TCONS_00072907-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072907-protein
Unique NameTCONS_00072907-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1028

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072907-protein ID=TCONS_00072907-protein|Name=TCONS_00072907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1028bp
NLLLRINRGFESWFCLLSIWVIMKTKFHAGNIYTNIDQNILISPFLINFL
RMWILKSQSEENATGDCYYLLPKRKYVVGRKDCDIVITGDASISRKHCII
EVTELDGPNCTCVIFTDTSKTGTKINDVKLKSKEETEAHDNSTIAFGKMK
FQLRHQKYLVVPSSIKKSEQKQLLEPVSKLGGRLVKEWNAETTHLVMTKI
IFTIKVVYALACGKHIVTPKFFEDILDCCDKKLGKKLPDEKNYLPVIQEQ
SMINMNALFYPNQERSQLFVGKIFVTLSATQHSRLKHAIQYSGGSMILQE
SREQKILKSISTSQTMVMALEGHEERSLSKDQSKWMKELQNMLSTHGLRG
IGESEIGLALINNSLEKYCNPASKNVNVFCTTTDTQALSQQQSQLSEMSQ
VMLLPISHNKPSSSSTESKRKRNESEEDDATSKKPKMVADPVPGNVTKET
NNKNNTSKNIINLDHEDDDFMFNEMDFSNFSSKKDDRSSNAKNTKTTTKD
DAENLSMKQNGNVNGKKTKANGALNSSNQGNLIDIEDDDFLFDETAITKS
FTSPRKQITVKSPQKKGAEVSPPKQVKKHQLSLRSPVKRTTRGQSKSEES
PVHTKKKPESKNIINIDDDDFDFDESDVTGTFNSPLRKPASNLRNNVISK
LAKNFHTGDTETATVVSQSAKENSMTEEVFIQPQLKRKLRGENSEILYRS
VGEEEPTASKAKRKSKRSNDASVIAKNSELLTEKTLISPDNFSRKIIPET
EKTLISPDDFSRRVVPETGPNVTTNFGDDDFDSEPNPFAFDVPKTKTSKI
IVDDTPEKLFKDTPIKDITQQDVSDEFNDTEHNNRFMKAVCSSQASDLND
CVDLDEANENFETPDPVSLQTPVGGERLITPSYANKDTLISEEFPMAKKQ
NIILEGWLTTTCKITSSLLKSEDDPDLIGIPRDLMQTSFKSLVAKNTSAQ
AQQRRTVQTNYSNPKNTKLFRKQFVLSESSRRHMIGRDEMEIYLSQQAED
NDLFSTFRVENDREERDQRKITQMFARV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045235XLOC_045235Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072907TCONS_00072907Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000253FHA_dom
IPR001357BRCT_dom
IPR032429Nibrin_BRCT2
IPR008984SMAD_FHA_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000253Forkhead-associated (FHA) domainSMARTSM00240FHA_2coord: 75..130
e-value: 3.9E-6
score: 36.4
IPR000253Forkhead-associated (FHA) domainPFAMPF00498FHAcoord: 76..147
e-value: 3.8E-12
score: 46.3
IPR000253Forkhead-associated (FHA) domainPROSITEPS50006FHA_DOMAINcoord: 76..130
score: 10.272
IPR001357BRCT domainPFAMPF16770RTT107_BRCT_5coord: 163..244
e-value: 2.8E-7
score: 30.2
IPR001357BRCT domainGENE3D3.40.50.10190coord: 158..438
e-value: 4.9E-17
score: 61.6
IPR001357BRCT domainCDDcd00027BRCTcoord: 157..227
e-value: 3.58492E-6
score: 45.0051
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 160..244
IPR032429Nibrin, second BRCT domainPFAMPF16508NIBRIN_BRCT_IIcoord: 263..371
e-value: 2.9E-19
score: 69.4
NoneNo IPR availableGENE3D2.60.200.20coord: 52..157
e-value: 1.5E-20
score: 72.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 700..721
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 761..785
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 405..460
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 554..620
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..531
NoneNo IPR availableCDDcd00060FHAcoord: 52..157
e-value: 2.39178E-16
score: 75.5006
IPR008984SMAD/FHA domainSUPERFAMILY49879SMAD/FHA domaincoord: 63..161

Blast
[Close]
BLAST of TCONS_00072907-protein vs. Swiss-Prot (Human)
Match: NBN (Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.328e-47
Identity = 118/347 (34.01%), Postives = 177/347 (51.01%), Query Frame = 0 
Query:   52 MWILKSQSEENATGDCYYLLPKRKYVVGRKDCDIVITGDASISRKHCII----EVTELDGPNCTCVI-FTDTSKTGTKINDVKLKSKEETEAHDNSTIAFGKM--KFQLRHQKYLVVPSSIKKSEQKQLLEPVSKLGGRLVKEWNAETTHLVMTKIIFTIKVVYALACGKHIVTPKFFEDILDCCDKKLGKKLPDEKNYLPVIQEQSMINMNALFYPNQERSQLFVGKIFVTLSATQHSRLKHAIQYSGGSMILQESREQKILKSISTSQTMVMALEGHEERSLSKD-QSKWMKELQNMLSTHGLRGIGESEIGLALINNSLEKYCNPASKNVNVFCTTTDTQALSQ 390
            MW L   +   A G+ Y LL   +YVVGRK+C I+I  D SISR H ++     VT L   +   V+   D SK GT +N+ K+++           I FG    KF++ ++  +   S +  S +  L + + +LGG  V  W  E THLVM  +  TIK + AL CG+ IV P++F + L   + K  K+ P  +++ P + E S+ + N      QER Q+F GK F+ L+A QH +L  A+ + GG   L     ++         T V+       ++L  D Q KW++ + +ML   GLR I E+EIGLA+I  + + YC+P         TTT   +LSQ
Sbjct:    1 MWKLLPAAGP-AGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVESK--KQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQ 344
The following BLAST results are available for this feature:
BLAST of TCONS_00072907-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NBN2.328e-4734.01Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1[more]
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