TCONS_00073212-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073212-protein
Unique Name	TCONS_00073212-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	529

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073212-protein ID=TCONS_00073212-protein|Name=TCONS_00073212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MYRPASATFPVPASPIFFATPQRSKSALSRRQRDGLSTPLLSNVEEQNRD
LIEDEIVETESGESQKLIRNKKELLILIALCLSYFNAFCAFSMIAPIFPY
EAKKFEMSTTLSGLVFSIYPLVVFLMSPIVGKYMPKVGVKFSLIAGGFLS
GGSNILFGFLDYLYASDGEDENGNPKVKQSSYLQFVIFCFALRTFMAIGT
AFNETAAVSIMTVTFKHALSTAQGSIALFTGLGLMAGPAIGSALYQLGNN
NFLLPFVVIGSLVWLVILMIAFILPPENVFHDNSEGNTEQSNFWKVFLVP
GIFMMSTVTLIAGMVISFLDPTLTPFVQKLDPELKPFFVGLIFLCAPMTY
AISTPFLGRLLDKKIIKGRNASIIGCFLGFICYLFMAPSPLFAFIKTSHL
WLTVTSLLCLGFLCLTAMFVPVLADMQITARKAGLPMNLSTDAILSGIYT
SMFYIGSIVGPALGAFLTQHLGFPKASTIFAFLLLLEGVCLLSFTLWENK
YGNGARENKEEEDDDDREQWREYREPNGC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045414	XLOC_045414	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073212	TCONS_00073212	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001958	Tet-R_TetA/multi-R_MdtG
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001958	Tetracycline resistance protein TetA/multidrug resistance protein MdtG	PRINTS	PR01035	TCRTETA	coord: 445..468 score: 34.17 coord: 107..123 score: 17.65 coord: 193..214 score: 28.64 coord: 254..274 score: 30.48
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 80..435 e-value: 1.8E-30 score: 106.0
None	No IPR available	GENE3D	1.20.1250.20		coord: 52..280 e-value: 3.3E-24 score: 84.8
None	No IPR available	GENE3D	1.20.1250.20		coord: 286..513 e-value: 1.2E-18 score: 66.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 505..529
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 76..500 score: 11.037
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 77..482 e-value: 3.51382E-22 score: 95.4584
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 64..500

Blast

[Close]

BLAST of TCONS_00073212-protein vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.944e-56
Identity = 139/459 (30.28%), Postives = 237/459 (51.63%), Query Frame = 0

Query:   70 NKKELLILIALCLSYFNAFCAFSMIAPIFPYEAKKFEMSTTLSGLVFSIYPLVVFLMSPIVGKYMPKVGVKFSLIAGGFLSGGSNILFGFLDYLYASDGEDENGNPKVKQSSYLQFVIFCFALRTFMAIGTAFNETAAVSIMTVTFKHALSTAQGSIALFTGLGLMAGPAIGSALYQLGNNNFLLPFVVIGSLVWLVILMIAFILPPENVFHDNSEGNTEQSNFWKVFLVPGIFMMSTVTLIAGMVISFLDPTLTPFV-QKLDPELKPFFVGLIFLCAPMTYAISTPFLGRLLDKKIIKGRNASIIGCFLGFICYLFMAPSPLFAFIKTSHLWLTVTSLLCLGFLCLTAMFVPVLADMQITARKAGLPMNLSTDAILSGIYTSMFYIGSIVGPALGAFLTQHLGFPKASTIFAFLLLLEGVCLLSFTLWENKYGNGARENKEEEDDDDREQWREYREPN 527
            +++++ +LI+       +   +S++ P FP EA+K   S T+ G++F  + L   L S + G Y+  +G KF  +AG F+SGG  ILFG LD +   DG                F+  CF +R   A+  A   TA+ SI+   F + ++T  GS+  F+GLGL+ GP +G  LYQ  +  + +PF+V+G +V L++ +  +ILP       N E +  + +FWK+  +P + +++ V         FLDPTL+ FV +K +  L   +VGL+FL   ++YAIS+P  G L DK+    +   + G  +   CY+ + P P+   IK+    L +  ++      ++   +P   ++   A + G    LST  ++SG++++M+ IG+ +GP LG FL + +GF  A+ I     L+ G+ +  F L E       R+  + ++    E+ R    PN
Sbjct:   30 SREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNTIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRV--PDGP--------------VFIAMCFLVRVMDAVSFAAAMTASSSILAKAFPNNVATVLGSLETFSGLGLILGPPVGGFLYQ--SFGYEVPFIVLGCVVLLMVPLNMYILP-------NYESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLEKFN--LPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPIL-HIKSQLWLLVLILVVSGLSAGMS--IIPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLEYS----RRKRSKSQNILSTEEERTTLLPN 454

The following BLAST results are available for this feature:

BLAST of TCONS_00073212-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073212-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S18B1	2.944e-56	30.28	MFS-type transporter SLC18B1 OS=Homo sapiens GN=SL...	[more]

You are here

TCONS_00073212-protein (polypeptide) - C. hemisphaerica