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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00072991-protein ID=TCONS_00072991-protein|Name=TCONS_00072991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MASPGNDFDGYEPYSPSLSEGIVHQKKKLRSWLVERLDVNDCPGCSWIKT
NGKVFRLSWKHYGRPGFDEERDATIFRKWAEHTGRYQQGDPPDISTWKTR
FRNALHKMPDIEEMTNYHQLDGNDPFRVYRFRTPEELEIIKNKANDSNHM
NGSKANTNPPPYPYQSYQQQTPYYGNTAPQMDLNGFAKELEMQSQMQQQQ
QQQQPTGRMYVPPPQNQPPELTPQHHQACNDYMPPAFDDDKIDSIVDEFL
REQQQAQQQTQQHQQSNNMEQLSQMSSAISTYIAANSNIPVTAVGVKLYF
SDKEVECKIVNNMNGMRISHEPPPVVPTDMVQEPDAKNILSNIFGPLDAE
QIYFPDSDDLNTQAILKNIQRGVVIIVKPNGDICATRLCQARVYVADNAL
SAPRLLNRSEETLIYSFQNDFVPKLIEYQNGASCAAPSCERYFSLGQQWR
PGLEPLXCVLCGTLLRTLFLARSAMEAWAGTIERDVNSFLGHSFLS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000975 | regulatory region DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0000975 |
regulatory region DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 246..266 |
| None | No IPR available | CDD | cd00103 | IRF | coord: 29..132
e-value: 3.71762E-30
score: 111.999 |
| IPR001346 | Interferon regulatory factor DNA-binding domain | PRINTS | PR00267 | INTFRNREGFCT | coord: 54..67
score: 40.89
coord: 72..89
score: 50.96
coord: 94..116
score: 41.08
coord: 28..47
score: 35.52 |
| IPR001346 | Interferon regulatory factor DNA-binding domain | SMART | SM00348 | irfvirus2 | coord: 22..134
e-value: 6.6E-31
score: 118.7 |
| IPR001346 | Interferon regulatory factor DNA-binding domain | PFAM | PF00605 | IRF | coord: 28..131
e-value: 4.7E-31
score: 107.1 |
| IPR001346 | Interferon regulatory factor DNA-binding domain | PROSITE | PS51507 | IRF_2 | coord: 26..133
score: 33.647 |
| IPR019471 | Interferon regulatory factor-3 | SMART | SM01243 | IRF_3_2 | coord: 291..466
e-value: 2.8E-18
score: 76.7 |
| IPR019471 | Interferon regulatory factor-3 | PFAM | PF10401 | IRF-3 | coord: 295..450
e-value: 7.1E-19
score: 68.2 |
| IPR017855 | SMAD domain-like | GENE3D | 2.60.200.10 | | coord: 281..462
e-value: 2.7E-22
score: 78.8 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 23..133
e-value: 1.0E-33
score: 115.1 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | SUPERFAMILY | 46785 | "Winged helix" DNA-binding domain | coord: 25..133 |
| IPR008984 | SMAD/FHA domain | SUPERFAMILY | 49879 | SMAD/FHA domain | coord: 295..452 |
Blast
BLAST of TCONS_00072991-protein vs. Swiss-Prot (Human)
Match: IRF2 (Interferon regulatory factor 2 OS=Homo sapiens GN=IRF2 PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.113e-27 Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 0
Query: 25 QKKKLRSWLVERLDVNDCPGCSWIKTNGKVFRLSWKHYGRPGFDEERDATIFRKWAEHTGRYQQG-DPPDISTWKTRFRNALHKMPDIEEMTNYHQLDGNDPFRVYRF 131
++ ++R WL E+++ N PG W+ K+F++ W H R G+D E+DA +FR WA HTG++Q G D PD TWK FR A++ +PDIEE+ + GN+ FRVYR
Sbjct: 4 ERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRM 111
The following BLAST results are available for this feature:
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