TCONS_00073516-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073516-protein
Unique Name	TCONS_00073516-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	493

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073516-protein ID=TCONS_00073516-protein|Name=TCONS_00073516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MINSTPSLNRFSNVSWTQIGHLNNTGNNISHRNNGSTIYNTTGIDFGLIA
SRFFSTPTYISQELKCCVTELFDGVDINILKSMDAMKEYMAPCSHHHNDT
NVYVSDVFKFYLKSNHTKEMMECKSFHCGPQVQVTSTFAVYITILVLTFL
IGVLGNSLVCAVIIKSNTLRKRATNYFLLSLAIGDLLSGLVIIPIKIFTY
SKNGKFCMGQEMCRMYRNIDPFIFTTSITHLLVICIDRFIAIDKPFYYPR
LFSFKNIKIMLSSIWVYALSWGFMNNVNWSTLQLQGTFQIKGYRCLRTRD
QFSAYLYMIVFVVPCLIMALLYGRMWHIAMAHAKEIRKRYNNYSSQASLD
KVAAHSTKKFIAARLLELKATKVICVVFGTFVVCWVPLIILVVIDTFITK
VTLEGVPYKIVVEYLPLLNSSLNPFIYCFFHKDFQKGLKHILQRMAYTTA
LKLSLNKKRNGNELNSTCVGTSMLANDNLADSISLNNHSETCV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045630	XLOC_045630	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073516	TCONS_00073516	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 409..435 score: 30.7 coord: 140..164 score: 28.91 coord: 174..195 score: 37.58 coord: 303..326 score: 24.2 coord: 370..394 score: 27.93 coord: 220..242 score: 31.33
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 155..427 e-value: 8.2E-45 score: 153.0
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 226..242
None	No IPR available	GENE3D	1.20.1070.10		coord: 108..486 e-value: 7.0E-62 score: 208.7
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 113..445
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 155..427 score: 36.801

Blast

[Close]

BLAST of TCONS_00073516-protein vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.423e-32
Identity = 94/316 (29.75%), Postives = 149/316 (47.15%), Query Frame = 0

Query:  140 VYITILVLTFLIGVLGNSLVCAVIIKSNTLRKRATNYFLLSLAIGDLLSGLVIIPIKIFTYSKNGKFCMGQEMCRMYRNIDPFIFTTSITHLLVICIDRFIAI-DKPFYYPRLFSFKNIKIMLSSIWVYALSWGFM------NNVNWSTLQLQGTFQIKG---YRCLRTRDQFSAYLYMIVFVVPCLIMALLYGRMWHIAMAHAKEIRK-RYNNYSSQASLDKVAAHSTKKFIAARLLELKATKVICVVFGTFVVCWVPLIILVVIDTFITKVTLEGVPYKIVVEYLPL--LNSSLNPFIYCFFHKDFQKGLKHIL 442
            V +T L    L+ +LGN LV   +     LRK  TNYF++SLA  DLL  ++++P       ++  +  G+  C +  ++D  + T SI HL  I +DR+ AI  +P  Y    +   I +ML   WV      F+      NN+    L  +  F       Y        ++    ++ F +P L+M L Y R++  A  HA +I+  +    SS++       HST +       E KA K +C++ G F +CW P  +  ++D FI       VP ++   +L L  +NS LNPF+Y F +K F++    IL
Sbjct:   21 VLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQD-IWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRT----ETKAAKTLCIIMGCFCLCWAPFFVTNIVDPFIDYT----VPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAFLIIL 327

The following BLAST results are available for this feature:

BLAST of TCONS_00073516-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073516-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
5HT4R	2.423e-32	29.75	5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=...	[more]

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TCONS_00073516-protein (polypeptide) - C. hemisphaerica