TCONS_00072926-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072926-protein
Unique NameTCONS_00072926-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072926-protein ID=TCONS_00072926-protein|Name=TCONS_00072926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MAEEIAKAEEIYAQNKFQEVYEYLLQFKDSENPEILWRLVRATRDRATMA
GVSADDKKKMIFEGFEVSKRALEFGDSVGPCHKWYGIMLSQTGDFIGKKK
KIEDSPAMKKHFEKAAELDPKDPTARHLIGMWCFSFADLAWYERKIAAVV
FGSPPESTYEEALGHFEKAEELSPSFYSTNQYMLGLVNMKMGKKEEATKW
FKTLLDFKVIKEEDNENIKKAEAQLKSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045243XLOC_045243Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072926TCONS_00072926Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 211..228
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 1..168
e-value: 2.0E-10
score: 40.1
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 169..228
e-value: 5.5E-9
score: 35.5
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 59..202
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 182..206
e-value: 0.047
score: 13.8
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 159..211
score: 9.092

Blast
BLAST of TCONS_00072926-protein vs. Swiss-Prot (Human)
Match: RMD1 (Regulator of microtubule dynamics protein 1 OS=Homo sapiens GN=RMDN1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.416e-67
Identity = 99/223 (44.39%), Postives = 153/223 (68.61%), Query Frame = 0
Query:    3 EEIAKAEEIYAQNKFQEVYEYLLQFKDSENPEILWRLVRATRDRATMAGVSADDKKKMIFEGFEVSKRALEFGDSVGPCHKWYGIMLSQTGDFIGKKKKIEDSPAMKKHFEKAAELDPKDPTARHLIGMWCFSFADLAWYERKIAAVVFGSPPESTYEEALGHFEKAEELSPSFYSTNQYMLGLVNMKMGKKEEATKWFKTLLDFKVIKEEDNENIKKAEAQL 225
            E + +A+ +Y   + +++Y+ L Q+K+SE+ E+LWRL RA+RD A ++  S ++KK +++E  E +KRALE  +S    HKWY I LS  GD+ G K KI ++  +K+HFEKA EL+PKD T+ HL+G+WC++FA++ WY+R+IA ++F +PP STYE+ALG+F +AE++ P+FYS N  +LG   +K+  K+ A  W     D+    EED + I+   AQL
Sbjct:   85 EILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRTSEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQ-IQTEAAQL 306          
The following BLAST results are available for this feature:
BLAST of TCONS_00072926-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RMD11.416e-6744.39Regulator of microtubule dynamics protein 1 OS=Hom... [more]
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