TCONS_00072856-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072856-protein
Unique NameTCONS_00072856-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length162

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072856-protein ID=TCONS_00072856-protein|Name=TCONS_00072856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MPTIRLQSSDSEIFEIDVEIAKASMTIKTMLEDLGLDEDDDEPIPLPNVN
AAILRKVIQWATHHKDDPPPPEDDENKEKRTDDIETWDQEFLKVDQGTLF
ELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEE
QVRKENEWCEDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045218XLOC_045218Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072856TCONS_00072856Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016897SKP1
IPR016072Skp1_comp_dimer
IPR016073Skp1_comp_POZ
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 1..111
e-value: 3.3E-57
score: 206.1
IPR016897S-phase kinase-associated protein 1PIRSFPIRSF028729SCF_Skpcoord: 1..162
e-value: 3.5E-68
score: 225.9
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 112..159
e-value: 5.4E-31
score: 106.4
IPR016072SKP1 component, dimerisationSUPERFAMILY81382Skp1 dimerisation domain-likecoord: 84..159
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 3..66
e-value: 6.5E-25
score: 87.0
NoneNo IPR availableGENE3D3.30.710.10coord: 1..161
e-value: 4.8E-73
score: 243.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..82
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 3..69

Blast
[Close]
BLAST of TCONS_00072856-protein vs. Swiss-Prot (Human)
Match: SKP1 (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 6.182e-93
Identity = 143/163 (87.73%), Postives = 153/163 (93.87%), Query Frame = 0 
Query:    1 MPTIRLQSSDSEIFEIDVEIAKASMTIKTMLEDLGLD-EDDDEPIPLPNVNAAILRKVIQWATHHKDDPPPPEDDENKEKRTDDIETWDQEFLKVDQGTLFELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEWCEDK 162
            MP+I+LQSSD EIFE+DVEIAK S+TIKTMLEDLG+D E DD+P+PLPNVNAAIL+KVIQW THHKDDPPPPEDDENKEKRTDDI  WDQEFLKVDQGTLFELILAANYLDIKGLLDV CKTVANMIKGKTPEEIRKTFNIKNDFT EEE QVRKEN+WCE+K
Sbjct:    1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
The following BLAST results are available for this feature:
BLAST of TCONS_00072856-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKP16.182e-9387.73S-phase kinase-associated protein 1 OS=Homo sapien... [more]
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