TCONS_00000028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000028
Unique NameTCONS_00000028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000028 ID=TCONS_00000028|Name=TCONS_00000028|organism=Clytia hemisphaerica|type=transcript|length=2171bp
TAACAAAACAAGGATTTTGTAACAAAATGATCCTAACaagaatgaaagaa
aaaatacaaattattttataggttaaataCTACGAATTAAAATAACCCTA
CGAaagaaatttcaatgaaaaattgcCAAAGATGACAGTCGAAATTGATG
TCCCGAATATGGGACCTAACTTCTGTGAAAAAGGTCCcccaaaatgataa
attttctgCTCCAAACTAAGTTGATTGTTAACTTGACTGGGTGATCCTGT
TAATAGAAACTAAAGGTGACTTTAAAAATTCTACACAAACAAGACAAGAA
CTTACACAAGAGTTTTTAAAAACCCACCGAAATATAAACATTATTTCAAG
TACTATTTCTAAAGTTTCATTGTCACAGTTTGAGATTCCACACTATTAAC
CAACAAAACATTATTGACAGGAACAAATTGCCCTGTGATCATTTTAATGA
CCTCTTGGGCGCTTATTCCACCCATCACAGCCGCCATAGGGTGGAATTCA
GAGAGGTCTGAACGTAACATTTCTTCTAAAATGTTTAAAGGTGATTCAAA
CTCTTCTAACAAACAGCTTTTCATGACGTTTTCAGTGACAGATGACAAAG
AGATTAAATCTTTAGGTGCTTGTTGGTCAAGGGATGAATGTAATGTACGG
AAGGCTAGATACAAGCTAGCTCCATTTTCTTGATATTGTTCAAGGGTGTC
TTTGATTTTATGCTCTGCTAAATTCTGACGAATCTCGTCGTGATAGGAGA
GCCCATACTGCACTTGAATAAACGCAGCGTTTTTACAGAACGTTTGGATC
TCGTCAGGTTGAATAAAACTCAAAGACCTTTGGAGGTCTTCTAATGATTC
TCGAACAAGATCGGTCACTTTCTGTATATCACTTTCAGCTTTAGTTTTAT
AAACGTTCTGTAACTCAATATAGCGTTTCGAATCTGAGAACATGTCTGGT
AAAGAGCCACGTAAAGGTAGTGTACCACTCTGGTTAACAAACTCTTTGAG
AGCTCTAACGAGAATCCAGAATTTTGAATTGTTTGCAGATTGGAGGGGAT
GATCAGCCATTGGATTATCAAGAACGTTACGAACATCAGATGGTACAAAC
GTACCAGAAAAAACATTATTCACATTTGTCAACGCTTCTTCAAAATTCTC
TTCATGCACAGGAACGCCATCCTCGTTTTTCAAGTTTAAACTTCtcacaa
tttctttaatttggcatttttctttgtaatttttggGCCATTTTTGATCT
GTTTGTTCTTGCCACCGTTCAAGGGCTTTGTAAAGAACCACAAGGAATGG
TGTGTGTGAATGCTCCAGATTATCCATAGTAGATAAGTCCATTTTATTGA
AATAATCAACTAGCTCCGGAAACGGGCAATCTAATCTCAAATCGGAATGA
GTATTATCAGGATGTGCTTTAATGATGACATGCTCTTTGTAAACCAATCT
TAAATAACCAAACATTCCAACACTGTCCACAATAAATAACGGAATATCAT
GTTCCCAAAAATAATGACTGAGTTTCAATAAATCATGTTCTGAAACGCGT
GAGCAAATAACTGCGGTAAATTTACGGTAAAATTCTGGGTCATTATCTAA
CAGGTTTGCCGCATTCTCTTTAATCCAATTACCACTGGTATCTGGATTCA
ACTCTTGAAGCAACTCACAGGCTACTTTAGCACGTGGTTTCCCAATAGAT
TCGGGATCAACAAAGAAATTACTACTTAGATCGTCATCATTGACCAAATG
ATCATCCACAATGTAAAATTTACCAATTCCTGGTAAAACAAGACATTTTA
AAGTTTCGGTTGCCGTTGCTGTAGCATTAATCAAGCAAATCCGAGCATTC
TCCAATGCTGTTTGGCCATCATTCCCCCATAAACGTAATTGCCGATCATA
TTTTTGTTCCTTTTGTATAGGATcttgtttttggatttttttctttggat
tttcCAGTGTTTCACATTCCATTACTTCACTGTGgtgttttttattgtta
ttgtcagttgaagattcttttcttttcatgtTCTAACATTCTGAAACGAT
ACAAAAAACAAACTACTGTAATTGTGAATAGCAGGAAGGAGAATTGAAAA
CTTCGAAAACACAGTAGAATAATAACTTTTTAAAGAATCGTCTCTTAACC
AATTCTTGTGCTACAGCGTTT
Run BLAST on NCBI

transcript from alignment at sc0000001:752391..756932+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000028 ID=TCONS_00000028|Name=TCONS_00000028|organism=Clytia hemisphaerica|type=transcript|length=4542bp|location=Sequence derived from alignment at sc0000001:752391..756932+ (Clytia hemisphaerica)
TAACAAAACAAGGATTTTGTAACAAAATGATCCTAACaagaatgaaagaa
aaaatacaaattattttatagcttaaccctttaagtgccgatgtcgtata
tatacgacatgggctatataggagggcgaagccctcctgtaatgcccagt
ttgagttagaaatcgttatttttgNNNNNNNNNNNNNNNNNNNNNNNNNN
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Nttccttctagatcaggagatataagcccttaaagtttgaactagcgatt
ttttaaaaaaaacttagaaaaaaggaccctggcactcaaagggttaaata
CTACGAATTAAAATAACCCTACGAaagaaatttcaatgaaaaattgcCAA
AGATGACAGTCGAAATTGATGTCCCGAATATGGGACCTAACTTCTGTGAA
AAAGGTCCcccaaaatgataaattttctgCTCCAAACTAAGTTGATTGTT
AACTTGACTGGGTGATCCTGTTAATAGAAACTAAAGGTGACTTTAAAAAT
TCTACACAAACAAGACAAGAACTTACACAAGAGTTTTTAAAAACCCACCG
AAATATAAACATTATTTCAAGTACTATTTCTAAAGTTTCATTGTCACAGT
TTGAGATTCCACACTATTAACCAACAAAACATTATTGACAGGAACAAATT
GCCCTGTGATCATTTTAATGACCTCTTGGGCGCTTATTCCACCCATCACA
GCCGCCATAGGGTGGAATTCAGAGAGGTCTGAACGTAACATTTCTTCTAA
AATGTTTAAAGGTGATTCAAACTCTTCTAACAAACAGCTTTTCATGACGT
TTTCAGTGACAGATGACAAAGAGATTAAATCTTTAGGTGCTTGTTGGTCA
AGGGATGAATGTAATGTACGGAAGGCTAGATACAAGCTAGCTCCATTTTC
TTGATATTGTTCAAGGGTGTCTTTGATTTTATGCTCTGCTAAATTCTGAC
GAATCTCGTCGTGATAGGAGAGCCCATACTGCACTTGAATAAACGCAGCG
TTTTTACAGAACGTTTGGATCTCGTCAGGTTGAATAAAACTCAAAGACCT
TTGGAGGTCTTCTAATGATTCTCGAACAAGATCGGTCACTTTCTGTATAT
CACTTTCAGCTTTAGTTTTATAAACGTTCTGTAACTCAATATAGCGTTTC
GAATCTGAGAACATGTCTGGTAAAGAGCCACGTAAAGGTAGTGTACCACT
CTGGTTAACAAACTCTTTGAGAGCTCTAACGAGAATCCAGAATTTTGAAT
TGTTTGCAGATTGGAGGGGATGATCAGCCATTGGATTATCAAGAACGTTA
CGAACATCAGATGGTACAAACGTACCAGAAAAAACATTATTCACATTTGT
CAACGCTTCTTCAAAATTCTCTTCATGCACAGGAACGCCATCCTCGTTTT
TCAAGTTTAAACTTCtcacaatttctttaatttggcatttttctttgtaa
tttttggGCCATTTTTGATCTGTTTGTTCTTGCCACCGTTCAAGGGCTTT
GTAAAGAACCACAAGGAATGGTGTGTGTGAATGCTCCAGATTATCCATAG
TAGATAAGTCCATTTTATTGAAATAATCAACTAGCTCCGGAAACGGGCAA
TCTAATCTCAAATCGGAATGAGTATTATCAGGATGTGCTTTAATGATGAC
ATGCTCTTTGTAAACCAATCTTAAATAACCAAACATTCCAACACTGTCCA
CAATAAATAACGGAATATCATGTTCCCAAAAATAATGACTGAGTTTCAAT
AAATCATGTTCTGAAACGCGTGAGCAAATAACTGCGGTAAATTTACGGTA
AAATTCTGGGTCATTATCTAACAGGTTTGCCGCATTCTCTTTAATCCAAT
TACCACTGGTATCTGGATTCAACTCTTGAAGCAACTCACAGGCTACTTTA
GCACGTGGTTTCCCAATAGATTCGGGATCAACAAAGAAATTACTACTTAG
ATCGTCATCATTGACCAAATGATCATCCACAATGTAAAATTTACCAATTC
CTGGTAAAACAAGACATTTTAAAGTTTCGGTTGCCGTTGCTGTAGCATTA
ATCAAGCAAATCCGAGCATTCTCCAATGCTGTTTGGCCATCATTCCCCCA
TAAACGTAATTGCCGATCATATTTTTGTTCCTTTTGTATAGGATcttgtt
tttggatttttttctttggattttcCAGTGTTTCACATTCCATTACTTCA
CTGTGgtgttttttattgttattgtcagttgaagattcttttcttttcat
gtTCTAACATTCTGAAACGATACAAAAAACAAACTACTGTAATTGTGAAT
AGCAGGAAGGAGAATTGAAAACTTCGAAAACACAGTAGAATAATAACTTT
TTAAAGAATCGTCTCTTAACCAATTCTTGTGCTACAGCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000017XLOC_000017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000028-exon-sc0000001-1491911889:752391..752460TCONS_00000028-exon-sc0000001-1491911889:752391..752460Clytia hemisphaericaexon
TCONS_00000028-exon-sc0000001-1510915933:752391..752460TCONS_00000028-exon-sc0000001-1510915933:752391..752460Clytia hemisphaericaexon
TCONS_00000028-exon-sc0000001-1575043694:752391..752460TCONS_00000028-exon-sc0000001-1575043694:752391..752460Clytia hemisphaericaexon
TCONS_00000028-exon-sc0000001-1491911889:754832..756932TCONS_00000028-exon-sc0000001-1491911889:754832..756932Clytia hemisphaericaexon
TCONS_00000028-exon-sc0000001-1510915933:754832..756932TCONS_00000028-exon-sc0000001-1510915933:754832..756932Clytia hemisphaericaexon
TCONS_00000028-exon-sc0000001-1575043694:754832..756932TCONS_00000028-exon-sc0000001-1575043694:754832..756932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:752391..756932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.5648	86.3345	57.7158	49.7006	25.8176	18.8359	15.9576	17.0632	13.592	13.3946	11.8896	9.78041	9.98053	6.6309	11.6026	12.5276	13.435	12.0255	7.70803	11.0191	13.5943	14.659	55.1497	46.0644	13.0434	15.1136	17.3727	15.6652	32.935	35.2528
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR030667APP-BP1
IPR000594ThiF_NAD_FAD-bd
Vocabulary: Molecular Function
TermDefinition
GO:0019781NEDD8 activating enzyme activity
GO:0008641small protein activating enzyme activity
Vocabulary: Biological Process
TermDefinition
GO:0045116protein neddylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045116 protein neddylation
molecular_function GO:0019781 NEDD8 activating enzyme activity
molecular_function GO:0008641 small protein activating enzyme activity
Blast
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BLAST of TCONS_00000028 vs. Swiss-Prot (Human)
Match: ULA1 (NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 4.874e-136
Identity = 227/534 (42.51%), Postives = 332/534 (62.17%), Query Frame = -2 
Query:  362 YDRQLRLWGNDGQTALENARICLINATATATETLKCLVLPGIGKFYIVDDHLVNDDDLSSNFFVDPESIGKPRAKVACELLQELNPDTSGNWIKENAANLLDNDPEFYRKFTAVICSRVSEHDLLKLSHYFWEHDIPLFIVDSVGMFGYLRLVYKEHVIIKAHPDNTHSDLRLDCPFPELVDYFNKMDLSTMDNLEHSHTPFLVVLYKALERWQEQTDQKWPKNYKEKCQIKEIVRSLNLKNEDGVPVHEENFEEALTNVNNVFSGTFVPSDVRNVLDNPMADHPLQ-SANNSKFWILVRALKEFVNQ--SGTLPLRGSLPDMFSDSKRYIELQNVYKTKAESDIQKVTDLVRESLEDLQRSLSFIQPDEIQTFCKNAAFIQVQYGLSYHDEIR-QNLAEHKIKDTLEQYQ--------ENGASLYLAFRTLHSSLDQQAPKDLISLSSVTENV--MKSCL---LEEFESPLNI----LEEMLRSDLSEFHPMAAVMGGISAQEVIKMITGQFVPXXXXXXXNSVESQTVTMKL 1900
            YDRQLRLWG+ GQ ALE+A +CLINATAT TE LK LVLPGIG F I+D + V+ +D  +NFF+   SIGK RA+ A E LQELN D SG++++E+  NLLDNDP F+ +FT V+ +++ E   L+L+   W   IPL I  + G+ GY+R++ KEH +I++HPDN   DLRLD PFPEL ++F   DL  M+  +HSHTP++V++ K L +W  +T+ + PK YKEK   ++++R   LKNE+G P  EENFEEA+ NVN   + T +PS + ++ ++   D  +  +     FWIL RALKEFV +   G LP+RG++PDM +DS +YI+LQNVY+ KA+ D   V + V + L+ + ++   I   E++  C N+AF++V         +R ++LAE    DT+ + +        +N   LYL  R +     QQ     +S   V E++  +KSCL   L+E+   + +    + E  R   +E H +AA +GG +AQEVIK+IT QFV  NN  + + +   + T +L
Sbjct:   13 YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFND---DRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRV---------VRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
The following BLAST results are available for this feature:
BLAST of TCONS_00000028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ULA14.874e-13642.51NEDD8-activating enzyme E1 regulatory subunit OS=H... [more]
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