TCONS_00073006-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073006-protein
Unique Name	TCONS_00073006-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	419

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073006-protein ID=TCONS_00073006-protein|Name=TCONS_00073006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MADKAEEKMPESKKLKCIIADSAAFLKNVDLQNLSERIFTINEVIREIRD
SATRKRLAVLPYEIEFREPSTESLSAVTEFSKKTGDYKSLSAVDIRVLAL
TYQLEKEFGSPENIKLEPKKTTQIVQHSKVKSDKRLAGFYSEPKESSLDA
QDDNGTTTGEEDTKMESSSDKSEENENNNNISTEEDERDELEEMDEEEMN
EEGTEENEDDGGGWITPGNIKKVKREMGCNDEIDMENSDIKCACLTTDFA
MQNVLIQMGLHVMSVQGRLIRQARNYIQKCFGCNKETHDMEKIFCPSCGN
KTLMKISVTIGEDGVIQYHLPKRKKNHNLRGTKFSMPLPKGGRHSDQPYL
LTEDQHFSKDRMPQNRDKVNPMDPDYVSRVNPFTQNDVNSRAFHLNLHVK
NKQPRNPNETRKKKSGRKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045281	XLOC_045281	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073006	TCONS_00073006	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014881	NOB1_Zn-bd
IPR033411	Ribonuclease_PIN
IPR017117	Nob1_euk
IPR029060	PIN_domain-like

Vocabulary: **Biological Process**
Term	Definition
GO:0042274	ribosomal small subunit biogenesis
GO:0000469	cleavage involved in rRNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0004521	endoribonuclease activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0042274	ribosomal small subunit biogenesis
molecular_function	GO:0004521	endoribonuclease activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 174..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 399..419
None	No IPR available	CDD	cd09876	PIN_Nob1	coord: 18..122 e-value: 1.92674E-44 score: 150.815
IPR014881	Nin one binding (NOB1) Zn-ribbon-like	PFAM	PF08772	NOB1_Zn_bind	coord: 270..342 e-value: 8.1E-26 score: 89.9
IPR014881	Nin one binding (NOB1) Zn-ribbon-like	SUPERFAMILY	144206	NOB1 zinc finger-like	coord: 270..335
IPR033411	Ribonuclease, PIN domain	PFAM	PF17146	PIN_6	coord: 18..104 e-value: 6.8E-32 score: 109.7
IPR017117	Ribonuclease Nob1, eukaryote	PIRSF	PIRSF037125	Nob1	coord: 1..419 e-value: 1.7E-102 score: 341.6
IPR029060	PIN domain-like	GENE3D	3.40.50.1010		coord: 7..272 e-value: 1.5E-33 score: 115.1

Blast

[Close]

BLAST of TCONS_00073006-protein vs. Swiss-Prot (Human)
Match: NOB1 (RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.511e-106
Identity = 186/411 (45.26%), Postives = 263/411 (63.99%), Query Frame = 0

Query:   18 IIADSAAFLKNVDLQNLSERIFTINEVIREIRDSATRKRLAVLPYEIEFREPSTESLSAVTEFSKKTGDYKSLSAVDIRVLALTYQLEKEFGSPENIKLEPKKT--TQIVQHSKVKSDKRLAGFYSEPKESSLDAQDDNGTTTGEEDTKMESSSDKSEENENNNNISTEEDE----RDELEEMDEEEMNEEGTEENEDDGGG----WITPGNIKKVKREMGCNDEIDMENSDIKCACLTTDFAMQNVLIQMGLHVMSVQGRLIRQARNYIQKCFGCNKETHDMEKIFCPSCGNKTLMKISVTIGEDGVIQYHLPKRKKNHNLRGTKFSMPLPKGGRHSDQPYLLTEDQHFSKDRMPQN-RDKVNPMDPDYVSRVNPFTQNDVNSRAFHLNLH----VKNKQPRNPNETRKK 413
            ++AD+ AFL++  LQ++ + I+TI EV+ EIRD ATR+RLAVLPYE+ F+EP  E +  VTEFSKKTGDY SLSA DI+VLALTYQLE EF    ++K EP+K   +  +QH +  +   ++GF+  P +     + + G +  E +  +E SS     N   N I  E  E    R E    +EEE  E G E+ +DD       WITP NIK++++E+   ++ D+   D++  CLTTDFAMQNVL+QMGLHV++V G LIR+AR+YI +C GC K T DM ++FC  CGNKTL K+SVT+ +DG +  H  +  K  N RG ++S+P PKGG+++  P+ LTEDQ F + R+ Q  R K N   PDY++ V+PF +ND++SR+  L +        ++  NPN +RKK
Sbjct:    7 VVADAGAFLRHAALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPE--TPLHISGFHL-PYKPKPPQETEKGHSACEPEN-LEFSSFMFWRNPLPN-IDHELQELLIDRGEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIKQIQQEL---EQCDVPE-DVRVGCLTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPH-LTEDQRFPQLRLSQKARQKTNVFAPDYIAGVSPFVENDISSRSATLQVRDSTLGAGRRRLNPNASRKK 407

The following BLAST results are available for this feature:

BLAST of TCONS_00073006-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073006-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOB1	1.511e-106	45.26	RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 P...	[more]

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TCONS_00073006-protein (polypeptide) - C. hemisphaerica