TCONS_00073721-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073721-protein
Unique NameTCONS_00073721-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1092

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073721-protein ID=TCONS_00073721-protein|Name=TCONS_00073721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1092bp
MSVKLGIKRIIDSCKSKDDVHFYKVEWNDCWLHQDVLTCWKELIENYKKT
QELKAQVKQENGELNNVNQESCTLCNLEPDTQSSPEAHTTNVHAAASSAQ
QISNMINKKSRDEKSFFLLSPNTVKLRTAKPTGEGIKRKDSGTITYSCWQ
CGMKFKSFKTFKLHQRAHEKENGEHLICITCKKRFTSLEALNKHKQLHTS
SLNFTTTTTDKVSNDSELSCKICQRKFTTKEALDVHTKLHVNLIRKFNAT
SLKEILNRSKKNFENRKTGSVSIVHRLNDIVQRLPIPKDPGSAGPSNNHL
NFPIDEAGRPAEGALAGVSEFTPEVLENARHYIKAVSKRRKEDTLRRIIE
NQTQEEPIKHSAHTIGVDVELNRSEESIPIIGKEGERYFYQCKLCTKKFY
NKFHHREHFNVHSGEMPYECEFCHKRFAQRSGWNRHIKLHHKYEVFEGPI
PYSHSERSDNPKVKRQKLEDNHLASAPTMVTTPLAVTPTVATQRFVPIAP
YPHNINVMQPMTSFPAGAIPLSPAILSPDRFPKNLENALPAGTVLIQAPP
PPGTVAGPLPPKTIQILQPAQMTPTVFVQPGPSLIPAQSSDQSQTVQMMN
SPIPTSEPVIDPKIMVAISKSHEGFAGSKTLRAEFSTGAKFQCKKVKTMD
GRVIFMIRVIDNGDLTTGISTSTSDTDRERKSEFAYILDPVGQVEARIFV
SDHPGGDWVDFPLDNIANGIMLERIQCYDDKNRRGPKPRHYNATGAPSSD
SSGGSKNILDDIHGKEVIEKALINHNGVLEVENSIEESVAKSLREEKAAK
DKNGSLVTHGRSFRSGKEKKFTCNVCSRKFLAQAHLNDHMLIHTGEFPYK
CMFCSRPFRHKSGLNSHHKRHIQNGVFDRPISCKEPNKKKPRNSTKTRTD
GANQATEGETSGQSSTTKSKRKGRPLKRKEAIPVTDLDQVMFKIXRPLKR
KEAIPVTDLDQVMFKIKEEDLEDSFMLDNEKRETVTFDVQDVFECNFCVL
TFPTRTAYLKHVNNVHKNPVTSPISNGDPLSDGEDGSGDPRYIQMSDFEN
TLLDMGAETQPSDPPSDAVDKISTFVDGMIPIDQIKEETPDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045776XLOC_045776Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073721TCONS_00073721Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
1002003004005006007008009001000SequenceCoilG3DSA:3.30.160.60G3DSA:3.30.160.60G3DSA:3.30.160.60G3DSA:3.30.160.60G3DSA:3.30.160.60G3DSA:2.20.28.30PF00096G3DSA:2.40.155.10SM00355PS00028PS00028PS00028PS00028PS00028PS00028PS00028PS50157PS50157PS50157PS50157PS50157PS50157PS50157SSF57667SSF57667SSF57667
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 40..70
NoneNo IPR availableGENE3D3.30.160.60coord: 797..832
e-value: 4.6E-8
score: 32.6
coord: 336..402
e-value: 1.7E-4
score: 21.1
NoneNo IPR availableGENE3D3.30.160.60coord: 403..446
e-value: 2.7E-12
score: 46.4
NoneNo IPR availableGENE3D3.30.160.60coord: 857..915
e-value: 5.7E-7
score: 28.9
NoneNo IPR availableGENE3D3.30.160.60coord: 229..264
e-value: 0.03
score: 13.9
NoneNo IPR availableGENE3D3.30.160.60coord: 188..228
e-value: 9.6E-8
score: 31.8
coord: 833..856
e-value: 1.5E-13
score: 50.4
coord: 69..156
e-value: 0.0045
score: 16.8
NoneNo IPR availableGENE3D2.20.28.30coord: 157..187
e-value: 4.9E-8
score: 32.7
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 418..440
e-value: 0.0096
score: 16.2
coord: 219..240
e-value: 0.012
score: 15.9
NoneNo IPR availableGENE3D2.40.155.10coord: 978..1047
e-value: 0.22
score: 11.0
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 218..240
e-value: 0.012
score: 24.9
coord: 146..168
e-value: 0.034
score: 23.3
coord: 176..198
e-value: 0.024
score: 23.8
coord: 993..1016
e-value: 0.013
score: 24.6
coord: 821..843
e-value: 0.0098
score: 25.1
coord: 390..412
e-value: 0.99
score: 18.4
coord: 418..440
e-value: 0.0024
score: 27.1
coord: 849..871
e-value: 0.08
score: 22.1
coord: 70..93
e-value: 240.0
score: 1.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 851..871
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 148..168
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 995..1016
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 392..412
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 823..843
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 178..198
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 220..240
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 218..240
score: 9.619
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 849..871
score: 10.699
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 821..848
score: 13.755
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 176..203
score: 9.889
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 390..417
score: 12.799
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 418..440
score: 10.679
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 146..173
score: 11.053
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 390..440
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 817..867
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 146..198

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073721-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
back to top