TCONS_00073219-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073219-protein
Unique NameTCONS_00073219-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073219-protein ID=TCONS_00073219-protein|Name=TCONS_00073219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MMIKFALLTFFVSSSFADTLDCGGSAGSVKIAGCYKKPAGLFNKILIRRP
IYQEGSIKNLACDCIAKAKKEGSKAIALGDYEECRGTTDTAKLSSFLKDN
SQVSNKCFNANYQSCTKGSHCMGEAGIVYIYSTAVDGGWGDWSSYGGCSK
TCGGGKKIRTRKCDRPKPQNGGANCVGISSQATSCNTKTCAVNGNWGRWS
SYGGCSKTCGGGSRTRTRRCDSPKPQNGGASCKGSSTQSGRCNIQKCLPN
EACTWAYTNWNDDGKGGAVYLDRHDVRCNNGQYIKYMKLERKKAGWFNYQ
IRYKYICCQNMASCSSVTHSTLDTYNGGFQGNAVYFDRQTVSCGRNALQR
VKLVRHGNNIRYDFTCCKKTDSTLTTSCYASNTGFNDDGRGNAAYLDRHA
ISCSNNYYLTYFHLKRNSAHNKYRYDYQCCKINPPSPRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045419XLOC_045419Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073219TCONS_00073219Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 137..150
score: 42.98
coord: 231..242
score: 29.99
coord: 212..223
score: 46.43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..240
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 196..248
e-value: 6.5E-11
score: 52.3
coord: 139..191
e-value: 6.8E-13
score: 58.8
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 140..190
e-value: 2.3E-8
score: 34.0
coord: 198..247
e-value: 5.4E-10
score: 39.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 135..190
e-value: 7.1E-15
score: 54.6
coord: 192..247
e-value: 9.2E-15
score: 54.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 136..191
score: 12.68
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 193..248
score: 13.109
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 192..244
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 135..187

Blast
BLAST of TCONS_00073219-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.705e-36
Identity = 58/111 (52.25%), Postives = 68/111 (61.26%), Query Frame = 0
Query:  137 GGWGDWSSYGGCSKTCGGGKKIRTRKCDRPKPQNGGANCVGISSQATSCNTKTCAVNGNWGRWSSYGGCSKTCGGGSRTRTRRCDSPKPQNGGASCKGSSTQSGRCNIQKC 247
            G W  WS +G CS+TC GG+  R R CD P P NGG  C G  SQ   CNT  C V+G+WG W S+  CS +CGGG +TR R CD P P  GG  C G +TQ  RCN+Q C
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 2 Score: 134.42 bits (337), Expect = 1.382e-33
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 0
Query:  118 GSHCMGEAGIVYI---YSTAVDGGWGDWSSYGGCSKTCGGGKKIRTRKCDRPKPQNGGANCVGISSQATSCNTKTCAVNGNWGRWSSYGGCSKTCGGGSRTRTRRCDSPKPQNGGASCKGSSTQSGRCNIQKCLPNEACTWAYTNWN 261
            GS+C G    + +    +  + G W  W+S+  CS +CGGG + RTR C  P PQ GG  C G   Q+  CN+  C  +GNW  WS +G CS+TC GG   R R CD+P P NGG +C G  +Q  RCN   C P +    ++ +W+
Sbjct: 4679 GSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC-PVDGSWGSWHSWS 4824          

HSP 3 Score: 132.88 bits (333), Expect = 4.252e-33
Identity = 67/192 (34.90%), Postives = 90/192 (46.88%), Query Frame = 0
Query:   98 KDNSQVSNKCFNANYQSCTKGSHCMGEAG---IVYIYSTAVDGGWGDWSSYGGCSKTCGGGKKIRTRKCDRPKPQNGGANCVGISSQATSCNTKTCAVNGNWGRWSSYGGCSKTCGGGSRTRTRRCDSPKPQNGGASCKGSSTQSGRCNIQKCLPNEACTWAYTNWNDDGKGGAVYLDRHDVRCNNGQYIKY 286
            + N   +  C N + Q    G  C G A    +  I    V G W  W  +G CS++CG G + R R C+ P P  GG+ C G  +Q   CN + C ++G W  W+S+  CS +CGGG+R RTR C  P PQ GG  C+GS  QS  CN   C P       ++ W    +            CN GQ  +Y
Sbjct: 4604 RGNQTRTRTCNNPSVQH--GGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC-PTHGNWSPWSGWGTCSR-----------TCNGGQMRRY 4781          

HSP 4 Score: 124.02 bits (310), Expect = 3.408e-30
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 0
Query:  135 VDGGWGDWSSYGGCSKTCGGGKKIRTRKCDRPKPQNGGANCVGISSQATSCNTKTCAVNGNWGRWSSYGGCSKTCGGGSRTRTRRCDSPKPQNGGASCKGSSTQSGRCNIQKC-LPNEACTWA 256
            VDG W +WS +  C+++CG G + RTR C+ P  Q+GG  C G + +   CN + C V+G W  W  +G CS++CG G++TR R C++P P  GG+ C G+ TQ   CN + C +  +  TWA
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWA 4707          

HSP 5 Score: 119.783 bits (299), Expect = 1.024e-28
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 0
Query:  135 VDGGWGDWSSYGGCSKTCGGGKKIRTRKCDRPKPQNGGANCVGISSQATSCNTKTCAVNGNWGRWSSYGGCSKTCGGGSRTRTRRCDSPKPQNGGASCKGSSTQSGRCNIQKCLPNEACTWAYTNW 260
            V GG+  WS++  CS TCG G + R+R C++P P NGG  C G   +  +C  K C V+G+W  WS +  C+++CG G++TRTR C++P  Q+GG  C+G++ +   CNI+ C P      A+  W
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC-PVHGAWSAWQPW 4652          
The following BLAST results are available for this feature:
BLAST of TCONS_00073219-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.705e-3652.25Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top