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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00072807-protein ID=TCONS_00072807-protein|Name=TCONS_00072807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1130bp MENNSPTNSVTSASEVPLIRSCKEVEMSDAIYLTSSSYGSLKETMAHGRS GKISICYPNEFHDAARHNRVEDLRRILSAYSGNSHKISSLNKERLSALHY AVRYGHIQCVLDIIQADESSVHRKGKHDVQPIHYAARFYRKTDDADENVI EILLKHGADIDAKDSFHYTPLQYAAVSGNVDALRILLNHFKENIEHADPS GVTALHSTCLKGEVECALLLIQNGAKVFQTDNKKMNAIHYAAKSDSRQIL DPLIQLLEHDNNALINGESLSVLLNIANINGETPLHLAILEENLEACKIL IAKGADVNLAKLRGLTPLHLACVKDSVEIVKLLVREGARVTGTDEIREIP LHKAARNDKVEIVKFLLETDPSQVNIEDLDKQTPLIESAAKNNFAITELL LSHGAGIEACDKFMKTSLFWAAEKNSLEVFKVLLQHIKDNELDLKELIEQ RDTYEHTPLHIAAKGGHTEIVQILVEHGATVSTLNDQERTPLHTAADNGF IDVARVLIKAKPSMIDEQNASGYTAVHLAAKSGKNEMLSFLLENNADNNP QDNHMLTPLALASYEGHKDCVKTLLHYRAAVEARDPNNKTSLFFAAAEGH AEVVKCLLDHGANVTHKDRTGQNLLDVAIKEGKVDVANVLLDRPEWKCVL RNKSFDESGALTSPMGKMIQSMPAMAKKVLDRCMISHENARQVAAERTRS VEITYEFIDDNFADEMLPADKPEHTYFDSVARIANEVLLRSSYSRRRAEE KMRERHNPPLSILCKKEDSDLLNHPVVSTLIEMKWKKFGKPVYYSKFAIF IIFLFFLSGYVLAVTPLLPSRIFPKEGSNTTENCAPHIEKNFKLEDDVIN VLFLIMGRYIVLALSCFQLLLEPIQMINRRFSYFCDLTNWLELTMYILAL LYTFPNMDEAYLTNCDTVPYKTSLGACAIFLAWCDLLLFIRKFTNVGIYV VMFIDVMKTFLKFSLTFSLFIVAFAMVFHSLIGPHKELFHTIGRSFAKTV AMTIGEFGYEELFYAKETSRLPMITWFLFVLFCIVMTILLMNMLVGLAVD DIQSVLKKAELTRVKMQVELVLDVEKMLPMKFRKKWGQFTTEEFTHYLRT NVYKRRDHKCDHEANDDGDDVIGWEHEEKV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO:0005216 | ion channel activity |
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
GO:0006811 | ion transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006811 |
ion transport |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005216 |
ion channel activity |
molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 437..457 |
None | No IPR available | GENE3D | 1.10.287.70 | | coord: 790..1057 e-value: 7.8E-6 score: 24.9 |
None | No IPR available | CDD | cd00204 | ANK | coord: 275..401 e-value: 1.18302E-30 score: 117.87 |
None | No IPR available | CDD | cd00204 | ANK | coord: 91..221 e-value: 1.32645E-22 score: 94.7578 |
None | No IPR available | CDD | cd00204 | ANK | coord: 161..301 e-value: 9.34113E-24 score: 97.8394 |
None | No IPR available | CDD | cd00204 | ANK | coord: 516..641 e-value: 1.64191E-32 score: 123.263 |
None | No IPR available | CDD | cd00204 | ANK | coord: 409..542 e-value: 7.91104E-30 score: 115.559 |
IPR002110 | Ankyrin repeat | PRINTS | PR01415 | ANKYRIN | coord: 603..617 score: 39.61 coord: 455..470 score: 43.11 |
IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 346..376 e-value: 0.13 score: 21.4 coord: 454..483 e-value: 1.9E-5 score: 34.1 coord: 280..309 e-value: 6.5E-6 score: 35.7 coord: 380..409 e-value: 0.45 score: 19.6 coord: 413..444 e-value: 3.8 score: 16.5 coord: 200..229 e-value: 0.15 score: 21.1 coord: 93..123 e-value: 0.77 score: 18.8 coord: 233..263 e-value: 500.0 score: 7.2 coord: 487..517 e-value: 0.025 score: 23.7 coord: 521..552 e-value: 0.0092 score: 25.2 coord: 313..342 e-value: 3.8E-4 score: 29.8 coord: 620..649 e-value: 67.0 score: 12.3 coord: 587..616 e-value: 9.7E-5 score: 31.7 coord: 166..196 e-value: 0.021 score: 24.0 coord: 554..583 e-value: 0.047 score: 22.8 coord: 127..162 e-value: 0.014 score: 24.5 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 587..619 score: 12.502 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 380..412 score: 9.725 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 313..345 score: 13.517 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 280..312 score: 13.411 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 454..486 score: 14.052 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 487..509 score: 8.816 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 554..586 score: 9.19 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 521..553 score: 12.957 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 127..165 score: 10.633 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 200..232 score: 10.312 |
IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 148..231 e-value: 1.2E-12 score: 48.2 coord: 418..511 e-value: 1.3E-16 score: 60.8 coord: 585..643 e-value: 3.9E-8 score: 33.7 coord: 521..584 e-value: 2.0E-10 score: 41.0 coord: 239..344 e-value: 1.6E-13 score: 50.9 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 430..501 e-value: 4.7E-22 score: 77.6 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 43..175 e-value: 9.8E-26 score: 89.7 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 176..259 e-value: 3.1E-21 score: 75.0 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 502..568 e-value: 1.0E-20 score: 73.2 coord: 569..644 e-value: 1.3E-22 score: 79.3 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 355..429 e-value: 4.0E-21 score: 74.8 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 260..354 e-value: 4.0E-27 score: 94.4 |
IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 61..643 score: 122.195 |
IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 416..642 |
IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 62..438 |
IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 796..1057 e-value: 2.7E-17 score: 62.7 |
Blast
BLAST of TCONS_00072807-protein vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 322.398 bits (825), Expect = 5.469e-93 Identity = 281/1059 (26.53%), Postives = 486/1059 (45.89%), Query Frame = 0
Query: 70 VEDLRRILSA-YSGNSHKISSLNKER---------LSALHYAVRYGHIQCVLDIIQADES--SVHRKGKHDVQPIHYAARFYRKTDDADENVIE---ILLKHGADIDAKDSFHYTPLQYAAVSGNVDALRILLNHFKENIEHADPSGVTALHSTCLKGEVECALLLIQNGAKVFQTDNKKMNAIHYAAKSDSRQILDPLIQLLEHDNNALINGESLSVLLNIANINGETPLHLAILEENLEACKILIAKGADVNLAKLRGLTPLHLACVKDSVEIVKLLVREGAR----VTGTDEIREIPLHKAARNDKVEIVKFLLETDPSQVNIEDLDKQTPLIESAAKNNFAITELLLSHGAGIEACDKFMKTSLFWAAE-----KNSLEVFKVLLQHIKDNELDLKELIEQRDTYEHTPLHIAAKGGHTEIVQILVEHGATVSTLNDQERTPLHTAADNGFIDVARVLIK--AKPSMIDEQNASGYTAVHLAAKSGKNEMLSFLLENNADNNPQDNHMLTPLALASYEGHKDCVKTLLHYRAAVEAR-DPNNKTSLFFAAAEGHAEVVKCLLDHGANVTHKDRTGQNLLDVAIKEGKVDVANVLLDRPEWKCVLRNKSFDESGALTSPMGKMIQSMPAMAKKVLDRCMISHENARQVAAERTRSVEITYEFIDDNFADEMLPADKPEHTYFDSVARIANEVLLRSSYSRRRAEEKMRERHNPPLSILCKKEDSDLLNHPVVSTLIEMKWKKFGKPVYYSKFAIFIIFLFFLSGYVLAVTPL--LPSRIFPKEGSNTT---ENCAPHIEKNFKLEDDVINVLFLIMGRYIVLALSCFQLLLEPIQMINRRFSYFCDLTNWLELTMYILALLYTFPNMDEAYLTNCDTVP--YKTSLGACAIFLAWCDLLLFIRKFTNVGIYVVMFIDVMKTFLKFSLTFSLFIVAFAMVFHSLIGPHKELFHTIGRSFAKTVAMTIGEFGYEELF---YAKETSRLPMITWFLFVLFCIVMTILLMNMLVGLAVDDIQSVLKKAELTRVKMQVELVLDVEKMLPMKFRKKWGQFTT 1091
ED + L + G+++ + + NK++ LHYA G I+ +++ I D S +H + P+H A ++N IE LL GA+ + ++ PL A N + +++LL H ++ +G TA+ C E +L++ GAK +++ IH AA S S++ ++ +++ E +G S + +N N TPLHLA+ +LE K+ + GA ++ + T +H A + + EIVKL++ + V TD E LH+A+ D E+ +L+ + +N D + ++PLI + A ++ I LLLS GA ++ D F + L + KN F + Q +KEL+ D TPLH A + G V L+ ++ + + +++PLH AA G I+ + L++ + +++E + G T +HLAAK+G ++++ LL+ A D++ T L AS G+ +K +L R D + T+L FAA EGHA+ V LL H A++ ++ + L +A+ + +V ++ W L+ S + G P+ +MI+ +P K +LD CM+ T +I+ NF P + ++++ + + L+ + + +LLNHPV + MKW +G F + L Y L + P+ L I P N+T + H E D N + +V S F E Q+ ++ +YF D++N LE +Y +++ P E +P + GA A++ W + LL++++F N GI++VM ++KT L+ ++ F ++AF + F+ L+ ++ F + S +T +M +G+ Y E F Y + P++++ V F I + I+LMN+L+GLAV DI V K A L R+ MQVEL +EK LP+ F +K Q +T
Sbjct: 29 TEDFKESLKVVFEGSAYGLQNFNKQKKLKRCDDMDTFFLHYAAAEGQIE-LMEKITRDSSLEVLHEMDDYGNTPLHCAV---------EKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEE------HGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVG-ADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQ--------IKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGAL-FLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIV-LNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGN-KCPITEMIEYLPECMKVLLDFCML----------HSTEDKSCRDYYIEYNFKYLQCPLE----------------------FTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYG----------FRAHMMNLGSYCLGLIPMTILVVNIKPGMAFNSTGIINETSDHSEI-----LDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVE--------IPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNL-QDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKST 1003
The following BLAST results are available for this feature:
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