TCONS_00072922-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072922-protein
Unique NameTCONS_00072922-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072922-protein ID=TCONS_00072922-protein|Name=TCONS_00072922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp
LLFGQTDTLVILTENEHYTKELYTQQCVQRTPHKIWLVPKLMQKEYFENN
IEKWLRDGIQKFVILCSLESTSLLLELTKGLLISSLEPLFFITSRQPMYF
LGSLPSMVVAVEDGNNENSGDPTEKNFDFYIHDAIYHKWRTINYHDLMHQ
HYTSLELRDLIESYPLSSFVQENYQLQLRVVTVVEEPYMMIANFSNVFED
GSCVVGKICWKPNNKGPYCCIGYLIDMLESLEEDLMFQSYLYFVADGKYG
EIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILI
SMLEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGAGKQY
ALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALL
TANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVW
NRMAQFMKDYNFTNTSKAFEQLATGELQAIIHDYFIAYHNIAKDTNCRFK
FAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKC
VETSKGSSPGATNNNNVVVRIGKEYFGGVFIALCGVTLISFGILVVEYLL
NRKIHTRTYWVSERRRKRWRRY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045241XLOC_045241Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072922TCONS_00072922Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 177..548
e-value: 8.0E-14
score: 61.9
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 347..585
e-value: 5.8E-10
score: 39.1
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 208..266
e-value: 1.1E-6
score: 38.3
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 178..300
e-value: 6.1E-22
score: 77.9
NoneNo IPR availableGENE3D3.40.190.10coord: 174..307
e-value: 1.6E-21
score: 75.8
NoneNo IPR availableGENE3D3.40.190.10coord: 448..546
e-value: 2.6E-4
score: 20.3
NoneNo IPR availableGENE3D1.10.287.70coord: 308..447
e-value: 4.2E-9
score: 35.5
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 178..304
coord: 411..549

Blast
[Close]
BLAST of TCONS_00072922-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 9.799e-54
Identity = 138/487 (28.34%), Postives = 223/487 (45.79%), Query Frame = 0 
Query:  171 QENYQLQLRVVTVVEEPYMMIANFSNVFEDGSCVVGKICWKP------------------NNKGPY----CCIGYLIDMLESLEEDLMFQSYLYFVADGKYGEIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILISMLEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGA----------GKQYALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALLTANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVWNRMAQFMKDYNFTNTSKAFEQLATG--ELQAIIHDYFIAYHNIAKDTNCRFKFAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKCVETSKGSSPGATNNNNVVVRIGKEYFGGVFIALC---GVT-LISFGILVVEYLLNRKIHTRT---YWVSERRR 616
            Q   +L LRVVT++E P++       V ++G C  G++C  P                  N+  P     CC GY ID+LE + ED+ F   LY V DGKYG   NG W G+VGDL++G A +A+ S +INT RS+ + ++ PF    + ++    + A P         +   +W+G+ V    T + + + +               K ++   +      LLF R +  K P  W+ + +    A+F +  +STYTA L A  V       +SG  DPK+ +P++ FR+GTV  S+       S    +  M ++M+ YN   T    E L     +L A I D  +  + ++ D +C+    G+     G G+ +   S L   IS LI +Y+   F   L  KW   + V   K S           +++G ++F G+F+ LC   G++ L + G  +V  LL  +I  ++   YW+   +R
Sbjct:  508 QHPSKLHLRVVTLIEHPFVFT---REVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS----FPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWY--RVVPCGKRSFAVTE-----TLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWLHTSQR 978
The following BLAST results are available for this feature:
BLAST of TCONS_00072922-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A9.799e-5428.34Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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