Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00073645-protein ID=TCONS_00073645-protein|Name=TCONS_00073645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0003676 nucleic acid binding GO:0005524 ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005524 ATP binding
molecular_function
GO:0003676 nucleic acid binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 550 Expect = 1.9E-31 / Score = 120.5 Expect = 1.4E-27 / Score = 96.1 Score = 22.31 Expect = 4.2E-39 / Score = 145.9 Score = 19.877 Expect = 2.8E-41 / Score = 140.9 Expect = 7.5E-44 / Score = 148.7 Score = Expect = 2.85156E-38 / Score = 136.214 Expect = 3.7E-13 / Score = 49.5 Expect = 1.8E-19 / Score = 70.1 Score = 9.09 Score = Score = Sequence SM00490 PF00271 PS51194 SM00487 PS51192 G3DSA:3.40.50.300 G3DSA:3.40.50.300 mobidb-lite cd00079 PF00270 PS51195 SSF52540 SSF52540
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001650 Helicase, C-terminal SMART SM00490 helicmild6 coord: 447..528 IPR001650 Helicase, C-terminal PFAM PF00271 Helicase_C coord: 423..528 IPR001650 Helicase, C-terminal PROSITE PS51194 HELICASE_CTER coord: 423..566 IPR014001 Helicase superfamily 1/2, ATP-binding domain SMART SM00487 ultradead3 coord: 80..411 IPR014001 Helicase superfamily 1/2, ATP-binding domain PROSITE PS51192 HELICASE_ATP_BIND_1 coord: 92..396 None No IPR available GENE3D 3.40.50.300 coord: 60..406 None No IPR available GENE3D 3.40.50.300 coord: 407..564 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 19..61 None No IPR available CDD cd00079 HELICc coord: 407..536 IPR011545 DEAD/DEAH box helicase domain PFAM PF00270 DEAD coord: 268..384 IPR014014 RNA helicase, DEAD-box type, Q motif PROSITE PS51195 Q_MOTIF coord: 60..89 IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY 52540 P-loop containing nucleoside triphosphate hydrolases coord: 273..539 IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY 52540 P-loop containing nucleoside triphosphate hydrolases coord: 44..174
Blast
BLAST of TCONS_00073645-protein vs. Swiss-Prot (Human)
Match:
DDX41 (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)
HSP 1 Score: 200.29 bits (508), Expect = 2.362e-56
Identity = 101/251 (40.24%), Postives = 153/251 (60.96%), Query Frame = 0
Query: 311 VVIATPGRLLDLCSRNVLSLDGVRYFVIDECDRILDMGMEEQLRQIVAKMTINSNHDDIRTSLWSATLPESLERIARSAVIHPIYVCCGIKNSVPRNIQQDVRFLHTYQKREVLLDVLRQIPYPPVLVFTSSKDKVDDVTEFLQGEQFHAAALHSGYPQDYRNNVITSFRSDEIDILVATDLASRGLDVPTITHIINYDTPDTIEDYIHRVGRTGRFGRAGNVTTFLTLDC--KIANELKELLECSNCDVP 559
+++ATPGRL+DL + ++SLD RY +DE DR++DMG E +R I + +T L+SAT+P+ ++ A+SA++ P+ + G + ++ Q+V ++ K LL+ L++ P PPVL+F K VD + E+L + A A+H G Q+ R I +FR + D+LVATD+AS+GLD P I H+INYD P+ IE+Y+HR+GRTGR G G TTF+ C + +LK LL + VP
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR-----QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 560 HSP 2 Score: 82.8037 bits (203), Expect = 1.259e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 0
Query: 42 VRSRHGIEIEGDNVPDPISSFDEMEIPQALKIFLKRVKKISKPTPIQMQSTSCLQNQRDIICLSATGTGKTYGYLLPLCSFLWKRHNNIHHQAQQNQQTSQPLCLIIVPTRELVNQVLAI 161
VR ++ I +EGD +P PI SF EM+ P A+ LK+ K I PTPIQ+Q + + RD+I ++ TG+GKT + LP+ F ++ + ++ P LII P+REL Q I
Sbjct: 163 VRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKK-KGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREG-----PYGLIICPSRELARQTHGI 276
The following BLAST results are available for this feature:
