TCONS_00000041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000041
Unique NameTCONS_00000041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000041 ID=TCONS_00000041|Name=TCONS_00000041|organism=Clytia hemisphaerica|type=transcript|length=5437bp
aaaaagaaaagctttGAGTTATGCtgaagtcaaaattttgtagaaaattC
GACCAAGGAGATAGGTCAGAGTTTAAAAATTCAGAAAGCTTGGTAACCTG
AAACatgtgattttttgtttttatgtacTAAATGTAAAGGGCTTATACCT
TAAGTACCTTATTAAAGATATTCCAATGACGTTTTAGTAACTGGATTAAT
AATTGCATCTTAGATTTCAGAAGAGTAGAGTTTGAGATATAATTATTACC
AAAGATATTGCATGACTATTTTATCACTGggtcttgaaaaagaaaaccca
TACTGGCCGTTACATATTTCTTGATGAAAAAACGATTCAAAAAGTGTGCT
GGGATTCAACCAAAGTGTGACCATTTATTTCATACTTGTGTTGTTGCTAT
GGTTACTTGAAGcaaCAAGTGGATCATTGATTCACTACGGGTTCGAGCAA
CATGAACTAAACAATGTGGCAGATGATAGTGGCAATCATATCAATGCTTT
GTTAATGAATGGAGCACGTGTGACCAAGCAAGACGCAAAATGTGGCGCTG
CCCTTGATTTAAACGGTGGAGAGCTTATTATCCGTGGTCAAACTCTATCA
AATAGAGGTATTGATGCCATAACTATAGCCATGTGGGTGAAAGTAAGAAA
CGAGAAAAGAGATTTATCGCTTTTTAACGTAGACAGTAAGACCTTGGATG
GCTCAGGTGCTGTTTTGGCACtcgaaattaaagatggtagacTACATTGG
AGCCACGTGGATGAGACAGGGGAAGTTGTTTTTCATTTGGAGACTGTACA
GAAATCGACTATGCCTGTAGGGCTTTGGTCACACGTGGCTGCTACTTATG
ACCCCGCAAAAGGCTTCGCAAGGTTGTATATAGATTCACAATTCATCAAA
GAAGTACAAGGGAATGGTAAAATGTCATCACAATTTAATGGGAAGATTTC
GATTGGTCGAGACGGTTCGTTACCAGGCCTCGTTGACGAGTTCTATTTCT
TTGAGAAAGCACTCTCATTCAACGATGTCAAAGATCTATCGGAGCTTTGT
AACGTTGGCGGTGATTATCCGATCCCGATGGAAAATGCTGCCGACTTGCA
ACGATTATCGACCGATAAAAACCGCAAAACGGAAGTCGGGAACCGACATT
CAAAAGTCGCTTTTCACGAAGATGACACCGACGCTACTCGGGATAATTGT
CGTAAGCAGATTGCATTCCATAATACCGACTTACGTGGCAGCGAAACGTC
CGGCNTAAAACAGAAGTCGGGAACCGACATTCAAAAGTCGCTTTTCACGA
AGATGACACCGACACTACTCGGGATAATTGTCGTAAGCAGATTGCATTTC
ATAATACCGACTTACGTGGCAGCGAAACGTCCGGCGTTTTTACCGACGTC
GGTGACGTGACGTCTTTAGACGAATGTGTCGAAAGATGCTGTGCGTCAAA
AGAATGTCATATAGCGTACATGAAGAAACGACGCTGTTTTACTGTCGTTT
GTCATTTTCCGTCGTTATGCCAACCGGTCAAAGTTGGCCGTTCATTGGTT
CATGTGGCGTTCGTGAATAGAAATGGTGAATCCGTTTACATTAAAGATGA
GACACCAAACCAATTAGACACATCAAATGAAAATGGAGGTGACGTCAGCC
TTATTCACCATCTTACCACAtcaaccaccaccaccaccaccagcaCTGCT
GCACCAACCAATCAGCTTCGACGTTGTTTGCAAAGTAACGTGTACTATGG
AGTGGCTTTGAAAGGAGGATGGACTTCTGGCAAATTCACTGATAAAGGTA
TTGTGCCAGATCTGAAAACATGTGTCAATCATTGTTGCAATGAACCGGAT
TGCGATTTAGTCATGCTGTTGAGACAGAAGTGTTTCACCATACACTGCTA
CAGTCTGGATGACTGCCAGACCACACCCAATGGCCACGCCCATATCGCAT
ATGTGGCTAGAGATGGCTACCATTTAAATCCGACCACAAGACCACCAACA
CATACTCGCCCAAAACCACGTATCTCAACTGAAGAACCTCACTCAGCGAA
TGGACCAACACGAAACGGACCACCAGTAAGCAACCACGCAAAGTATCCAA
GCATGAGCGGAAAGAGGCCTGATATGGTCCTGCATtacacttttgaaaaa
cttgatgAAGATCTGGTTATTGATGAATCGAGTTTTAACAACAATGGGAA
ATTACTTGAAGGTGCCAGCGTTTCACCAGCCGGCGGTATCCGTGGTAACG
GTGTCTCATTCTTCGGTGGTGCAATCCTATTGGATAGTCAGACGTTCAAA
CCCAAACCTCTTAAAGCCATTACTGTTGCATTATGGGTTAAACTACAAGA
CGTGGCAGGACGGAATACGTTGTTTGCAACGATGGGACAGAACGAACGAA
ACGGGTTCCGTCTAACCGTCATTGAGGGGAAGATTAGTTGGCTTTACGTT
ATTGACGGACATGAAAAATCGTTCCAGCTACGTACAGGACCTATATTAAC
ACGTAATAAGTGGTTTCAGATTACAGCCACGGCTGATGGAGACGTCGGGG
AAGCAAAGGTTTACGTCAACGGTGGCATACAATCAATAGGTGTCACACGC
GGTCAATTTTCAACCGATTGGGGCGTGAAGGCGGGATTCGGAGTACATGA
GGGCGGCCATCCTTTACATGGAATCATGGACGATGTGTATATATTCTCAT
CAGCTTTATCTAAAGACGAAGTGTTAAACTACATCAAGAAATTCGATGAA
ATGCGTTTCCTAATGACTCCGGCACCTGTGACCGTCCCCGTGACTAGACG
ACCGACGCCAACGAGCCGAAAAATGACAATCAAGATCAAGACGTTCAAAC
CGTCTACAACAACGACGACTACAACAACTCCACCGACCACCACAACGACC
AGTACAACAACAACTACGATACAACCAACAACATTCACAACACTGAGCAC
CAAAACAGTCACAAAACCATTATCTTTACAACAAAACAGATGCAAGTTCG
GTAACGTTTACGAATACACAGACCTCAAAGGAGGACTCGGTGCTGGTAAT
TTCCTAGATCGTGGCATCACACCAAACGTACAAGTTTGTATGGAGCTCTG
TTGCGCACACACTACTTGCGATCTTGCGTATGTGGTGTCTTCTAGATGTT
ACTTGGTGGAATGTTATACAACAGAGTTGTGCTCGGTTGTTCCCAAAGGA
CTTGGGTCAGTTTCGCCTGTCATTGGTATGATCATAAGACCAGATGGTCC
GAAAATTCCACAACTGGGCGACAATGTTGTTCTACCACCAACACGCCCAT
GGACCACCAACGAACCAGGCGTTACACCCGACTCTTTGAAAAACATGAAA
GACCTCAAATTGGCGTTAGAAGATACATTAAACCCATTCAAACATAAAAA
GAAGACACCAAAGaaatgtattttcaaaaagacattGTCCAAAACTACCT
TCGTGGGTGGTTTAAAAGCAGGGAATTTCACCAATAAAGGCACTGTGACG
TCAATGAGTGTCTGTAAAGCAATGTGTTGTCAGTCTGACAGATGTGACGT
AGCAGTGATGATGAAGAACGGTTGTTTCTTATTGACATGCAAGAGTGCGG
AACTTTGCAAGCCAAGAAAGGCGCAAACAGAAAGTTTCACATTGAAATTG
GCATATCGAGACAAGGTTAAAGAAATGGAGGCAATCGAGACAGAGGAGGA
TAATGACGAAGATGACGAAACGGAAGATGAAGATTCTCACACGTCATCAA
CGTCCACTGCACTTCCACTAAATCCTAAGATATCACCAACACTGCCCGTC
CCAGTTCTCTTACAAGAGTCCTTAACCGACAATGGAAAACTACAGAAACC
TATCAGTGATACCATACCCCCGGTTTTACGACCACAAAACGGGGTAACTT
CATGGTGTTCTCCATCATTCATATTGGCCGGTGTTGAATTGAACGGGGGT
ATTCAATCGGGACCATCCAAAATTCTTGGTAATGTCTCTACAATACAAGA
ATGTGTTAGCGAATGTTGTCGTGTTCCCGATTGTACTGTTGCGTATACGG
AAGGCAAGACGTGTTACGCTGTACTGTGTTTGAATCAAAATATATGTCAA
GCGCGCATTTCGACGCCGTCAAAAAGCCTCGGTTACGTCGTTAGAAACGG
TTGGTCGCTTTTCCCGTCAGAACAAAACGCCTTTAAAGGAGCTGCTTTCC
TAAACACTCAACGGCCTGAAATCATCCCAGATACGACCCTACAaacaacg
acaacgaccactTCTACTCCAACAACTACAACAAGTACCGTGACAACGAC
CCTTGCAACGACCAACTTAGCAACCACACCCCTAACAACGACAACAGAAA
TACCTAAAAACGTCAGTATTGACATTTCCTCAATAACGCCAGAATCAact
gtcaataaaactgaaacATGCCGCTCTAACGGAACTCTAACCGACCACCG
TTTCGTTGCCGGAATGAAAGCCGGCATTTTTACCGACCACGGTGAACTTT
CTGATGTCGATGATATACCGTCGTGTGTCAAATACTGCTGTCTAGATAAA
CTGTGCGACGTCGCTTACATGGTCGGGAGACGTTGCTACACACTTCAATG
CTTTAGTCGTCAAACGTGCCAGACGTTTCCTGCTCCAAATTTCTTTCTAA
ACCCGGTCATTGCATTCGTGGTCCGAACGAAGCCACCAAAAGTTGACATC
ATCAGTGTTGATTTCATTAAACATAACTATACTGTACCACtaacaaattc
aacttttagAAATTCTAGTATGACAGACAAACCCAGCATTAATGTTAAAT
TGAGTAAGAAAACAATGGACAATTCAAATCAGCCGTCAAAAGAAAATGAC
GAATTCGTTGAAGATCAAGTTGAATCAGGATCAGGTTCCGGAATAGACAG
TCCTGGTTTTACACGTGGAAACGTACCAGATGCGGTATTGGACCAGTTCG
AGAAAACGCAAGAACGATTGCCACAACCGACAGAAAGATACTATTTCCCT
CTGAGCGATGTGGATTCAAATGTGATCAAATCATTGAGTGATGATAAAGA
TTTCACTGAGTGTAGTTCAACAAAATACggttgtgagcatttttgtatCA
CCCTCCTACACGGAGGTCCAAGATGTATGTGTAGGAACGGTTATCAGCTA
GCATTGGACGGCCAACATTGTCTCTACGAAGGAGAGTGTGAACCAAAAGC
ACATGGTTGTGATCAGGCGTGTAAATTTGTGACTGATGGCTTTCAATGCC
AGTGCAGAAGTGGTTACGTATTGAAGAAGACGGCATATAAAAGCTCATGC
CAAGATTTAGACGAGTGTGCAATGGACATGCATAGTTGTAGTCATGGTTG
TTTAAACACACCTGGTAGTTATGTTTGTCAGTGTCCTGGTGGTTACCAAT
TGGGTACAGATCGGTTGACTTGTCAGCTTATCATCGG
Run BLAST on NCBI

transcript from alignment at sc0000001:1056169..1070141+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000041 ID=TCONS_00000041|Name=TCONS_00000041|organism=Clytia hemisphaerica|type=transcript|length=13973bp|location=Sequence derived from alignment at sc0000001:1056169..1070141+ (Clytia hemisphaerica)
aaaaagaaaagctttGAGTTATGCtgaagtcaaaattttgtagaaaattC
GACCAAGGAGATAGGTCAGAGTTTAAAAATTCAGAAAGCTTGGTAACCTG
AAACatgtgattttttgtttttatgtacTAAATGTAAAGGGCTTATACCT
TAAGTACCTTATTAAAGATATTCCAATGACGTTTTAGTAACTGGATTAAT
AATTGCATCTTAGATTTCAGAAGAGTAGAGTTTGAGATATAATTATTACC
AAAGATATTGCATGACTATTTTATCACTGggtcttgaaaaagaaaaccca
TACTGGCCGTTACATATTTCTTGATGAAAAAACGATTCAAAAAGTGTGCT
GGGATTCAACCAAAGTGTGACCATTTATTTCATACTTGTGTTGTTGCTAT
GGTTACTTGAAGGTAAGTACGATTTGAGAGTAGGGTTAAGTTTGCGGATG
TACTAGGTTTTGAGTCGAAACTTTAACTATNAATTTGAGAGTCGGGTTAA
GTTTGCGGATGTACTAGGTTTTGAGTCGAAACTTTAACTATAATTTTCCA
AGATTCTTCGAGGATATTTAATGATGAAAAGCCTACAAAATCATGAATAA
AAGACTAGAATAGGCatctaaattttctttcaagagtGTCTAAAATTGTA
TACATTTTCACTGTGAAAAGATTGATCGGCGTCTCAGAATGGTAGATGGA
GATGTGTAAAGTCCCAGCCAATTCCATAAATATAGTGTATGAAGGAGGTA
TATGTGGGACGTAGTGGGACGCTCTAGAGTGttccacttgagcgtcccac
tatCGTCCCACTTAGCGTCCCATCGTCCCACGTCCCTGCAAAAtctatga
gggagtgcagacgtttatgacatattcattatcttttgatacaacaaaga
caataattacagtgtcgtaaaaaccgctcccGTCCATAcatttgcagggt
atctcgctacgcctatgatcgtcccacgtcccacttatCCAGTATGCAAA
ATATAGTTTATGAAGGAGGTCTCCCCCCATCAATTCCTGTCTTTATTGTG
TAGGTTTTAAGTGACAAAGAGAGTACTCCGTTCAAACCAGTTTTAGCAGG
GAACCTTTTAAAAGTTCTTTTGTAATTACCAAGATAGCATAACATTGTAA
GAAACCGATTCAATCTGTTTGTTACCGTGTTGTGCTCATCTTGAAATTAC
aaggtgaaaaattttttggaaccaatatacgttttttatataagaacata
caaaatttttgaagccttcggatatttataactttttgagttttaagcct
aaaaatgcctTATTTTCGCCATGTGAGTATATTTTTGGTCCGATTtcctt
aagaaattgggtgttttagagtccgcaaagccttaagggctctgaccata
gtccaaaaattaattttggtatttgaacataaaagttatatttcaggttc
cttaacacttttaacaaagaattgcNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaatgacgttatgaact
ttaaaaagatgttaataatatgttgcatcaccctcttttacaaaaagtgc
ttagttttaatgggtaattaaattttttgtttcaaaattcctttacactg
tctgcaaagaattgaactattttaaattttgcggaaaatttttctaaaaa
gatgtgtcaaaagttatgtcgttttttttaagcaaaatccagatgaaaaa
ttgatgaaaaaccactattttgaagatttcgagacaaagaagcatttaca
aaaattttccgcaaaaatttttattgttcggtaaaagatacaccatgtac
tgcgaaaaaattttcaaaatgttttttcttcgccgaaactaagctcttca
aagttgaaatactcttcctcgcaaaagtcttcattttcttcttcatcaaa
ttttttcaatgcaatttttgaattttcagattcaggaatagtttgtctaa
cagaaaatgtataacatgccatagttttgttggttacatcagtcagaaaa
cacattttaaacacggcaattatgaaaaattcactatggtcagagccctt
aaaataatcttaacttgttctcatatagtttgttcttacaaaagaaaacg
tgtaagttttttttctacactTGTGAGATATAATGAATTGAAGATTTTTA
TAGAAAGCATAACATTGTAAGAAGCCTTTCACCGGCTTTTTACGCTGTTA
CGCTTTCTGGGAGACTCTTGCTAACGAAAAAGGTCTCCAAAACCTGGCAT
AATTGAACTTTTTCTATCTTTGAAAAATAAGGTTTGAGATTTTTCTAGAA
AGCATAACATTGTAAGAAGCCTTTCACCGGCTTTTTACGCTGTTACGCTT
TCTTGAATTTTCTTGCTTATCAACAAAACTTTATTGGAAATAGTTTGAAT
TGTATCGTTGATAGGAAACATGTAAGTGTTGCCGTGGAAATATTGACATT
TTTTGTAACATGTAGAACAGTACATCTCTATCGACCCTGATTATACTGGT
CTTCAAGTAGCACTTCTTCACCAATGAGTTAAAGAAAGTATTAGCTCAGT
CAACATGGAAATCCATTCCTTTCACATTTTTGTATCATTTCGGTCCACAC
ATTACTGCTCAATTCTATTCcgaaacaaagaaaagacattCTAATGGATG
GTTAGAATCGACGAAAAACTTTTAGCCAATATCTTTACTTAGTTTCAGCG
TAGAAGATGGAGTGAAATACGTGAGCGTGGCCTCTATCAAACAAGATGTA
ATAGTTACCGGACAGATGCGAGAAAATCCGGAACAAGTagaatatttcca
tatttcgagcaaatgtctgataactggtttatcagtaatccaaaaaatgc
actttttgtgtagGAAAAAAGCGCagatacaagatatattgtactctttt
taacggTTGGCGTGAAAACATTAGCTATTTCTTTCACTCAATACTTTGAA
CAACTTTTCAATCCATCTcatctttcttttcaatttttaatattttagca
aCAAGTGGATCATTGATTCACTACGGGTTCGAGCAACATGAACTAAACAA
TGTGGCAGATGATAGTGGCAATCATATCAATGCTTTGTTAATGAATGGAG
CACGTGTGACCAAGCAAGACGCAAAATGTGGCGCTGCCCTTGATTTAAAC
GGTGGAGAGCTTATTATCCGTGGTCAAACTCTATCAAATAGAGGTATTGA
TGCCATAACTATAGCCATGTGGGTGAAAGTAAGAAACGAGAAAAGAGATT
TATCGCTTTTTAACGTAGACAGTAAGACCTTGGATGGCTCAGGTGCTGTT
TTGGCACtcgaaattaaagatggtagacTACATTGGAGCCACGTGGATGA
GACAGGGGAAGTTGTTTTTCATTTGGAGACTGTACAGAAATCGACTATGC
CTGTAGGGCTTTGGTCACACGTGGCTGCTACTTATGACCCCGCAAAAGGC
TTCGCAAGGTTGTATATAGATTCACAATTCATCAAAGAAGTACAAGGGAA
TGGTAAAATGTCATCACAATTTAATGGGAAGATTTCGATTGGTCGAGACG
GTTCGTTACCAGGCCTCNGTAAAATGTCATCACAATTCAATGGGAAGATT
TCGATTGGTCGAGACGGTTCGTTACCAGGCCTCGTTGACGAGTTCTATTT
CTTTGAGAAAGCACTCTCATTCAACGATGTCAAAGATCTATCGGAGCTTT
GTAACGTTGGCGGTGATTATCCGATCCCGATGGAAAATGCTGCCGACTTG
CAACGATTATCGACCGATAAAAACCGCAAAACGGAAGTCGGGAACCGACA
TTCAAAAGTCGCTTTTCACGAAGATGACACCGACGCTACTCGGGATAATT
GTCGTAAGCAGATTGCATTCCATAATACCGACTTACGTGGCAGCGAAACG
TCCGGCNTAAAACAGAAGTCGGGAACCGACATTCAAAAGTCGCTTTTCAC
GAAGATGACACCGACACTACTCGGGATAATTGTCGTAAGCAGATTGCATT
TCATAATACCGACTTACGTGGCAGCGAAACGTCCGGCGTTTTTACCGACG
TCGGTGACGTGACGTCTTTAGACGAATGTGTCGAAAGATGCTGTGCGTCA
AAAGAATGTCATATAGCGTACATGAAGAAACGACGCTGTTTTACTGTCGT
TTGTCATTTTCCGTCGTTATGCCAACCGGTCAAAGTTGGCCGTTCATTGG
TTCATGTGGCGTTCGTGAATAGAAATGGTGAATCCGTTTACATTAAAGGT
ACCCTGTAATTTAAATAAATACCATATTTGTCttcaaaggtttcaaaaaa
acaacagttgactctctctaattcgattttcaagggaacaAGAATTTTCG
TCGAATAAGAAGTACGGAGGGTTTTTTTATGCGACTTTCAAGCTGAGCGG
ACCAATGTTTTAActtgaattacagagagattcgaataaggAAAATTAGG
ATCAGAGAGAGAGTTGcctatatttcaaatttttagagcaCGGTCTGGAG
AGTTTAACCATCGCCGGTGCGATTCTTTTAAGACAATTACAAATACACCA
ATATCAACACTGCACTTATAAAGCACAAGCTTCATGTGATGATTGACGTC
TAACATCTATAATAATGAGATAGCCATATGATATTTTTTCGACCGTGGTC
TAAACACAAACTAAAGAAAAGGGAAGAGAATTCAGACCTATGTTAAAAAG
AGAATAAGAACATATCTTTAAGTTCCCACGTCATCTCCGTTAGCAATTAA
GATATTAACATAAAAGTTTCTAGCGGCCCTTGTCGCACAAACACATTCAA
CTATCAATTTTCAATACCTTTTCAGATGAGACACCAAACCAATTAGACAC
ATCAAATGAAAATGGAGGTGACGTCAGCCTTATTCACCATCTTACCACAt
caaccaccaccaccaccaccagcaCTGCTGCACCAACCAATCAGCTTCGA
CGTTGTTTGCAAAGTAACGTGTACTATGGAGTGGCTTTGAAAGGAGGATG
GACTTCTGGCAAATTCACTGATAAAGGTAATTTCTTTGTTCGTTTTGATA
GTTAAAGGCTAAAGGCTACCTTACCTTTCGAATTCATAAAGACACCCCCT
tcccacagacccactgggaacccttcccacagacccactgggaacccttt
ccactggaaaaattgtccagtatatcgtccccggtggaaaattatcctct
catttttgtccccacttaaaataaacaaataaaccaatcctcactgtaaa
CTATGATGCTTTTCTCCCATCCCCGCTGGATTTTCtgtcttgaaaacaaa
agaattgaaatccccgttcataaaaaatatcgaaatacaaatccccatcg
agtttcactccgtaatttttatccccactggctgaaaaaatcctccCGGG
TCTGTGAGGAGGAGGTGTATAAAGAAGTAAAACTAGCTTTATTGAATAAC
AGAGACACATTGGATAAAgagaaaataatcttttttagGTATCGTGAAAA
CATGTATCAATTATTGTTGTGATGAGCAAGATTGTGATTTAGTCAATTTC
TTTGTGGATATTTGCTTTAGGGTTGATACGTGTAAGAAATAACAAAACCT
TGCGACGACAGGAACAAACTAccatattttctttatttttccatgTAGGT
ATTGTGCCAGATCTGAAAACATGTGTCAATCATTGTTGCAATGAACCGGA
TTGCGATTTAGTCATGCTGTTGAGACAGAAGTGTTTCACCATACACTGCT
ACAGTCTGGATGACTGCCAGACCACACCCAATGGCCACGCCCATATCGCA
TATGTGGCTAGAGATGGCTACCATTTAAGTAAGTCCTCATTCTTTTATCC
CTTTAAGAACTGACTGTTTTGTAAAAGAAAAAGGGTGATATGACTATCTC
AACTTTTATTCAAAGATGAGACTCTTTTGGATATAAATGGAACCTTATGA
AAATAATCATCAAATGATAagtgaagaaaatcaacttgaaagcaaaatct
ttttgaatttcCTCAGGATGTTCTAAATCAAATTCTTCTTGCAAATGTTA
ATTACGACCTTGGAACTTAAAAGTTTTGACTGGTGTAGCATTTGTAGGAA
ATTTCTTCATGGCAGAGATTGGAAAAGCTAGATTTGATTGCACATTGTAT
GTTTTCTCGGTCATATTattcaaatctaaaattttcaatacaATTAATCA
GATCCGACCACAAGACCACCAACACATACTCGCCCAAAACCACGTATCTC
AACTGAAGAACCTCACTCAGCGAATGGACCAACACGAAACGGACCACCAG
TAAGCAACCACGCAAAGTATCCAAGCATGAGCGGAAAGAGGCCTGATATG
GTCCTGCATtacacttttgaaaaacttgatgAAGATCTGGTTATTGATGA
ATCGAGTTTTAACAACAATGGGAAATTACTTGAAGGTAAATACATATTCA
CGAGATTCAATCTGCCAACATTTCCCAGACATAACAATTTTAACAGCTAT
GAGTCGAAGGGgcgaatttttcaaattgattcAAAGTTACgctcaaatga
ataaaaagtgCTCAGGTGAAAAACTGCTAAAAGAATCACACCAAtaaaaa
ttgatccaaattttcaaaaacattttcattgtattttcagGTGCCAGCGT
TTCACCAGCCGGCGGTATCCGTGGTAACGGTGTCTCATTCTTCGGTGGTG
CAATCCTATTGGATAGTCAGACGTTCAAACCCAAACCTCTTAAAGCCATT
ACTGTTGCATTATGGGTTAAACTACAAGACGTGGCAGGACGGAATACGTT
GTTTGCAACGATGGGACAGAACGAACGAAACGGGTTCCGTCTAACCGTCA
TTGAGGGGAAGATTAGTTGGCTTTACGTTATTGACGGACATGAAAAATCG
TTCCAGCTACGTACAGGACCTATATTAACACGTAATAAGTGGTTTCAGAT
TACAGCCACGGCTGATGGAGACGTCGGGGAAGCAAAGGTTTACGTCAACG
GTGGCATACAATCAATAGGTGTCACACGCGGTCAATTTTCAACCGATTGG
GGCGTGAAGGCGGGATTCGGAGTACATGAGGGCGGCCATCCTTTACATGG
AATCATGGACGATGTGTATATATTCTCATCAGCTTTATCTAAAGACGAAG
TGTTAAACTACATCAAGAAATTCGATGAAATGCGTTTCCTAATGACTCCG
GCACCTGTGACCGTCCCCGTGACTAGACGACCGACGCCAACGAGCCGAAA
AATGACAATCAAGATCAAGACGTTCAAACCGTCTACAACAACGACGACTA
CAACAACTCCACCGACCACCACAACGACCAGTACAACAACAACTACGATA
CAACCAACAACATTCACAACACTGAGCACCAAAACAGTCACAAAACCATT
ATCTTTACAACAAAACAGATGCAAGTTCGGTAACGTTTACGAATACACAG
ACCTCAAAGGAGGACTCGGTGCTGGTAATTTCCTAGATCGTGGCATCACA
CCAAACGTACAAGTTTGTATGGAGCTCTGTTGCGCACACACTACTTGCGA
TCTTGCGTATGTGGTGTCTTCTAGATGTTACTTGGTGGAATGTTATACAA
CAGAGTTGTGCTCGGTTGTTCCCAAAGGACTTGGGTCAGTTTCGCCTGTC
ATTGGTATGATCATAAGACCAGATGGTCCGAAAAGTAAGGAACgcatttt
ttcatttgtttaggactaaaggcttggggacacaaaaagttttttttcgt
gttggtgcaatgcaacatgtaCCATTCCACCAACACAacacgctttctcg
tgtctccaccccatttttctttctaccaataaaagtgaaatctcactttt
gtccttgggacaatggagcaaaattgattcgaagtGTGTAACACATAAGA
AGTGCAATTTCTCCCAACTTGGTAGAAACTGACAACTGAAACTTACCATT
CTAGGCTCGCAATAATTTCTTGCGAAAGTAATtcaattttgccaattttc
aggTAAATTTTTTAGTACACTATTACTAAGTAAAACTCAAACCACTCCTC
TTTCCATAGTTCCACAACTGGGCGACAATGTTGTTCTACCACCAACACGC
CCATGGACCACCAACGAACCAGGCGTTACACCCGACTCTTTGAAAAACAT
GAAAGACCTCAAATTGGCGTTAGAAGATACATTAAACCCATTCAAACATA
AAAAGAAGACACCAAAGaaatgtattttcaaaaagacattGTCCAAAACT
ACCTTCGTGGGTGGTTTAAAAGCAGGGAATTTCACCAATAAAGGCACTGT
GACGTCAATGAGTGTCTGTAAAGCAATGTGTTGTCAGTCTGACAGATGTG
ACGTAGCAGTGATGATGAAGAACGGTTGTTTCTTATTGACATGCAAGAGT
GCGGAACTTTGCAAGCCAAGAAAGGCGCAAACAGAAAGTTTCACATTGAA
ATTGGCATATCGAGACAAGGTTAAAGAAATGGAGGCAATCGAGACAGAGG
AGGATAATGACGAAGGTATATTACTAATCTTTAAGCGAAATAATCATTTA
AAAGTGCCTGTCAAAGCTTTCATTTTTCTATTCTATTTGCCCATACACGT
ATTTCGAAGACTCATCAGAAAGGCTCGGACAAAAGCGAACATTGAATGCT
GTTGTCATTAGAATGATTAAAACACTGAATGttgagttaaaactctacat
tTTATTCTAAATTATTGACTTGGGAGTGTCTCTGAGGCGTAAAAACATCC
AAAGTGAAAGAGATTGTTCAAATCAAAAGGTTTAAAATGTTGAATAGGCT
TGAATAGGCGCGCTAATAATAAGCAACATGTAACTAAGGATCTCAGGAAA
GCTATTATGCTCCGTTCCCAACTTAAACGCACTGCTAATAAAACAAAGAA
TCCTGAGGATGTTGCTCGTTATAATCGTCAGAGAAACTTTGTTGTTAATA
AAAATAGGAAAGCTAAGAAATCTTTCTTCCTCAAAAATGACCCAAAACAA
TCTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Ttgtaactattttttttttattaccaacgttaaataaagaacaaataaat
aaaataaatttttgatgttttcgCGCACTGTTAACGGGGGCTTCTTTTGA
TGTTGCGCGCACTGTTACAGGGGTATTTGATGCTTTCTCGCACTATTACG
GGGGCTTCTTTTGATGTTGCGCGTACTGTTACGGGGGTATTTGATGCTTT
CGTGCACTGTTACGGGGGCTTCTTTTTATGGTGCACGCTTCTTTTGAggc
ttcttttgaaaatacGTAATGGGTAAAACAGCTTTGATTCATTTTCATCC
ACAATTTCTTCCCTTTTACCTCAGATGACGAAACGGAAGATGAAGATTCT
CACACGTCATCAACGTCCACTGCACTTCCACTAAATCCTAAGATATCACC
AACACTGCCCGTCCCAGTTCTCTTACAAGAGTCCTTAACCGACAATGGAA
AACTACAGAAACCTATCAGTGATACCATACCCCCGGTTTTACGACCACAA
AACGGGGTAACTTCATGGTGTTCTCCATCATTCATATTGGCCGGTGTTGA
ATTGAACGGGGGTATTCAATCGGGACCATCCAAAATTCTTGGTAATGTCT
CTACAATACAAGAATGTGTTAGCGAATGTTGTCGTGTTCCCGATTGTACT
GTTGCGTATACGGAAGGCAAGACGTGTTACGCTGTACTGTGTTTGAATCA
AAATATATGTCAAGCGCGCATTTCGACGCCGTCAAAAAGCCTCGGTTACG
TCGTTAGAAACGGTTGGTCGCTTTTCCCGTCAGAACAAAACGCCTTTAAA
GGAGCTGCTTTCCTAAACACTCAACGGCCTGAAATCATCCCAGATACGAC
CCTACAaacaacgacaacgaccactTCTACTCCAACAACTACAACAAGTA
CCGTGACAACGACCCTTGCAACGACCAACTTAGCAACCACACCCCTAACA
ACGACAACAGAAATACCTAAAAACGTCAGTATTGACATTTCCTCAATAAC
GCCAGAATCAactgtcaataaaactgaaacATGCCGCTCTAACGGAACTC
TAACCGACCACCGTTTCGTTGCCGGAATGAAAGCCGGCATTTTTACCGAC
CACGGTGAACTTTCTGATGTCGATGATATACCGTCGTGTGTCAAATACTG
CTGTCTAGATAAACTGTGCGACGTCGCTTACATGGTCGGGAGACGTTGCT
ACACACTTCAATGCTTTAGTCGTCAAACGTGCCAGACGTTTCCTGCTCCA
AATTTCTTTCTAAACCCGGTCATTGCATTCGTGGTCCGAACGAAGCCACC
AAAAGTTGACATCATCAGTGTTGATTTCATTAAACATAACTATACTGTAC
CACtaacaaattcaacttttagAAATTCTAGTATGACAGACAAACCCAGC
ATTAATGTTAAATTGAGTAAGAAAACAATGGACAATTCAAATCAGCCGTC
AAAAGAAAATGACGAATTCGTTGAAGATCAAGTTGAATCAGGATCAGGTT
CCGGAATAGACAGTCCTGGTTTTACACGTGGAAACGTACCAGATGCGGTA
TTGGACCAGTTCGAGAAAACGCAAGAACGATTGCCACAACCGACAGAAAG
ATACTATTTCCCTCTGAGCGATGTGGATTCAAATGTGATCAAATCATTGA
GTGATGATAAAGGTATGGTCtgatatttcttttgtttcattgACTACGGT
AgactctccctaattcgaacttctattattcaaacCTTCTAGGTATAATC
CTAACTAGTACTTAGTCCCTGTCAAGgaaaaaaaacagtaaaaattacTT
TCTTTATTTCGAATTATCGAGAGTGAACTGTATAATATCTCGATACCTTG
GAACAATAACTTTTGGTAATATAATTGTTTAAAGTAACAGATTTTGGCTT
GGCTACTATTAccatacaaaagaaaaatatggttTTCATCTTTCGCCCGC
CACATCAAACTCAATAACAATTACTTTCCCTAAATTTTCCTTCGCAGATT
TCACTGAGTGTAGTTCAACAAAATACggttgtgagcatttttgtatCACC
CTCCTACACGGAGGTCCAAGATGTATGTGTAGGAACGGTTATCAGCTAGC
ATTGGACGGCCAACATTGTCTCTACGAAGGAGAGTGTGAACCAAAAGCAC
ATGGTTGTGATCAGGCGTGTAAATTTGTGACTGATGGCTTTCAATGCCAG
TGCAGAAGTGGTTACGTATTGAAGAAGACGGCATATAAAAGCTCATGCCA
AGGTGAGAAATGAAGACTTCAATTTTATAGAAAATTAAGACTTTTTAAGC
CCGTGTTTAAAAATAGTCATTGTTAggctttaaagggacataacagtact
tgtgaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaacaaa
tgtcacatgtcaaaataaaaaaccaaaccaaatatggctaattttaattg
ttcaattgttttacaagtttgttttggactcgtgattttaattgttctat
ttaatgacacgtggttcgcgcaatgtttacattttacttctttaatgtcc
ctttaaaatgaATTAACGTACAGAGAAACTTATTAAAGTGTActtcattt
taaaaagaacCAGTGTTACCAGACTATAGCCAAGTCTAATTATTCTTTGA
ATTGCTGAGTTTTTACGTTCAATAATATGAACCAAATTATGGaacgaatt
tttacaaaaatttacctCCTTTCATTGCTTCCTCTGATAGATTTAGACGA
GTGTGCAATGGACATGCATAGTTGTAGTCATGGTTGTTTAAACACACCTG
GTAGTTATGTTTGTCAGTGTCCTGGTGGTTACCAATTGGGTACAGATCGG
TTGACTTGTCAGCTTATCATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000026XLOC_000026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000041-exon-sc0000001-1491911889:1056169..1056580TCONS_00000041-exon-sc0000001-1491911889:1056169..1056580Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1056169..1056580TCONS_00000041-exon-sc0000001-1510915933:1056169..1056580Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1056169..1056580TCONS_00000041-exon-sc0000001-1575043694:1056169..1056580Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1059367..1059930TCONS_00000041-exon-sc0000001-1491911889:1059367..1059930Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1059367..1059930TCONS_00000041-exon-sc0000001-1510915933:1059367..1059930Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1059367..1059930TCONS_00000041-exon-sc0000001-1575043694:1059367..1059930Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1059997..1060616TCONS_00000041-exon-sc0000001-1491911889:1059997..1060616Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1059997..1060616TCONS_00000041-exon-sc0000001-1510915933:1059997..1060616Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1059997..1060616TCONS_00000041-exon-sc0000001-1575043694:1059997..1060616Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1061194..1061394TCONS_00000041-exon-sc0000001-1491911889:1061194..1061394Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1061194..1061394TCONS_00000041-exon-sc0000001-1510915933:1061194..1061394Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1061194..1061394TCONS_00000041-exon-sc0000001-1575043694:1061194..1061394Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1062017..1062196TCONS_00000041-exon-sc0000001-1491911889:1062017..1062196Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1062017..1062196TCONS_00000041-exon-sc0000001-1510915933:1062017..1062196Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1062017..1062196TCONS_00000041-exon-sc0000001-1575043694:1062017..1062196Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1062570..1062803TCONS_00000041-exon-sc0000001-1491911889:1062570..1062803Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1062570..1062803TCONS_00000041-exon-sc0000001-1510915933:1062570..1062803Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1062570..1062803TCONS_00000041-exon-sc0000001-1575043694:1062570..1062803Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1063009..1064052TCONS_00000041-exon-sc0000001-1491911889:1063009..1064052Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1063009..1064052TCONS_00000041-exon-sc0000001-1510915933:1063009..1064052Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1063009..1064052TCONS_00000041-exon-sc0000001-1575043694:1063009..1064052Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1064428..1064883TCONS_00000041-exon-sc0000001-1491911889:1064428..1064883Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1064428..1064883TCONS_00000041-exon-sc0000001-1510915933:1064428..1064883Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1064428..1064883TCONS_00000041-exon-sc0000001-1575043694:1064428..1064883Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1067593..1068930TCONS_00000041-exon-sc0000001-1491911889:1067593..1068930Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1067593..1068930TCONS_00000041-exon-sc0000001-1510915933:1067593..1068930Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1067593..1068930TCONS_00000041-exon-sc0000001-1575043694:1067593..1068930Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1069266..1069520TCONS_00000041-exon-sc0000001-1491911889:1069266..1069520Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1069266..1069520TCONS_00000041-exon-sc0000001-1510915933:1069266..1069520Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1069266..1069520TCONS_00000041-exon-sc0000001-1575043694:1069266..1069520Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1491911889:1070009..1070141TCONS_00000041-exon-sc0000001-1491911889:1070009..1070141Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1510915933:1070009..1070141TCONS_00000041-exon-sc0000001-1510915933:1070009..1070141Clytia hemisphaericaexon
TCONS_00000041-exon-sc0000001-1575043694:1070009..1070141TCONS_00000041-exon-sc0000001-1575043694:1070009..1070141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1056169..1070141 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (6.54583 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	3.08986	3.71917	0.86796	1.07511	1.39137	1.06707	3.07382	3.03715	2.12655	6.54583	1.56926	2.80505	0	0	2.4542	2.91448	1.62576	2.26666	1.84311	6.09058	0.313852	0.171782	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
500100015002000250030003500400045005000SequenceMATN2
Match NameE-valueIdentityDescription
MATN21.172e-1840.32Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4[more]
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