TCONS_00072730-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072730-protein
Unique NameTCONS_00072730-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072730-protein ID=TCONS_00072730-protein|Name=TCONS_00072730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MSSSWNSLGLHSWLSDQCKELGILKPSEIQEQCIPQILKGKDCIGCSKTG
SGKTAAFALPILQKLSEDPYGIFALILTPTRELAFQIADQFRVFGKSINL
KDTIVVGGMDMVQQAGDLNKKPHIVIATPGRLAALMSVDADFTFKNIQFL
VLDEADRLLESSFEDDLKFIFSNISKSRQTLLFSATLTDTMEQLRLVTKK
DHFCYEVKSQVATVQELDQRFLLIPSQVKDCYLIHLLQTFIENKSVIIFT
HTCRSCHVLSFLLRKLGIKCAALHSLLSQRERLASLARFKTEVVKILIAT
DVASRGLDIPLVELVVNFNVPGSSKDYIHRVGRTARAGRGGMSLTLMTQY
DIERLTTIEDDINTKMTEFETNETDALKLLKIVSVTRREVEIRLNDSGFG
ERRLNNRKKHGLPANKKFLKHKKMREERKKKQENETEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045141XLOC_045141Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072730TCONS_00072730Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 416..436
NoneNo IPR availableGENE3D3.40.50.300coord: 222..438
e-value: 9.0E-43
score: 145.9
NoneNo IPR availableGENE3D3.40.50.300coord: 10..221
e-value: 1.1E-57
score: 194.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..438
NoneNo IPR availableCDDcd00268DEADccoord: 5..194
e-value: 8.54352E-82
score: 252.02
NoneNo IPR availableCDDcd00079HELICccoord: 216..346
e-value: 5.42915E-33
score: 120.42
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 22..220
e-value: 7.4E-54
score: 194.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 34..205
score: 31.402
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 257..338
e-value: 5.3E-30
score: 115.7
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 232..338
e-value: 3.1E-29
score: 101.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 216..377
score: 22.599
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 28..193
e-value: 9.6E-48
score: 162.2
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 151..159
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 3..31
score: 10.193
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 71..359

Blast
[Close]
BLAST of TCONS_00072730-protein vs. Swiss-Prot (Human)
Match: DDX49 (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 497.664 bits (1280), Expect = 1.090e-174
Identity = 242/439 (55.13%), Postives = 324/439 (73.80%), Query Frame = 0 
Query:    3 SSWNSLGLHSWLSDQCKELGILKPSEIQEQCIPQILKGKDCIGCSKTGSGKTAAFALPILQKLSEDPYGIFALILTPTRELAFQIADQFRVFGKSINLKDTIVVGGMDMVQQAGDLNKKPHIVIATPGRLAALMSVDADFTFKNIQFLVLDEADRLLE---SSFEDDLKFIFSNISKSRQTLLFSATLTDTMEQLRLVTKKDHFCYEVKSQVATVQELDQRFLLIPSQVKDCYLIHLLQTFI---ENKSVIIFTHTCRSCHVLSFLLRKLGIKCAALHSLLSQRERLASLARFKTEVVKILIATDVASRGLDIPLVELVVNFNVPGSSKDYIHRVGRTARAGRGGMSLTLMTQYDIERLTTIEDDINTKMTEFETNETDALKLLKIVSVTRREVEIRLNDSGFGERR-LNNRKKHGLPANKKFLKHKKMREERKKKQEN 434
            + +  LGL SWL +QC++LG+ +P+ +Q  CIP IL+G+DC+GC+KTGSGKTAAF LPILQKLSEDPYGIF L+LTPTRELA+QIA+QFRV GK + LKD I+VGGMDMV QA +L++KPH+VIATPGRLA  +     F+ K I+FLV+DEADRLLE   + F  DL+ I + +   RQTLLFSATLTDT+ +L+ +     F +E ++ V+TV++LDQR+LL+P +VKD YL+HL+Q F    E+ S+IIFT+TC++C +L  +LRK      ALHS++ Q+ER A+LA+FK+ + +ILIATDVASRGLDIP V++V+N N PG  K YIHRVGRTARAGR G ++TL+TQYDI  +  IE+ I  K+ EF   E + L++L  V+V RRE EI+L  + F E++ +N RK+  L      L+ K+  E  K KQ+N
Sbjct:    2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKN 440
The following BLAST results are available for this feature:
BLAST of TCONS_00072730-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX491.090e-17455.13Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
back to top