TCONS_00073591-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073591-protein
Unique NameTCONS_00073591-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073591-protein ID=TCONS_00073591-protein|Name=TCONS_00073591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
IVAGMNNGQAVQVTVKNGQIVNQQLQQRQNNTMVQQSQTNNTATNPQQQL
QFQIAQQQQNNQQQSNTQQNIQQLSNFITNANNPQLVMASSSGQNLTLQQ
KAQVAKALQLQQQQKANELQLIQQRLRQQAQPNIGFNNMGNIDQQQQQQQ
QNMSNNQPQPNATQPLPNNMLQQQQQQQAQQNKIINTPSPSQQMQPSPAA
YNQPVPSPANPLSSIGPSPSPLNSTDEMLYQEKLVNLRKYVEPLNKMLQK
TPKDEEHHKEREKLRGLLDILTNSRRRVKLQILTQCEAVLKRLIPSTPNS
AGPTSMKTPEPFDVSVNTPARPAGLQPMGEVVTNVITSANLMAETRQNIL
PGMYALNVPMISPPAPPVRNRARPKPYEQPKKTISLPRALQMEIVNLTSN
RFSISLDKTKPMDSEGMTIRCKYNNDLVASHLGTLLIQVSSGYPRTEPSF
SFLDTTQPSTQDLSSRMTKKLSRLPHTLTFTAILLSWEQSLVDCFGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045692XLOC_045692Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073591TCONS_00073591Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019087Med15
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0005515 protein binding
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..225
IPR019087Mediator of RNA polymerase II transcription subunit 15PFAMPF09606Med15coord: 187..490
e-value: 2.4E-32
score: 112.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 91..486
e-value: 2.1E-8
score: 32.7

Blast
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BLAST of TCONS_00073591-protein vs. Swiss-Prot (Human)
Match: MED15 (Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens GN=MED15 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.385e-21
Identity = 88/299 (29.43%), Postives = 140/299 (46.82%), Query Frame = 0 
Query:  196 PSPAAYNQPVPSPANPLSSIGPSPSPLNSTDEMLYQEKLVNLRKYVEPLNKMLQKTPKDEEHHKEREKLRGLLDILTNSRRRVKLQILTQCEAVLKRLIPSTPNSAGPTSMKTPEPFDVSVNTPARPAGLQPMGEVVTNVITSANLMAETRQNILPGMYALNVPMISPPAPPVRNRARPKPYEQPKKTISLPRALQMEIVNLTSNRFSISLDKTKPMDSEGMTIRCKYNNDLVASHLGTLLIQVSSGYPRTEPSF---SFLDTTQPSTQDLSSRMTKKLSRLPHTLTFTAILLSWEQSL 491
            PSP   N PV    NP S + P+ S  +  +E  Y +KL  L KY+EPL +M+ K  K+E+  K+  K++ LLDILT+  +R  L+ L +CE  L++L            M  P P    V    +    QP+ + V   I S        +  +P M A++ P I+ P    R R       Q     S+P  LQ E+  L   +F ++LD +   ++  + + CK ++  + S +  L + V + YP   P +    +     P  Q +   MT +L +LP   + TA+L +W QS+
Sbjct:  504 PSPGPLNTPV----NPSSVMSPAGS--SQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKL---------KNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQ-----SIPSVLQGEVARLDP-KFLVNLDPSHCSNNGTVHLICKLDDKDLPS-VPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSV 780
The following BLAST results are available for this feature:
BLAST of TCONS_00073591-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED153.385e-2129.43Mediator of RNA polymerase II transcription subuni... [more]
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