TCONS_00073530-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073530-protein
Unique Name	TCONS_00073530-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	654

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073530-protein ID=TCONS_00073530-protein|Name=TCONS_00073530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp
QWIDALKAVARMPGGIPAEWRKRTWLSLAEFFLKDIEWEGIKKTCFNDRR
NPDDDELDTQIVKDLHRTGCGWFFEHDTAEDRASLKRVLLAYARWNKQIG
YCQGFNVIAALILQVMEGNEEHALKVMIFLVDYVLPRNYFSNNLRALSVD
MAVLRDLMQMKLGYLANRLQQLQKEAMDGSKNTSASYEPPLINMFTMQWF
LTLFATCLPRNTVLRIWDAVLLEGSEVLLRVALALWAKLGSFFDEVETAA
DFYMTMGKLIQELITDEFILVQKLMQAVYQMASFPWVELTELREKYTYDI
HPFTTFREEKKREKLKLQRQMNKPPSDEEEYDDVNDDDVMVGCLGFVAGS
SDTPHLMLSSPNKHNKNTNSNLHSAQSNSSSKNAKSSAQHVSSKQRRSRQ
DVASKNDITKVTPGAYITDQEARNAYKEQMRAKELMRETEKLDVNKLRNQ
YGRMRRLQQKAMLVFNADDFKDESYKVKNPPSAINHLFVDVNNVVAPPRA
RYRKPSNFPALKTLGKGGPPAPPRPIKESPKVVHESTSSKGEGETKTSLK
KQDSFSITNPYVMLEVQGNGDESDAINDPDAHAHIMKKTAPTNKIRSAPT
NQLSAPTKKDSNLSSELNSVSPLYKVDKSALYPTNFKPFPKRNIGKRSNF
SSKT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045639	XLOC_045639	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073530	TCONS_00073530	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	SMART	SM00164	tbc_4	coord: 12..247 e-value: 1.0E-29 score: 114.7
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 39..235 e-value: 2.7E-34 score: 118.6
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 15..224 score: 29.215
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 11..162
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 144..235
None	No IPR available	GENE3D	1.10.8.270		coord: 22..132 e-value: 1.0E-16 score: 60.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 632..654
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 354..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 568..617
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 500..553
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 314..334

Blast

[Close]

BLAST of TCONS_00073530-protein vs. Swiss-Prot (Human)
Match: TBC30 (TBC1 domain family member 30 OS=Homo sapiens GN=TBC1D30 PE=1 SV=2)

HSP 1 Score: 410.609 bits (1054), Expect = 6.345e-132
Identity = 216/457 (47.26%), Postives = 284/457 (62.14%), Query Frame = 0

Query:    1 QWIDALKAVARMPGGIPAEWRKRTWLSLAEFFLKDI--EWEGIKKTCFNDRRNPDDDELDTQIVKDLHRTGCGWFFEHDTAEDRASLKRVLLAYARWNKQIGYCQGFNVIAALILQVMEGNEEHALKVMIFLVDYVLPRNYFSNNLRALSVDMAVLRDLMQMKLGYLANRLQQLQKEAMDGSKNTSASYEPPLINMFTMQWFLTLFATCLPRNTVLRIWDAVLLEGSEVLLRVALALWAKLGSFFDEVETAADFYMTMGKLIQELITDEFILVQKLMQAVYQMASFPWVELTELREKYTYDIHPF-TTFREEKKREKLKLQRQMNKPPSDEEEYDDVNDDDVMVGCLGFVAGSSDTPHLMLSSPNKHNKNTNSNLHSAQSNSSSKNAKSSAQHVSSKQRRSRQDVASKNDITKVTPGAYITDQEARNAYKEQMRAKELMRETEKLDVNKLRNQYGRM 454
            QW DALKAVAR+  GIP EWR++ WL+LA+ +L  I  +W+   +  FN+R NPDDD +  QIVKDLHRTGC  +   +  +DR  LKRVLLAYARWNK +GYCQGFN++AALIL+VMEGNE  ALK+MI+L+D VLP +YF NNLRALSVDMAV RDL++MKL  L+  L  LQ+ A   +K +   YEPPL N+FTMQWFLTLFATCLP  TVL+IWD+V  EGSE++LRV+LA+WAKLG   +  ETA +FY TMG+L QE++ ++ +   +LMQ VY MA FP+ +L ELREKYTY+I PF  T +      +    R  ++    ++E   VN     VGCLG  +G       +     K+ K                           K+    Q + S N+I +++PGA       R+ Y     +  +M E    D+N L+ QY R+
Sbjct:  235 QWYDALKAVARLSTGIPKEWRRKVWLTLADHYLHSIAIDWDKTMRFTFNERSNPDDDSMGIQIVKDLHRTGCSSYCGQEAEQDRVVLKRVLLAYARWNKTVGYCQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPESYFVNNLRALSVDMAVFRDLLRMKLPELSQHLDTLQRTA---NKESGGGYEPPLTNVFTMQWFLTLFATCLPNQTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYSTMGRLTQEMLENDLLQSHELMQTVYSMAPFPFPQLAELREKYTYNITPFPATVKPTSVSGRHSKARDSDEENDPDDEDAVVN----AVGCLGPFSG------FLAPELQKYQKQI-------------------------KEPNEEQSLRS-NNIAELSPGAI---NSCRSEYHAAFNS--MMMERMTTDINALKRQYSRI 647

The following BLAST results are available for this feature:

BLAST of TCONS_00073530-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073530-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBC30	6.345e-132	47.26	TBC1 domain family member 30 OS=Homo sapiens GN=TB...	[more]

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TCONS_00073530-protein (polypeptide) - C. hemisphaerica