TCONS_00000039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000039
Unique NameTCONS_00000039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000039 ID=TCONS_00000039|Name=TCONS_00000039|organism=Clytia hemisphaerica|type=transcript|length=385bp
tttgttttgaaaggctTTGGGCCTTATGTTGATTAGAGCTTTCATATGGC
AGTTTGTTTTATGGATAGTCTTAATCGCATGCCAAAAAGGCACAAATGCC
AACTCAGTGCGCACACCAACCAGCACTACGCCGTACGTTTGTGTAGACAG
TTCACGTTCGATTGTCAACTACACTCAATATTATCCAAACCTGATCGAGC
AATATTTTGTACCGTCCATCAAATCGTGTCTATATCTTTGTTGTGAAAAT
CACCGCTGTAATGGCATTTATTATGGAGATAACAACAAATGCTATCATGA
ACCATGTGCAGGATATTGCGGAGATACATCATTTTCCAAGAGAAGCGAGA
TCACCAAACATAAGCCAGGCGAAGAGGAGGATTTG
Run BLAST on NCBI

protein sequence of TCONS_00000039-protein

>TCONS_00000039-protein ID=TCONS_00000039-protein|Name=TCONS_00000039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MLIRAFIWQFVLWIVLIACQKGTNANSVRTPTSTTPYVCVDSSRSIVNYT
QYYPNLIEQYFVPSIKSCLYLCCENHRCNGIYYGDNNKCYHEPCAGYCGD
TSFSKRSEITKHKPGEEEDL
Run BLAST on NCBI

transcript from alignment at sc0000001:1018726..1019866+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000039 ID=TCONS_00000039|Name=TCONS_00000039|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at sc0000001:1018726..1019866+ (Clytia hemisphaerica)
tttgttttgaaaggctTTGGGCCTTATGTTGATTAGAGCTTTCATATGGC
AGTTTGTTTTATGGATAGTCTTAATCGCATGCCAAAAAGGTATTTTGTtt
aattcaatttctttttcttcgtcTTTTTTTCCTGGCAAAAAGCTTTGAGA
GATCTTTGAGGTACCTGCAAAGCCCTCCAAATGATGAGCTTGCCTTTTGT
GAAAATTAGCAGCGATTGAAGTTGTTCAAGAACTGTTTCTTTCCATTTCA
AAACAACCACGTTTCatgattttttccaatttcccaaaaaagttatgagt
atccacgatgaaatggaaaaaaaacacaattattataaaaaagcgtCTAG
AGTAGGGTTTGGACCTTTGGAGACAATGCTATATttcctttttataaaaa
taatagcATAACCTGGATGgattttgggattttaaaaCAATATAAACTAT
ATACAGTGTGTTCGGAGAACGCGGAACTGATGAATTAATTAAAATCCTTA
ATGTTCCATACAAATCTTCATGTCTTACTACACACTAGTATTtttccccc
taaactcgatccaatccttttttgacacctttttctattgtctataggag
tgaaaaaagactgggacagttttagggtggtaaaacagaaaaaatgcccg
cgcggcaattggcagctacagttgaaaaggtgtattaaataACACTTTGG
GAATCGACGACGCTTCAAATCAATGACGCTTTCGAGGCACACTGTAGACA
AAATAAAATTACAGTTTTATATTGTCTTGCTTTAGAAGGGATATCGTGTT
ATTGCTATATCTAATTAAATTAAAAACCTCTAGTATCTCTTTCAGGCACA
AATGCCAACTCAGTGCGCACACCAACCAGCACTACGCCGTACGTTTGTGT
AGACAGTTCACGTTCGATTGTCAACTACACTCAATATTATCCAAACCTGA
TCGAGCAATATTTTGTACCGTCCATCAAATCGTGTCTATATCTTTGTTGT
GAAAATCACCGCTGTAATGGCATTTATTATGGAGATAACAACAAATGCTA
TCATGAACCATGTGCAGGATATTGCGGAGATACATCATTTTCCAAGAGAA
GCGAGATCACCAAACATAAGCCAGGCGAAGAGGAGGATTTG

Coding sequence (CDS) from alignment at sc0000001:1018726..1019866+

>TCONS_00000039 ID=TCONS_00000039|Name=TCONS_00000039|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000001:1018726..1019866+ (Clytia hemisphaerica)
ATGTTGATTAGAGCTTTCATATGGCAGTTTGTTTTATGGATAGTCTTAAT
CGCATGCCAAAAAGGCACAAATGCCAACTCAGTGCGCACACCAACCAGCA
CTACGCCGTACGTTTGTGTAGACAGTTCACGTTCGATTGTCAACTACACT
CAATATTATCCAAACCTGATCGAGCAATATTTTGTACCGTCCATCAAATC
GTGTCTATATCTTTGTTGTGAAAATCACCGCTGTAATGGCATTTATTATG
GAGATAACAACAAATGCTATCATGAACCATGTGCAGGATATTGCGGAGAT
ACATCATTTTCCAAGAGAAGCGAGATCACCAAACATAAGCCAGGCGAAGA
GGAGGATTTGATGTTGATTAGAGCTTTCATATGGCAGTTTGTTTTATGGA
TAGTCTTAATCGCATGCCAAAAAGGCACAAATGCCAACTCAGTGCGCACA
CCAACCAGCACTACGCCGTACGTTTGTGTAGACAGTTCACGTTCGATTGT
CAACTACACTCAATATTATCCAAACCTGATCGAGCAATATTTTGTACCGT
CCATCAAATCGTGTCTATATCTTTGTTGTGAAAATCACCGCTGTAATGGC
ATTTATTATGGAGATAACAACAAATGCTATCATGAACCATGTGCAGGATA
TTGCGGAGATACATCATTTTCCAAGAGAAGCGAGATCACCAAACATAAGC
CAGGCGAAGAGGAGGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000025XLOC_000025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000039-proteinTCONS_00000039-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000039-exon-sc0000001-1491911889:1018726..1018814TCONS_00000039-exon-sc0000001-1491911889:1018726..1018814Clytia hemisphaericaexon
TCONS_00000039-exon-sc0000001-1510915933:1018726..1018814TCONS_00000039-exon-sc0000001-1510915933:1018726..1018814Clytia hemisphaericaexon
TCONS_00000039-exon-sc0000001-1575043694:1018726..1018814TCONS_00000039-exon-sc0000001-1575043694:1018726..1018814Clytia hemisphaericaexon
TCONS_00000039-exon-sc0000001-1491911889:1019571..1019866TCONS_00000039-exon-sc0000001-1491911889:1019571..1019866Clytia hemisphaericaexon
TCONS_00000039-exon-sc0000001-1510915933:1019571..1019866TCONS_00000039-exon-sc0000001-1510915933:1019571..1019866Clytia hemisphaericaexon
TCONS_00000039-exon-sc0000001-1575043694:1019571..1019866TCONS_00000039-exon-sc0000001-1575043694:1019571..1019866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1018726..1019866 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.228237	0	0.856806	0	0	0	0	0.331588	0.204226	0	0.134063	0	0	0	0	0	0	0	0	0	0	0	0	0.518817	0	0.294985	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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