TCONS_00073591-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073591-protein
Unique Name	TCONS_00073591-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	497

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073591-protein ID=TCONS_00073591-protein|Name=TCONS_00073591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
IVAGMNNGQAVQVTVKNGQIVNQQLQQRQNNTMVQQSQTNNTATNPQQQL
QFQIAQQQQNNQQQSNTQQNIQQLSNFITNANNPQLVMASSSGQNLTLQQ
KAQVAKALQLQQQQKANELQLIQQRLRQQAQPNIGFNNMGNIDQQQQQQQ
QNMSNNQPQPNATQPLPNNMLQQQQQQQAQQNKIINTPSPSQQMQPSPAA
YNQPVPSPANPLSSIGPSPSPLNSTDEMLYQEKLVNLRKYVEPLNKMLQK
TPKDEEHHKEREKLRGLLDILTNSRRRVKLQILTQCEAVLKRLIPSTPNS
AGPTSMKTPEPFDVSVNTPARPAGLQPMGEVVTNVITSANLMAETRQNIL
PGMYALNVPMISPPAPPVRNRARPKPYEQPKKTISLPRALQMEIVNLTSN
RFSISLDKTKPMDSEGMTIRCKYNNDLVASHLGTLLIQVSSGYPRTEPSF
SFLDTTQPSTQDLSSRMTKKLSRLPHTLTFTAILLSWEQSLVDCFGS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045692	XLOC_045692	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073591	TCONS_00073591	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019087	Med15
IPR015943	WD40/YVTN_repeat-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..225
IPR019087	Mediator of RNA polymerase II transcription subunit 15	PFAM	PF09606	Med15	coord: 187..490 e-value: 2.4E-32 score: 112.5
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 91..486 e-value: 2.1E-8 score: 32.7

Blast

[Close]

BLAST of TCONS_00073591-protein vs. Swiss-Prot (Human)
Match: MED15 (Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens GN=MED15 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.385e-21
Identity = 88/299 (29.43%), Postives = 140/299 (46.82%), Query Frame = 0

Query:  196 PSPAAYNQPVPSPANPLSSIGPSPSPLNSTDEMLYQEKLVNLRKYVEPLNKMLQKTPKDEEHHKEREKLRGLLDILTNSRRRVKLQILTQCEAVLKRLIPSTPNSAGPTSMKTPEPFDVSVNTPARPAGLQPMGEVVTNVITSANLMAETRQNILPGMYALNVPMISPPAPPVRNRARPKPYEQPKKTISLPRALQMEIVNLTSNRFSISLDKTKPMDSEGMTIRCKYNNDLVASHLGTLLIQVSSGYPRTEPSF---SFLDTTQPSTQDLSSRMTKKLSRLPHTLTFTAILLSWEQSL 491
            PSP   N PV    NP S + P+ S  +  +E  Y +KL  L KY+EPL +M+ K  K+E+  K+  K++ LLDILT+  +R  L+ L +CE  L++L            M  P P    V    +    QP+ + V   I S        +  +P M A++ P I+ P    R R       Q     S+P  LQ E+  L   +F ++LD +   ++  + + CK ++  + S +  L + V + YP   P +    +     P  Q +   MT +L +LP   + TA+L +W QS+
Sbjct:  504 PSPGPLNTPV----NPSSVMSPAGS--SQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKL---------KNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQ-----SIPSVLQGEVARLDP-KFLVNLDPSHCSNNGTVHLICKLDDKDLPS-VPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSV 780

The following BLAST results are available for this feature:

BLAST of TCONS_00073591-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073591-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
MED15	3.385e-21	29.43	Mediator of RNA polymerase II transcription subuni...	[more]

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TCONS_00073591-protein (polypeptide) - C. hemisphaerica

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