TCONS_00073003-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073003-protein
Unique Name	TCONS_00073003-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	409

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073003-protein ID=TCONS_00073003-protein|Name=TCONS_00073003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MDPLNCIELTLKTPNQRINDIQLKCKEDWTIKNLKEHLQDVYPSKPKWNS
QKLIYLGKLLQDDHALIKEVFSSCARTFHLVCHETQTAEYIPSQTPSQSP
VSTPTQSSDTATSSSSMPTTTDTTDGLRFRGTQQAQPSSEQHQPSPSMSP
SMSPSPYNFPINMQQYQQLNPQQQYQLQMQQYYMQMQQWQYAMSTGQWPY
QQNSQPATPSSFTATPPATPLSPQEQPQPQAAQPAQPEAPQPAPQQRPQN
VPMNAGPGGAMIQDDNENGQNRDWLDVLYMSMRGLMLLSIIYFYSSTSRF
LLVTILGFIVYMYQAGWFTMNRPNPPQEQDAAAQNNVDQPDGEGHQNEEE
EGEQDEQNNTEQDENNTENNETNETIEPPSPSVFRIFCTFIVSFVTSLIP
ATPPPLQQN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045280	XLOC_045280	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073003	TCONS_00073003	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 7..83 e-value: 2.1E-5 score: 34.0
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 9..66 e-value: 3.2E-9 score: 36.3
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 7..66 score: 13.119
None	No IPR available	GENE3D	3.10.20.90		coord: 3..90 e-value: 1.4E-11 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..380
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 6..82

Blast

[Close]

BLAST of TCONS_00073003-protein vs. Swiss-Prot (Human)
Match: HERP2 (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein OS=Homo sapiens GN=HERPUD2 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 5.980e-46
Identity = 142/430 (33.02%), Postives = 197/430 (45.81%), Query Frame = 0

Query:    7 IELTLKTPNQRINDIQLKCKEDWTIKNLKEHLQDVYPSKPKWNSQKLIYLGKLLQDDHALIKEVFSS--CARTFHLVCHETQTAEYIPSQTPSQSPVSTPTQSSDTA---------------TSSSSMPTTT----DTTDGLRFRGTQQAQPSSEQ-HQPSPSMSPSMS------PSPYNFPINMQQYQQLNPQQQY---QLQMQQYYMQMQQWQYAMSTGQWPYQQNSQPATPSSFTATPPATPLSPQEQPQPQAAQPAQPEAPQPAPQQRPQNVPMNAGPGGAMIQDDNENGQNRDWLDVLYMSMRGLMLLSIIYFYSSTSRFLLVTILGFIVYMYQAGWFTMNRPNPPQEQDAAAQNNVD-QPDGEGHQNEEEEGEQDEQNNTEQDENNTENNETNETIEPPSPSVFRIFCTFIVSFVTSLIPATPP 404
            + L +K PNQ+ +D  + C  +WT+  LK HL +VYPSKP    Q+L+Y G+LL  DH  +K++          HLVC          S+TP  SP S+  + S  A               T SS   T +     +++GLR R   QAQ    Q HQ    M  ++        +P  FP+    Y   +P Q     Q+   QYYMQ Q    A +T       N  P  P+  T+ P      P E+P P     AQ   P        +NV MNA  G  +    NE   NRDWLD +Y   R  +LLSI+YFYSS SRF++V     +VY++QAGWF   +    Q+   A  NN +   DG+   N E E  +   ++  +DE+  +  E    I+   P +     +FI +F TSLIP  PP
Sbjct:   10 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLL-PDHLQLKDILRKQDEYHMVHLVC---------TSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPV----YPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATS------NVNPTQPT--TSQPLNLAHVPGEEPPPAPNLVAQENRPMN------ENVQMNAQGGPVL----NEEDFNRDWLDWMYTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQ---APNNNAEVNNDGQNANNLELEEMERLMDDGLEDESGEDGGEDASAIQ--RPGLMASAWSFITTFFTSLIPEGPP 402

The following BLAST results are available for this feature:

BLAST of TCONS_00073003-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073003-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HERP2	5.980e-46	33.02	Homocysteine-responsive endoplasmic reticulum-resi...	[more]

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TCONS_00073003-protein (polypeptide) - C. hemisphaerica