TCONS_00073326-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073326-protein
Unique NameTCONS_00073326-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length148

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073326-protein ID=TCONS_00073326-protein|Name=TCONS_00073326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
GRLLRSNILQPPCDISTITQRYDCVTELTEKEGLFRNLQTVLSRFLDVDQ
LISCLVQIPKKKDLRVFEKKIADSISLKHVIELIPTLQEALKDSENGLFK
AYYQSLSDPRYENILEEIGTVIHDETHYHKGTLNMRTQKLFSVKVYWM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045491XLOC_045491Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073326TCONS_00073326Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 2..132
e-value: 6.7E-14
score: 52.4
IPR007696DNA mismatch repair protein MutS, coreSUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 1..130
NoneNo IPR availableGENE3D1.10.1420.10coord: 1..123
e-value: 1.1E-20
score: 73.8

Blast
BLAST of TCONS_00073326-protein vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.720e-42
Identity = 77/144 (53.47%), Postives = 99/144 (68.75%), Query Frame = 0
Query:    1 GRLLRSNILQPPCDISTITQRYDCVTELTEKEGLFRNLQTVLSRFLDVDQLISCLVQIPKKKDLRVFEKKIADSISLKHVIELIPTLQEALKDSENGLFKAYYQSLSDPRYENILEEIGTVIHDETHYHKGTLNMRTQKLFSVK 144
             R LRSNIL+P  DI TI  R DCV EL + E LF  LQ+V+SRFLD +QL+S LVQIPK+  +   E KI + I LKH +EL+  L+ A+K+    L +AYY SL D R+  ILE+I TVI+D+  Y KG LNMRTQK ++V+
Sbjct:  348 SRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSLEDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAVR 491          
The following BLAST results are available for this feature:
BLAST of TCONS_00073326-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH42.720e-4253.47MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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