TCONS_00072736-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072736-protein
Unique NameTCONS_00072736-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072736-protein ID=TCONS_00072736-protein|Name=TCONS_00072736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MSRGTSSGYDRYITVFSPEGRLYQVEYAFKAINQGATTSIGMRGTDCAVV
VTQKKVPDKLLDANTLTHMFKLSDRVGCVMTGMMGDCKYQVQRARMIAAK
WKYKFGYDISADQLCRKIADISQVYTQNAEMRPLGTCMILIGFDEDGQPQ
LYKTDPAGYFCGYKATSSGVKQNEANSYLEKKLKKKQAFTCKESIETAIS
CLMSVLSVDFKPSEIEVALVTADDQSFKVLTEAEIDEHLTSIAERD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045146XLOC_045146Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072736TCONS_00072736Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
IPR023332Proteasome_alpha-type
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000426Proteasome alpha-subunit, N-terminal domainSMARTSM00948Proteasome_A_N_2coord: 9..31
e-value: 5.2E-11
score: 52.6
IPR000426Proteasome alpha-subunit, N-terminal domainPFAMPF10584Proteasome_A_Ncoord: 9..31
e-value: 8.5E-15
score: 54.0
IPR000426Proteasome alpha-subunit, N-terminal domainPROSITEPS00388PROTEASOME_ALPHA_1coord: 9..31
IPR029055Nucleophile aminohydrolases, N-terminalGENE3D3.60.20.10coord: 8..246
e-value: 6.6E-79
score: 264.1
IPR029055Nucleophile aminohydrolases, N-terminalSUPERFAMILY56235N-terminal nucleophile aminohydrolases (Ntn hydrolases)coord: 7..245
IPR001353Proteasome, subunit alpha/betaPFAMPF00227Proteasomecoord: 36..219
e-value: 2.0E-50
score: 170.8
IPR023332Proteasome alpha-type subunitPROSITEPS51475PROTEASOME_ALPHA_2coord: 24..239
score: 71.102
NoneNo IPR availableCDDcd03754proteasome_alpha_type_6coord: 8..220
e-value: 2.08556E-138
score: 389.671

Blast
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BLAST of TCONS_00072736-protein vs. Swiss-Prot (Human)
Match: PSA6 (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 7.269e-135
Identity = 169/246 (68.70%), Postives = 214/246 (86.99%), Query Frame = 0 
Query:    1 MSRGTSSGYDRYITVFSPEGRLYQVEYAFKAINQGATTSIGMRGTDCAVVVTQKKVPDKLLDANTLTHMFKLSDRVGCVMTGMMGDCKYQVQRARMIAAKWKYKFGYDISADQLCRKIADISQVYTQNAEMRPLGTCMILIGFDEDGQPQLYKTDPAGYFCGYKATSSGVKQNEANSYLEKKLKKKQAFTCKESIETAISCLMSVLSVDFKPSEIEVALVTADDQSFKVLTEAEIDEHLTSIAERD 246
            MSRG+S+G+DR+IT+FSPEGRLYQVEYAFKAINQG  TS+ +RG DCAV+VTQKKVPDKLLD++T+TH+FK+++ +GCVMTGM  D + QVQRAR  AA WKYK+GY+I  D LC++IADISQVYTQNAEMRPLG CMILIG DE+  PQ+YK DPAGY+CG+KAT++GVKQ E+ S+LEKK+KKK  +T ++++ETAI+CL +VLS+DFKPSEIEV +VT ++  F++LTEAEID HL ++AERD
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
The following BLAST results are available for this feature:
BLAST of TCONS_00072736-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSA67.269e-13568.70Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
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