TCONS_00000022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000022
Unique NameTCONS_00000022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000022 ID=TCONS_00000022|Name=TCONS_00000022|organism=Clytia hemisphaerica|type=transcript|length=1538bp
tatttttcataggtGTCACAGACGAACCAGACAACAATACCGAAAATCTA
ACGTGCCAAAGTCCTCGTAAAAGTCCGCATTCCAACGCGACCGGCAACCA
ATCTCATAagaaaacaatgacgtcatcaagtcaCTCCTCCACATCGtcat
caatgacgtcatcttcaTCGTTCTCCTCCTTAGATGATTTAGCGAGTTCG
CATGACAGCGAGTTGGAGAGGAATAAAGAGTTGATGAAAGAAGAGTATAA
GAGATATTTGGAGGATCCGAATAGCACTGAAATAAGCAATGCAGTACTGT
CAAAATCATTCTAATTGTATGGTCAAATAAACTAAGGCTTCGCACGATTG
GAATATTTCGAGGACCCGAATAGCATTGAAATAAGCAATGCAGTACTGTC
AAAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAG
AATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCT
AAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGA
ATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTA
AATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGAA
TATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTAA
ATCATTCTAATGGTATGGTCAAATAAACTAAAACTTCGCACGTATGGAAT
ATTTAGAGGACCCGAATAACACAGAAAtaagaaaaatcattttaatggTC
TAATAATGGTATGGTCAGATAAACTATATATGGAATATTCAGAGGATCCG
AATGGCACAAAAATGAGAAATACAGCATTGTCAAAATCCTTTTGATTGGA
ATCTTAAAGAGCTGTCATTCGGAGAGGAACAATTGCACCTGAAGACGCAG
ATAATCCAGACCTGTAGAAAGTAGGTTCGACCACTAAAGAAAGAAACAAA
CAGCGCAGAATTATTAAAATCGCCAGTTGATGGCGAACTATTCTTAGTAT
TGGATCAAGCTCGACTAATTTTGGAACATCTGACACTTTCAATAAATCAG
GCTTCCTTTTTTCAATAGTTCACGAAAATTTCTTTTAATGAAGTGCGTTT
CTTTCACCGTGAATTTGTGTGTCGCCGAAAGAAAAATCTTATCCAAAATC
TCATGATCGACATCATTatcttcaaaacatttttgtgtTATCTTTTGACG
CCATATATCCTATATACCGTGCctgaagaaagaaagaaatacaAAATTCT
TAACTGGCGCATCGATAATATGCTTAATTTAACAATATTATTTAActgta
aaattaaaaatttatcaacatctgctttgtaaaatatttttaattgtcAA
TCATAGATTTTTGACCAGGTTAAATATGAACGattttgttaaactttttt
tatatgcaAACTCAATGTATTATTTATTGAACTGATGATatattttattg
aaagaaaacttaTGAACATTACCTAATTTCAAAAACAA
Run BLAST on NCBI

protein sequence of TCONS_00000022-protein

>TCONS_00000022-protein ID=TCONS_00000022-protein|Name=TCONS_00000022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
FFIGVTDEPDNNTENLTCQSPRKSPHSNATGNQSHKKTMTSSSHSSTSSS
MTSSSSFSSLDDLASSHDSELERNKELMKEEYKRYLEDPNSTEISNAVLS
KSF
Run BLAST on NCBI

transcript from alignment at sc0000001:537567..542449+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000022 ID=TCONS_00000022|Name=TCONS_00000022|organism=Clytia hemisphaerica|type=transcript|length=4883bp|location=Sequence derived from alignment at sc0000001:537567..542449+ (Clytia hemisphaerica)
tatttttcataggtGTCACAGACGAACCAGACAACAATACCGAAAATCTA ACGTGCCAAAGTCCTCGTAAAAGTCCGCATTCCAACGCGACCGGCAACCA ATCTCATAagaaaacaatgacgtcatcaagtcaCTCCTCCACATCGtcat caatgacgtcatcttcaTCGTTCTCCTCCTTAGATGATTTAGCGAGTTCG CATGACAGCGAGTTGGAGAGGAATAAAGAGTTGATGAAAGAAGAGTATAA GAGATATTTGGAGGATCCGAATAGCACTGAAATAAGCAATGCAGTACTGT CAAAATCATTCTAATTGTATGGTCAAATAAACTAAGGCTTCGCACGATTG GAATATTTCGAGGACCCGAATAGCATTGAAATAAGCAATGCAGTACTGTC AAAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAG AATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCT AAATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGA ATATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTA AATCATTCTAATGGTATGATCAGATAAACTAAGGCTTCGCATATATAGAA TATTTTGATGACCCAAATAGCACTGGAATAAGCAATGCAGTACTGGCTAA ATCATTCTAATGGTATGGTCAAATAAACTAAAACTTCGCACGTATGGAAT ATTTAGAGGACCCGAATAACACAGAAAtaagaaaaatcattttaatggTC TAATAATGGTATGGTCAGATAAACTATATATGGAATATTCAGAGGATCCG AATGGCACAAAAATGAGAAATACAGCATTGTCAAAATCCTTTTGATTGGA ATCTTAAAGAGCTGTCATTCGGAGAGGAACAATTGCACCTGAAGACGCAG ATAATCCAGACCTGTAGAAAGTAGGTTCGACCACTAAAGAAAGAAACAAA CAGCGCAGAATTATTAAAATCGCCAGTTGATGGCGAACTATTCTTAGTAT TGGATCAAGCTCGACTAATTTTGGAACATCTGACACTTTCAATAAATCAG GCTTCCTTTTTTCAATAGTTCACGAAAATTTCTTTTAATGAAGTGCGTTT CTTTCACCGTGAATTTGTGTGTCGCCGAAAGAAAAATCTTATCCAAAATC ATTTTACCAATCACCTATAAAGAACCGgttaacccagctggcacacaatg ttgttttaacgttactccaacgttatatggacgttgcgaacgttagataa acgttgacacaacgttgtgtgccagctgggtaaggGTTGATAGGTGTTTT TGTCTAGAGAAGGTTTTTATGAATGTGATTTTGAAAGGTATGTATTGAAT TTAGAAAACCATTGACATTAGGGAGGTTAAGcatcaaagataaatctacG CGACGAACGGGCCTTTTCTCTGCAAGATGGTAAGGGTAGCAAAGTAGATG TTATATTCTTCTTTGTTTACAATGAAGATTTTCACGGTTTTTCGTTCTTG AGCtgttttagcctggattctagaaaatgcaggtccacatgtttactgca ggttgtTGGTCAAAACCCGTCCGTCGTCGCGCtgatttatctttgatact taACTTCCCTAATACCCCCTTAAGTAAAAATCCCGCACGAGCTAAAATCT TTAGCAGAAAAAGATTTCAGACACGTACGACTATTATCATACAGATAAGG CGTGTTAAAGGAATGGCCTCACTGCCACATTCNTCTCTACATAAAAATAG ACTGGCACgtcagtcgggctggaacggtatcacgcgggaaaagtgagcgt aggagttaggtaagcgtaggaagaaattttgtcggcggcgagGGCTGAAA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNtttgctcgctctcctacgcagctccta ttctagcaaacgcccgccgcctttatgttcccgccctctgacatgattaa tttacagactagtttgctagtctacatAAAAAGTGTGATTTAGACTCATG ATCGACATCATTatcttcaaaacatttttgtgtTATCTTTTGACGCCATA TATCCTATATACCGTGCctgaagaaagaaagaaatacaAAATTCTTAACT GGCGCATCGATAATATGCTTAATTTAACAATATTATTTAActgtaaaatt aaaaatttatcaacatctgctttgtaaaatatttttaattgtcAATCATA GATTTTTGACCAGGTTAAATATGAACGattttgttaaactttttttatat gcaAACTCAATGTATTATTTATTGAACTGATGATatattttattgaaaga aaacttaTGAACATTACCTAATTTCAAAAACAA

Coding sequence (CDS) from alignment at sc0000001:537567..542449+

>TCONS_00000022 ID=TCONS_00000022|Name=TCONS_00000022|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000001:537567..542449+ (Clytia hemisphaerica)
tttttcataggtGTCACAGACGAACCAGACAACAATACCGAAAATCTAAC
GTGCCAAAGTCCTCGTAAAAGTCCGCATTCCAACGCGACCGGCAACCAAT
CTCATAagaaaacaatgacgtcatcaagtcaCTCCTCCACATCGtcatca
atgacgtcatcttcaTCGTTCTCCTCCTTAGATGATTTAGCGAGTTCGCA
TGACAGCGAGTTGGAGAGGAATAAAGAGTTGATGAAAGAAGAGTATAAGA
GATATTTGGAGGATCCGAATAGCACTGAAATAAGCAATGCAGTACTGTCA
AAATCATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000012XLOC_000012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000022-exon-sc0000001-1491911889:537567..538766TCONS_00000022-exon-sc0000001-1491911889:537567..538766Clytia hemisphaericaexon
TCONS_00000022-exon-sc0000001-1510915933:537567..538766TCONS_00000022-exon-sc0000001-1510915933:537567..538766Clytia hemisphaericaexon
TCONS_00000022-exon-sc0000001-1491911889:542112..542449TCONS_00000022-exon-sc0000001-1491911889:542112..542449Clytia hemisphaericaexon
TCONS_00000022-exon-sc0000001-1510915933:542112..542449TCONS_00000022-exon-sc0000001-1510915933:542112..542449Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000022-proteinTCONS_00000022-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:537567..542449 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.15428 6.24765 3.65729 3.4598 24.8039 17.9788 14.7579 15.005 6.79362 8.69363 5.49027 5.61809 3.79937 3.4663 3.638 5.48205 4.66929 5.54586 3.91609 4.33546 4.12965 4.56994 10.4986 8.59859 5.81825 5.85771 3.11136 2.30484 6.93329 7.3658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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Spatial Expression
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