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TCONS_00000026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000026
Unique NameTCONS_00000026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1181

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000026 ID=TCONS_00000026|Name=TCONS_00000026|organism=Clytia hemisphaerica|type=transcript|length=1181bp
ggtccactgataaacaatccaacctagtcccaTCCCTTGTCACGAGTAAA
CAACCTAACCTAGTTTCATTCCTGGTCACTgggttcttaaaaaaagaaga
aactctCAGGCTctcagctatccaacgagctataaaaaaaagtctaaatc
TTTCTGGTTCAGGAAGTATTGGCATTTAGATATTTTCCTAGCTCATTGTA
ACAAAAAAGGCACGGAACGCTGCTTGGTGGAAATACAGTACATGGTGTGA
tttgcgttgttactaaaagaggtaacgagtggtaaggatgtggtaacgag
tggtaacgaggtggtaacgaggtaaccAGTTAAATACGTTGGCCCTAAAA
GGCTCTAATTTTGAATTACtcgattctggtgaatgtagaGCAGGACTTAA
TGTTTCCAGTGAATATgatagtggagttgatggtcctgttgaatgtgcag
cagggttttgtggttctggtgaatttaatggtggagttgatagttctggt
gaatgtgatgacAGAGTTGGTGTTTCCGGTGAATGGGaggcaggagttga
tggttctggttaatGTGCTGGTGGAGGTAACGGTACTGGTGAATGCGATG
GTGGAGTTGACGGTTCTGTTGAATGCAATGTTGGAGTTTGAGTTGCTGAT
GAAGTTGGAGTTAATGGTGAATTCGATGGTggatttggtggttctggtgc
ATATGATTGTGGAGCAGGAGTTTGAGTTTCTTGTGGATGTAAGGGTGGAG
CTTATAGTCCAAACCTATAAGCCAACAATTATTACTAATATTAGGTATCT
GGCAAAATAAGTCAAACTCCGACAGTTGTTAATGTCTTTAGATAGCATtt
acaatatttgactctttaGGGCTACCATTTtcacctcgttaccacatcgt
taccacatcgttaccagtCGTTACCAgccgttaccactcgttaccagccg
ttaccactcgttaccacttttagtaacaacgtgtgatttaaagtattttg
gaatttgtataaattttttctgctttttcacaCAGCCTGCGTATTTATAC
GGTTTGAAAAGATGGTTTTACCGGTGTGAACCAGACACTCTCTATTGGTC
ATAACTCTATACCTAAATGATTTGTCAGTGATTTGTTATCGGATATCGTA
TCTGTTCTCAGTTATGTCAgctattaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000001:730563..731773+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000026 ID=TCONS_00000026|Name=TCONS_00000026|organism=Clytia hemisphaerica|type=transcript|length=1211bp|location=Sequence derived from alignment at sc0000001:730563..731773+ (Clytia hemisphaerica)
ggtccactgataaacaatccaacctagtcccaTCCCTTGTCACGAGTAAA CAACCTAACCTAGTTTCATTCCTGGTCACTgggttcttaaaaaaagaaga aactctCAGGCTctcagctatccaacgagctataaaaaaaagtctaaatc TTTCTGGTTCAGGAAGTATTGGCATTTAGATATTTTCCTAGCTCATTGTA ACAAAAAAGGCACGGAACGCTGCTTGGTGGAAATACAGTACATGGTGTGA tttgcgttgttactaaaagaggtaacgagtggtaaggatgtggtaacgag tggtaacgaggtggtaacgaggtaaccAGTTAAATACGTTGGCCCTAAAA GGCTCTAATTTTGAATTACtcgattctggtgaatgtagaGCAGGACTTAA TGTTTCCAGTGAATATgatagtggagttgatggtcctgttgaatgtgcag cagggGTTGGTGGTTtaggtgaatgtgcatcagagttttgtggttctggt gaatttaatggtggagttgatagttctggtgaatgtgatgacAGAGTTGG TGTTTCCGGTGAATGGGaggcaggagttgatggttctggttaatGTGCTG GTGGAGGTAACGGTACTGGTGAATGCGATGGTGGAGTTGACGGTTCTGTT GAATGCAATGTTGGAGTTTGAGTTGCTGATGAAGTTGGAGTTAATGGTGA ATTCGATGGTggatttggtggttctggtgcATATGATTGTGGAGCAGGAG TTTGAGTTTCTTGTGGATGTAAGGGTGGAGCTTATAGTCCAAACCTATAA GCCAACAATTATTACTAATATTAGGTATCTGGCAAAATAAGTCAAACTCC GACAGTTGTTAATGTCTTTAGATAGCATttacaatatttgactctttaGG GCTACCATTTtcacctcgttaccacatcgttaccacatcgttaccagtCG TTACCAgccgttaccactcgttaccagccgttaccactcgttaccacttt tagtaacaacgtgtgatttaaagtattttggaatttgtataaattttttc tgctttttcacaCAGCCTGCGTATTTATACGGTTTGAAAAGATGGTTTTA CCGGTGTGAACCAGACACTCTCTATTGGTCATAACTCTATACCTAAATGA TTTGTCAGTGATTTGTTATCGGATATCGTATCTGTTCTCAGTTATGTCAg ctattaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000015XLOC_000015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000026-exon-sc0000001-1491911889:730563..731017TCONS_00000026-exon-sc0000001-1491911889:730563..731017Clytia hemisphaericaexon
TCONS_00000026-exon-sc0000001-1510915933:730563..731017TCONS_00000026-exon-sc0000001-1510915933:730563..731017Clytia hemisphaericaexon
TCONS_00000026-exon-sc0000001-1575043694:730563..731017TCONS_00000026-exon-sc0000001-1575043694:730563..731017Clytia hemisphaericaexon
TCONS_00000026-exon-sc0000001-1491911889:731048..731773TCONS_00000026-exon-sc0000001-1491911889:731048..731773Clytia hemisphaericaexon
TCONS_00000026-exon-sc0000001-1510915933:731048..731773TCONS_00000026-exon-sc0000001-1510915933:731048..731773Clytia hemisphaericaexon
TCONS_00000026-exon-sc0000001-1575043694:731048..731773TCONS_00000026-exon-sc0000001-1575043694:731048..731773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:730563..731773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0729995 0 0 0.121296 0.393775 0.237331 1.71191 2.41624 1.93175 1.82872 2.82105 1.64219 0.534046 0.151258 0.248709 0.535317 0.109601 0.252759 0.853601 0.730826 0.31761 0.206559 0 0.0760952 0.470681 0.454668 0.200194 0 0.203462 0.0831617
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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