits (206), Expect = 1.533e-17
Identity = 55/133 (41.35%), Postives = 72/133 (54.14%), Query Frame = 3 
Query:  237 GKYTCISGNVGGTDTASGYLLVNDVDECVTGKHNCSHLCTNTYGGFECFCYQGYTLLADQSTCQDVNECEMFND--CDHFCWNTEGSYTCGCRHGYQLQEDNKICKDIDECTMGSHQC--EHNCTNTQGSYFC 623
            G Y+C + N G T    G     DV+EC T ++ C   C NTYG F C C  GY L  D   C D++EC  F++  C H C N  G+Y C C  GY L +DN+ C+DI+EC   +H C  +  C N QG + C
Sbjct:  186 GSYSC-TCNPGFTLNEDG-RSCQDVNECAT-ENPCVQTCVNTYGSFICRCDPGYELEEDGVHCSDMDECS-FSEFLCQHECVNQPGTYFCSCPPGYILLDDNRSCQDINECEHRNHTCNLQQTCYNLQGGFKC 314
The following BLAST results are available for this feature:
BLAST of TCONS_00000042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBLN54.116e-2841.07Fibulin-5 OS=Homo sapiens GN=FBLN5 PE=1 SV=1[more]
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