TCONS_00073484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073484-protein
Unique NameTCONS_00073484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073484-protein ID=TCONS_00073484-protein|Name=TCONS_00073484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MAYFSLGILFLLIPFVAASVCNSGCQRTFKKLGCFAFQEETTPNLLITDL
VANEFTSSGILIDQSKDLEASILSLLCRCLTKTKAMGYTIFGLTNRGQCH
AGNQETKLNKLAKDGRFAPPLACSNTNKGLCNVLNETENCFGKDMHSFYY
QVMKTVDGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPS
VEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGG
KKCSGPSSETKACNTQPCPAPWTCQQKTTQWDVDGNGDARYFDRHQLKCP
SATAINLLRLERDSTLTKYRFVYKCCSIGATACNSTKLTRNSFSYDGTGS
ARYLDRQYVECNKHLISSLRLETNLLNFQGDKIRYVYNCCQAPNQHRTCY
SAMTKFSDDGGGSAIYLDRQKIECNREFSLSAFRLVRDTNTMKHWSYKYT
CCKTTPKSLVKTVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045611XLOC_045611Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073484TCONS_00073484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 158..171
score: 33.48
coord: 233..244
score: 47.25
coord: 252..263
score: 38.84
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 217..269
e-value: 2.1E-15
score: 67.1
coord: 160..212
e-value: 1.5E-10
score: 51.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 156..211
e-value: 1.0E-14
score: 54.0
coord: 213..268
e-value: 1.0E-17
score: 63.7
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 162..211
e-value: 3.5E-9
score: 36.6
coord: 219..268
e-value: 7.1E-11
score: 42.1
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 157..212
score: 12.258
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 214..269
score: 13.96
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 211..268
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 156..207

Blast
[Close]
BLAST of TCONS_00073484-protein vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 2.190e-31
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 0 
Query:  155 TVDGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPSVEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQPCPAPWT 273
            TV+G W +W+ +++C+  C +  + R+R C+ P+P YGG  C GPS+E QEC++  CP DG ++ WS ++ C+ +CGGG   RTRSC+ P P  GG  C G  +E   CNTQPCP  W+
Sbjct:  782 TVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQPCPESWS 900

HSP 2 Score: 105.916 bits (263), Expect = 3.635e-24
Identity = 68/192 (35.42%), Postives = 98/192 (51.04%), Query Frame = 0 
Query:  157 DGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPSVEVQEC--HLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQPCPAPWTCQQKTTQW------DVDGNGDARYFDRHQLKCPSATA-INLLRLERDSTLTKYRFVYKCCSIGATACNSTKLT 339
            +G W  W+ ++ C+TTCG  F+ RQRSC  P P +GG++C G + E + C  HL  CP    +T W  +  CT  CGGG+Q+R R C        G  C+G + E ++CNT PCP      +KTT W      ++  NG   Y  R +  C +  A  NLL + R     +Y     C S G + C++  L+
Sbjct:  595 NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLL-CPPHMFWTGWGPWERCTAQCGGGIQARRRIC------ENGPDCAGCNVEYQSCNTNPCPE----LKKTTPWTPWTPVNISDNG-GHYEQRFRYTCKARLADPNLLEVGRQRIEMRY-----CSSDGTSGCSTDGLS 769

HSP 3 Score: 100.138 bits (248), Expect = 2.445e-22
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:  155 TVDGQWGSWSLFTKCNTTCGKAFKT---RQRSCDQPKPLYGGKMCQGPSVEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQ 266
            TVDG +G WS +T C  T G A  +   R RSCD P P  GG  C+GP +E+       C R+GG+T W+++S C+ +CG G Q R RSC+ P P +GG+ C G + E + CN  
Sbjct:  538 TVDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPGMEI-----ANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEH 647
The following BLAST results are available for this feature:
BLAST of TCONS_00073484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A2.190e-3145.38Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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