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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000037 ID=TCONS_00000037|Name=TCONS_00000037|organism=Clytia hemisphaerica|type=transcript|length=2026bpRun BLAST on NCBI protein sequence of TCONS_00000037-protein >TCONS_00000037-protein ID=TCONS_00000037-protein|Name=TCONS_00000037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp MGSLLSLIGIGSAASCLPSIGGCAASQIACCCGSAACSLCCKACPSCQNSRun BLAST on NCBI transcript from alignment at sc0000001:1005161..1016571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000037 ID=TCONS_00000037|Name=TCONS_00000037|organism=Clytia hemisphaerica|type=transcript|length=11411bp|location=Sequence derived from alignment at sc0000001:1005161..1016571+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1005161..1016571+ >TCONS_00000037 ID=TCONS_00000037|Name=TCONS_00000037|organism=Clytia hemisphaerica|type=CDS|length=13710bp|location=Sequence derived from alignment at sc0000001:1005161..1016571+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000037 vs. Swiss-Prot (Human)
Match: SERC3 (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2) HSP 1 Score: 306.22 bits (783), Expect = 1.695e-95 Identity = 194/445 (43.60%), Postives = 268/445 (60.22%), Query Frame = 3
Query: 453 QNSTASRIGYTLVLLLGFILSCVMLSPNIRQKLNKVPHLCP------------TFDCDQVVGYVAVYRVCXXXXXXXXXXXLITFKIRNSKDPRASIHNGFWAIKLLVFIALLVGAFYIPKGDFSRVWMYXXXXXXXXXXXXXXXXXXXXAYSWSQKWIGKYEETDNKIWFIGLAVCTGGLYAIALAITICGFIFYTKTSGCGLNKFFLSFNFIIAVLLSLISIHPRVQESQPTSGLLQASIISAYSMYLTLSAMSNEPGTDCNPG-SSF---LQSDSFAPGFDTQTVLAA-------------------IFLFCTVVYSCVRTSAKSSSLSIQSDDADIEEVLLIENNGQGDDDVEYKGQ--KVYDNESTEVAYNYSFFHFTYALASLYIMMMLTNWYSPEGANFKTLTSSMATVWVKMASSWACFVLFGWTLVAPMLFPDREF 1676
+NST +R+ Y +LLL ++S +M + L K+P C DCD +VGY AVYR+ FAM FFF+ +L+ FK++ SKD RA++HNGFW K+ I ++VG+FYIP G FS VW +GMIG LFILIQLVLL+DFA+SW++ W+ + EE + ++W+ L T Y +++ + +YTK GC NKFF+S N I+ V+ S+ISIHP++QE QP SGLLQ+S+I+ Y+MYLT SAMSNEP CNP SF + + + APG T V +F+ C ++YS +RTS S + +D V+L + G D E GQ + DNE V Y+YS FH LASLYIMM LT+WYSP+ A F+++TS VWVK++SSW C +L+ WTLVAP++ R+F
Sbjct: 33 KNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLC-LLYSSIRTSTNSQVDKLTLSGSD--SVILGDTTTSGASD-EEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPD-AKFQSMTSKWPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDF 472 The following BLAST results are available for this feature:
BLAST of TCONS_00000037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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