TCONS_00073255-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073255-protein
Unique NameTCONS_00073255-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073255-protein ID=TCONS_00073255-protein|Name=TCONS_00073255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
TSVCPISTGIAGTLSYLSVKFVQEWGVYSNLTADSYAIVPAGIIMAVAII
VFVSSIVGFCGVHYENRCTLGAFVSLLTFLMILEVVSGCLTYAWKDNIDN
DLHTNLKKSFDAYYDKKLTTQSAFDYMQRHLKCCGVDSSNDWNTKNSTFP
YHQIPTSCCVHDTGTDCSQYEKNIFKKGCYTQVLENFHRILRYITGIVIS
FAVFQLIGIMMSAYLIVVLKKNGYIRMVDHANRTGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045447XLOC_045447Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073255TCONS_00073255Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 37..63
score: 19.23
coord: 193..219
score: 23.72
coord: 64..92
score: 29.64
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 15..233
e-value: 2.6E-39
score: 132.7
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 92..190
e-value: 2.8E-17
score: 62.4
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 92..188
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 32..216
e-value: 3.3E-40
score: 138.2
NoneNo IPR availableCDDcd03127tetraspanin_LELcoord: 92..191
e-value: 7.61635E-20
score: 80.241

Blast
BLAST of TCONS_00073255-protein vs. Swiss-Prot (Human)
Match: TSN3 (Tetraspanin-3 OS=Homo sapiens GN=TSPAN3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.469e-26
Identity = 61/213 (28.64%), Postives = 112/213 (52.58%), Query Frame = 0
Query:    9 GIAGTLSYLSVKFVQEWGVYSNLTADSYAIVPAGIIMAVAIIVFVSSIVGFCGVHYENRCTLGAFVSLLTFLMILEVVSGCLTYAWKDNIDNDLHTNLKKSFDAYYDKKLTTQS-AFDYMQRHLKCCGVDSSNDW-------NTKNSTFPYHQIPTSCCVHDTGTDCS---QYEKNIFKKGCYTQVLENFHRILRYITGIVISFAVFQLIGIM 210
            G AG L Y+       +  Y +   D Y ++PA +I+AV  ++F+  ++G C    E+RC L  FV +L  + + EVV   L Y ++  ++N++  +++K +  Y        S A DY+QR L CCG+ + +DW        TKN +     +P SCC  +T ++C+    +  +++ +GC   V++    I+ ++    ++FA  QL+G++
Sbjct:   22 GAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQS-----VPLSCC-RETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGML 228          
The following BLAST results are available for this feature:
BLAST of TCONS_00073255-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN32.469e-2628.64Tetraspanin-3 OS=Homo sapiens GN=TSPAN3 PE=2 SV=1[more]
back to top