TCONS_00073228-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073228-protein
Unique NameTCONS_00073228-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073228-protein ID=TCONS_00073228-protein|Name=TCONS_00073228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
METLIKYVAGLLVAKYGLDFVLFFMRMIKLYLLPNLGLGLKLKKYGSWAV
VTGATDGIGKAIAKQLAKRGINLVLISRSEEKLKATAQEIGGKVDVKTIS
YDFSNPDGYSKIETELKNLDIGLLVNNVGMGYDHPDFYLHYDEQYFDKMI
DINVTSVLKMTRIVLDGMVQRKKGLLVHVSSASSLMPIPFLSGYSASKSF
VNNFGESLHYEYMAKGIKSQVVFPYFVATKMSKMRSNGFLVPSADQYACQ
MVNAIGLTPTMAGYWAHELFLAVSTLLPRWLVIGQTRKMMDATRRRWEKK
QQAKKD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045424XLOC_045424Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073228TCONS_00073228Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00080SDRFAMILYcoord: 119..130
score: 37.47
coord: 174..182
score: 33.86
coord: 194..213
score: 34.26
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 194..213
score: 29.87
coord: 48..65
score: 47.88
coord: 168..184
score: 25.32
coord: 119..130
score: 35.66
coord: 215..232
score: 28.17
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 48..234
e-value: 2.6E-44
score: 151.0
NoneNo IPR availablePIRSFPIRSF00012611-beta-HSD1coord: 2..300
e-value: 6.9E-93
score: 308.8
NoneNo IPR availableGENE3D3.40.50.720coord: 43..306
e-value: 3.6E-43
score: 147.0
NoneNo IPR availableCDDcd0535617beta-HSD1_like_SDR_ccoord: 46..281
e-value: 6.43185E-107
score: 313.001
IPR020904Short-chain dehydrogenase/reductase, conserved sitePROSITEPS00061ADH_SHORTcoord: 181..209
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 46..289

Blast
[Close]
BLAST of TCONS_00073228-protein vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 2.751e-75
Identity = 117/261 (44.83%), Postives = 174/261 (66.67%), Query Frame = 0 
Query:   46 GSWAVVTGATDGIGKAIAKQLAKRGINLVLISRSEEKLKATAQEIGGK--VDVKTISYDFSNPDGYSKIETELKNLDIGLLVNNVGMGYDHPDFYLHYDE--QYFDKMIDINVTSVLKMTRIVLDGMVQRKKGLLVHVSSASSLMPIPFLSGYSASKSFVNNFGESLHYEYMAKGIKSQVVFPYFVATKMSKMRSNGFLVPSADQYACQMVNAIGLTPTMAGYWAHELFLAVSTLLPRWLVIGQTRKMMDATRRRWEKKQQ 302
            G WAVVTG+TDGIGK+ A++LAK G+ +VLISRS++KL   + EI  K  V+ +TI+ DF++ D Y KI+T L  L+IG+LVNNVGM Y++P+++L   +      KMI+IN+ SV KMT++VL GMV+R KG ++++SS S ++P+P L+ YSA+K+FV+ F + LH EY +KG+  Q V PYFVATK++K+R      PS + +    +  +GL     GY  H L  ++ + LP W+ +     M  +TR  + KK +
Sbjct:   50 GEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIYLKIVMNMNKSTRAHYLKKTK 310
The following BLAST results are available for this feature:
BLAST of TCONS_00073228-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB122.751e-7544.83Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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