TCONS_00072807-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072807-protein
Unique NameTCONS_00072807-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1130

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072807-protein ID=TCONS_00072807-protein|Name=TCONS_00072807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1130bp
MENNSPTNSVTSASEVPLIRSCKEVEMSDAIYLTSSSYGSLKETMAHGRS
GKISICYPNEFHDAARHNRVEDLRRILSAYSGNSHKISSLNKERLSALHY
AVRYGHIQCVLDIIQADESSVHRKGKHDVQPIHYAARFYRKTDDADENVI
EILLKHGADIDAKDSFHYTPLQYAAVSGNVDALRILLNHFKENIEHADPS
GVTALHSTCLKGEVECALLLIQNGAKVFQTDNKKMNAIHYAAKSDSRQIL
DPLIQLLEHDNNALINGESLSVLLNIANINGETPLHLAILEENLEACKIL
IAKGADVNLAKLRGLTPLHLACVKDSVEIVKLLVREGARVTGTDEIREIP
LHKAARNDKVEIVKFLLETDPSQVNIEDLDKQTPLIESAAKNNFAITELL
LSHGAGIEACDKFMKTSLFWAAEKNSLEVFKVLLQHIKDNELDLKELIEQ
RDTYEHTPLHIAAKGGHTEIVQILVEHGATVSTLNDQERTPLHTAADNGF
IDVARVLIKAKPSMIDEQNASGYTAVHLAAKSGKNEMLSFLLENNADNNP
QDNHMLTPLALASYEGHKDCVKTLLHYRAAVEARDPNNKTSLFFAAAEGH
AEVVKCLLDHGANVTHKDRTGQNLLDVAIKEGKVDVANVLLDRPEWKCVL
RNKSFDESGALTSPMGKMIQSMPAMAKKVLDRCMISHENARQVAAERTRS
VEITYEFIDDNFADEMLPADKPEHTYFDSVARIANEVLLRSSYSRRRAEE
KMRERHNPPLSILCKKEDSDLLNHPVVSTLIEMKWKKFGKPVYYSKFAIF
IIFLFFLSGYVLAVTPLLPSRIFPKEGSNTTENCAPHIEKNFKLEDDVIN
VLFLIMGRYIVLALSCFQLLLEPIQMINRRFSYFCDLTNWLELTMYILAL
LYTFPNMDEAYLTNCDTVPYKTSLGACAIFLAWCDLLLFIRKFTNVGIYV
VMFIDVMKTFLKFSLTFSLFIVAFAMVFHSLIGPHKELFHTIGRSFAKTV
AMTIGEFGYEELFYAKETSRLPMITWFLFVLFCIVMTILLMNMLVGLAVD
DIQSVLKKAELTRVKMQVELVLDVEKMLPMKFRKKWGQFTTEEFTHYLRT
NVYKRRDHKCDHEANDDGDDVIGWEHEEKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045188XLOC_045188Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072807TCONS_00072807Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 437..457
NoneNo IPR availableGENE3D1.10.287.70coord: 790..1057
e-value: 7.8E-6
score: 24.9
NoneNo IPR availableCDDcd00204ANKcoord: 275..401
e-value: 1.18302E-30
score: 117.87
NoneNo IPR availableCDDcd00204ANKcoord: 91..221
e-value: 1.32645E-22
score: 94.7578
NoneNo IPR availableCDDcd00204ANKcoord: 161..301
e-value: 9.34113E-24
score: 97.8394
NoneNo IPR availableCDDcd00204ANKcoord: 516..641
e-value: 1.64191E-32
score: 123.263
NoneNo IPR availableCDDcd00204ANKcoord: 409..542
e-value: 7.91104E-30
score: 115.559
IPR002110Ankyrin repeatPRINTSPR01415ANKYRINcoord: 603..617
score: 39.61
coord: 455..470
score: 43.11
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 346..376
e-value: 0.13
score: 21.4
coord: 454..483
e-value: 1.9E-5
score: 34.1
coord: 280..309
e-value: 6.5E-6
score: 35.7
coord: 380..409
e-value: 0.45
score: 19.6
coord: 413..444
e-value: 3.8
score: 16.5
coord: 200..229
e-value: 0.15
score: 21.1
coord: 93..123
e-value: 0.77
score: 18.8
coord: 233..263
e-value: 500.0
score: 7.2
coord: 487..517
e-value: 0.025
score: 23.7
coord: 521..552
e-value: 0.0092
score: 25.2
coord: 313..342
e-value: 3.8E-4
score: 29.8
coord: 620..649
e-value: 67.0
score: 12.3
coord: 587..616
e-value: 9.7E-5
score: 31.7
coord: 166..196
e-value: 0.021
score: 24.0
coord: 554..583
e-value: 0.047
score: 22.8
coord: 127..162
e-value: 0.014
score: 24.5
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 587..619
score: 12.502
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 380..412
score: 9.725
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 313..345
score: 13.517
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 280..312
score: 13.411
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 454..486
score: 14.052
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 487..509
score: 8.816
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 554..586
score: 9.19
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 521..553
score: 12.957
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 127..165
score: 10.633
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 200..232
score: 10.312
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 148..231
e-value: 1.2E-12
score: 48.2
coord: 418..511
e-value: 1.3E-16
score: 60.8
coord: 585..643
e-value: 3.9E-8
score: 33.7
coord: 521..584
e-value: 2.0E-10
score: 41.0
coord: 239..344
e-value: 1.6E-13
score: 50.9
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 430..501
e-value: 4.7E-22
score: 77.6
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 43..175
e-value: 9.8E-26
score: 89.7
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 176..259
e-value: 3.1E-21
score: 75.0
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 502..568
e-value: 1.0E-20
score: 73.2
coord: 569..644
e-value: 1.3E-22
score: 79.3
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 355..429
e-value: 4.0E-21
score: 74.8
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 260..354
e-value: 4.0E-27
score: 94.4
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 61..643
score: 122.195
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 416..642
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 62..438
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 796..1057
e-value: 2.7E-17
score: 62.7

Blast
BLAST of TCONS_00072807-protein vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3)

HSP 1 Score: 322.398 bits (825), Expect = 5.469e-93
Identity = 281/1059 (26.53%), Postives = 486/1059 (45.89%), Query Frame = 0
Query:   70 VEDLRRILSA-YSGNSHKISSLNKER---------LSALHYAVRYGHIQCVLDIIQADES--SVHRKGKHDVQPIHYAARFYRKTDDADENVIE---ILLKHGADIDAKDSFHYTPLQYAAVSGNVDALRILLNHFKENIEHADPSGVTALHSTCLKGEVECALLLIQNGAKVFQTDNKKMNAIHYAAKSDSRQILDPLIQLLEHDNNALINGESLSVLLNIANINGETPLHLAILEENLEACKILIAKGADVNLAKLRGLTPLHLACVKDSVEIVKLLVREGAR----VTGTDEIREIPLHKAARNDKVEIVKFLLETDPSQVNIEDLDKQTPLIESAAKNNFAITELLLSHGAGIEACDKFMKTSLFWAAE-----KNSLEVFKVLLQHIKDNELDLKELIEQRDTYEHTPLHIAAKGGHTEIVQILVEHGATVSTLNDQERTPLHTAADNGFIDVARVLIK--AKPSMIDEQNASGYTAVHLAAKSGKNEMLSFLLENNADNNPQDNHMLTPLALASYEGHKDCVKTLLHYRAAVEAR-DPNNKTSLFFAAAEGHAEVVKCLLDHGANVTHKDRTGQNLLDVAIKEGKVDVANVLLDRPEWKCVLRNKSFDESGALTSPMGKMIQSMPAMAKKVLDRCMISHENARQVAAERTRSVEITYEFIDDNFADEMLPADKPEHTYFDSVARIANEVLLRSSYSRRRAEEKMRERHNPPLSILCKKEDSDLLNHPVVSTLIEMKWKKFGKPVYYSKFAIFIIFLFFLSGYVLAVTPL--LPSRIFPKEGSNTT---ENCAPHIEKNFKLEDDVINVLFLIMGRYIVLALSCFQLLLEPIQMINRRFSYFCDLTNWLELTMYILALLYTFPNMDEAYLTNCDTVP--YKTSLGACAIFLAWCDLLLFIRKFTNVGIYVVMFIDVMKTFLKFSLTFSLFIVAFAMVFHSLIGPHKELFHTIGRSFAKTVAMTIGEFGYEELF---YAKETSRLPMITWFLFVLFCIVMTILLMNMLVGLAVDDIQSVLKKAELTRVKMQVELVLDVEKMLPMKFRKKWGQFTT 1091
             ED +  L   + G+++ + + NK++            LHYA   G I+ +++ I  D S   +H    +   P+H A          ++N IE    LL  GA+ + ++     PL  A    N + +++LL H   ++     +G TA+   C     E   +L++ GAK  +++      IH AA S S++ ++ +++  E       +G S  + +N  N    TPLHLA+   +LE  K+ +  GA ++  +    T +H A  + + EIVKL++   +     V  TD   E  LH+A+  D  E+  +L+    + +N  D + ++PLI + A  ++ I  LLLS GA ++  D F +  L    +     KN    F  + Q        +KEL+   D    TPLH A + G    V  L+    ++ + +  +++PLH AA  G I+  + L++  +   +++E +  G T +HLAAK+G ++++  LL+  A     D++  T L  AS  G+   +K +L        R D +  T+L FAA EGHA+ V  LL H A++   ++   + L +A+   + +V   ++    W   L+  S +  G    P+ +MI+ +P   K +LD CM+            T        +I+ NF     P +                      ++++   + +       L+ + +    +LLNHPV    + MKW  +G          F   +  L  Y L + P+  L   I P    N+T      + H E       D  N   +     +V   S F    E  Q+  ++ +YF D++N LE  +Y   +++  P   E        +P   +   GA A++  W + LL++++F N GI++VM   ++KT L+ ++ F   ++AF + F+ L+   ++ F +   S  +T +M +G+  Y E F   Y +     P++++   V F I + I+LMN+L+GLAV DI  V K A L R+ MQVEL   +EK LP+ F +K  Q +T
Sbjct:   29 TEDFKESLKVVFEGSAYGLQNFNKQKKLKRCDDMDTFFLHYAAAEGQIE-LMEKITRDSSLEVLHEMDDYGNTPLHCAV---------EKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEE------HGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVG-ADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQ--------IKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGAL-FLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIV-LNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGN-KCPITEMIEYLPECMKVLLDFCML----------HSTEDKSCRDYYIEYNFKYLQCPLE----------------------FTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYG----------FRAHMMNLGSYCLGLIPMTILVVNIKPGMAFNSTGIINETSDHSEI-----LDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVE--------IPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNL-QDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKST 1003          
The following BLAST results are available for this feature:
BLAST of TCONS_00072807-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPA15.469e-9326.53Transient receptor potential cation channel subfam... [more]
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