TCONS_00072549-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072549-protein
Unique NameTCONS_00072549-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072549-protein ID=TCONS_00072549-protein|Name=TCONS_00072549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MSKPQVGKKKEIYKYNAPWTVYGMNWSVRPDKKFRLALGSFIEEYSNKVQ
IVQLDEESGDFILRSTFDHPYPTTKIVWIPDERGHYPDLVATSGDYLRVW
NVSNDEVKLETLLNNNKNSDYCAPLTSFDWNEVDPNILGTSSIDTTCTIW
GLETGQPIGRVQGHVKTQLIAHDKEVYDIAFSRACSGRDTFASVGGDGSV
RMFDLRHLEHSTIIYEEAQHTPLLRLAWNKQDPNYLSTFALDSMETIILD
MRMPCTPVARLSNHRAAINGMAWAPHSSCHICTSADDHQALIWDIQPMPR
AIEDPILAYTAEGEINNVKWATNQPDWIAISYNKSVEILRV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045021XLOC_045021Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072549TCONS_00072549Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 162..204
e-value: 0.0018
score: 27.5
coord: 254..294
e-value: 1.7E-5
score: 34.3
coord: 60..101
e-value: 66.0
score: 5.5
coord: 106..151
e-value: 15.0
score: 9.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 257..294
e-value: 0.021
score: 15.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 261..296
score: 9.874
NoneNo IPR availableGENE3D1.10.10.670coord: 199..304
e-value: 4.8E-10
score: 38.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 5..198
e-value: 5.0E-22
score: 78.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 281..295
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 118..303
score: 11.418
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 26..295

Blast
[Close]
BLAST of TCONS_00072549-protein vs. Swiss-Prot (Human)
Match: DCAF7 (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 275/338 (81.36%), Postives = 303/338 (89.64%), Query Frame = 0 
Query:    7 GKKKEIYKYNAPWTVYGMNWSVRPDKKFRLALGSFIEEYSNKVQIVQLDEESGDFILRSTFDHPYPTTKIVWIPDERGHYPDLVATSGDYLRVWNVSNDEVKLETLLNNNKNSDYCAPLTSFDWNEVDPNILGTSSIDTTCTIWGLETGQPIGRVQ---GHVKTQLIAHDKEVYDIAFSRACSGRDTFASVGGDGSVRMFDLRHLEHSTIIYEEAQHTPLLRLAWNKQDPNYLSTFALDSMETIILDMRMPCTPVARLSNHRAAINGMAWAPHSSCHICTSADDHQALIWDIQPMPRAIEDPILAYTAEGEINNVKWATNQPDWIAISYNKSVEILRV 341
            GK+KEIYKY APWTVY MNWSVRPDK+FRLALGSF+EEY+NKVQ+V LDEES +FI R+TFDHPYPTTK++WIPD +G YPDL+ATSGDYLRVW V   E +LE LLNNNKNSD+CAPLTSFDWNEVDP +LGTSSIDTTCTIWGLETGQ +GRV    GHVKTQLIAHDKEVYDIAFSRA  GRD FASVG DGSVRMFDLRHLEHSTIIYE+ QH PLLRL WNKQDPNYL+T A+D ME +ILD+R+PCTPVARL+NHRA +NG+AWAPHSSCHICT+ADDHQALIWDIQ MPRAIEDPILAYTAEGEINNV+WA+ QPDWIAI YN  +EILRV
Sbjct:    5 GKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYPTTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342
The following BLAST results are available for this feature:
BLAST of TCONS_00072549-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCAF70.000e+081.36DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
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