TCONS_00072492-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072492-protein
Unique Name	TCONS_00072492-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1305

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072492-protein ID=TCONS_00072492-protein|Name=TCONS_00072492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1305bp
FRKKKTKHNIIIKMRNLILNEKLVLETGIKNGLFTAIDSLNEIVYLASKN
EVFGYNTIMKECVCELSLEKEGYLSQAEDDRIVAFNFLQDQESLCIITSK
GDVLLWQHEMDSLENVGSVEAGFTNASWSSDQELLVLTTKQNTLIVMTRD
FDPINEFPIHSDDFGEAQQVNVGWGSKETQFHGSEGKEAAKVQKIDTSSP
VLPTDDRRTEISWRGDGQYFSISSINPASDSRCIRIFNNEGILQATNEKI
EGLEQCIGWRTSGNLIACSQQKPNKHDVIFFEKNGLQHGEFTLSSKPNDK
LIKQILWNPNSDILTLLIQDLSRNGKFSVQLWTTGNYHWYLKQELTFNEQ
PPSLSWDPENAYKLHIISQDGEFKQFVYIYDVIQSKGDDENLAMVAVIDG
SQLLLTPFRQMVLPPPMAAHTISLDACINQLAFGVNEQKHDILIKTSHNL
VFAKFDRKNNSYTTQKLTVVEGDENTADLSKFYHLVFLKDGFVAGLEVSN
ECTKVVLLQLNEDGTAVTKRSHLDMNETRIMKLFKSEDTDCQLLIQYSNG
SVKMLNYLDGALNYGNLDELTLPHSCDSVASREINGKRYVFGLTSHFRLF
MNDKEIANNCTSFFIHDDFLLLTTHAHSLRCVYIKSLVQNAETQLDNIAF
DEASRRVERGSKLVTAVMQGTAVVLQMPRGNLECIHPRPLVITHLQKLLN
SLHYKQALEIMRKHRINLNLVYDNDPQLFLKNVDTFVNNVNSSNRINLFL
ADLSAEDVCSSLYFPYYHHSEENKESNKAKSSPTKVNEVCKAVREAIKRS
PNAEKLMLSILTTYVRQSEPDLQTVLIKIKELKDNPSLNKSVTYEKALSY
IIYLVDVNQLFDIALGLYDFDVVIMVAEKSQKDPKEYLPFLNNFKNMEEN
YRKFSIDKYLKKNTQAIQHLVKCAEGFEELLDFVTQHDLYKEAIKLYKHT
TEEFKKLSFLYGQYLHRKKYYEEAAIIFSRCGYHEESIDSLLHTDNWNMA
LMESRLNGDSQDKFIALCRKFSERLKNHRKYLDAAIIQEQYLKDMEESMV
CLLEGNLWFQALNLIQRSEREDLIETNFKPAILECQENLTEKITELKETF
NKHRTRLQIVIANKEQERLEILEGIRDDPQNDLYSDTSSITGQSAVSSTS
SRSSKGTRTSGHSRKSKAKGERKKYSLREGSTHEDFALREALAEIVNTAD
GMKDEVESLSKVLLLHYYDEKAKEIQNCLDSLIVLVEKHKKEIWAGETKE
TNSESFEYGPASTVMSIIERKNAAQNAGNQKSDLPEPTRPNLRSNFKWKL
TTIST

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044985	XLOC_044985	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072492	TCONS_00072492	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006849	Iki3
IPR015943	WD40/YVTN_repeat-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0033588	Elongator holoenzyme complex

Vocabulary: **Biological Process**
Term	Definition
GO:0002098	tRNA wobble uridine modification
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0033588	Elongator holoenzyme complex
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1086..1106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1130..1181
None	No IPR available	SUPERFAMILY	69322	Tricorn protease domain 2	coord: 211..382 coord: 76..166
IPR006849	Elongator complex subunit Iki3	PIRSF	PIRSF017233	IKAP	coord: 14..1301 e-value: 0.0 score: 1046.4
IPR006849	Elongator complex subunit Iki3	PFAM	PF04762	IKI3	coord: 35..923 e-value: 8.0E-277 score: 920.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 35..605 e-value: 2.3E-12 score: 46.0

Blast

[Close]

BLAST of TCONS_00072492-protein vs. Swiss-Prot (Human)
Match: ELP1 (Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3)

HSP 1 Score: 901.738 bits (2329), Expect = 0.000e+0
Identity = 529/1356 (39.01%), Postives = 798/1356 (58.85%), Query Frame = 0

Query:   14 MRNLILNEKLVLE--TGIKNGLFTAIDSLNEIVYLASKNEVFGYNTIMKECVCELSLEKEGYLSQAEDDRIVAFNFLQDQESLCIITSKGDVLLWQHEMDSLENVGSVEAGFTNASWSSDQELLVLTTKQNTLIVMTRDFDPINEFPIHSDDFGEAQQVNVGWGSKETQFHGSEGKEAAKVQKIDTSSPVLPTDDRRTEISWRGDGQYFSISSINPASDSRCIRIFNNEGILQATNEKIEGLEQCIGWRTSGNLIACSQQKPNKHDVIFFEKNGLQHGEFTLSSKPNDKLIKQILWNPNSDILTLLIQDLSRN----GKFSVQLWTTGNYHWYLKQELTFN----EQPPSLSWDPENAYKLHIISQDGEFKQFVYIYDVIQSKGDDE-NLAMVAVIDGSQLLLTPFRQMVLPPPMAAHTISLDACINQLAFGVNEQKHDIL--IKTSHNLVFAKFDRKNNSYTTQKLTVVEGDE-----NTADLSKFYHLVF----------LKDGFVAGLEVSNECTKVVLLQLNEDGTAVTKRSHLDMNETRI------MKLFKSEDTDCQLLIQYSNGSVK--MLNYLDGAL----------------NYGNLDELTLPHSCDSVASREINGKRYVFGLTSHFRLFMNDKEIANNCTSFFIHDDFLLLTTHAHSLRCVYIKSL---VQNAETQLDNIAFDEASRRVERGSKLVTAVMQGTAVVLQMPRGNLECIHPRPLVITHLQKLLNSLHYKQALEIMRKHRINLNLVYDNDPQLFLKNVDTFVNNVNSSNRINLFLADLSAEDVCSSLY-FPYYHHSEENKESNKAKSSPTKVNEVCKAVREAIKRSPNAEKLMLSILTTYVRQSEPDLQTVLIKIKELKDN-PSLNKSVTYEKALSYIIYLVDVNQLFDIALGLYDFDVVIMVAEKSQKDPKEYLPFLNNFKNMEENYRKFSIDKYLKKNTQAIQHLVKCA-EGFEELLDFVTQHDLYKEAIKLYKHTTEEFKKLSFLYGQYLHRKKYYEEAAIIFSRCGYHEESIDSLLHTDNWNMALMESRLNGDSQDKFIALCRKFSERLKNHRKYLDAAIIQEQYLKDMEESMVCLLEGNLWFQALNLIQRSEREDLIETNFKPAILECQENLTEKITELKETFNKHRTRLQIVIANKEQERLEILEG-IRDDPQNDLYSDTSSITGQSAVSSTSSRSSKGTRTSGHSRKSKAKGERKKYSLREGSTHEDFALREALAEIVNTADGMKDEVESLSKVLLLHYYDEKAKEIQNCLDSLIVLVEKHKKEIWAGETKETNSESFEYGPASTVMSIIERKNAAQNAGNQKSDLPE-------PTRPNLRSNFKWKLTTI 1303
            MRNL L   L      G  N    ++ +    V + S++ +   + + +E   E+SL  EG+L +    RIV    L DQES+C+ T+ GDV+L       LE VGSV +G +  SWS DQEL++L T Q TLI+MT+DF+PI E  IH DDFGE++ + VGWG KETQFHGSEG++AA   ++  S+  LP DD R +++WRGDGQ+F++S + P + +R +R++N E  LQ+T+E + GL   + W+ SG+LIA +Q KPN+ D++FFEKNGL HG FTL    ++  +  +LWN +S +L + ++DL R      K  VQLWT GNYHWYLKQ L+F+     +  SL WDP   Y+LH++ Q   +  + + +   +S GD+  +L+ VAVIDG+++L+T FRQ V+PPPM  + +     +NQ+ F  + QK + L  +  S+ +   K     ++  T KL  V G        T  L K Y + F          LK G +  +E       V L   + + +  +   HL    + +      + +  S   D  ++    N   K  +L   DG +                N G    +  P+ C       I  +  V GLT   R F+ND E+A+N TSF ++D+FLLLTTH+H+ +C  ++        A    ++++  E  R+VERGS++VT V Q T +VLQMPRGNLE +H R LV+  ++K L+ L +K+A E MRK RINLNL+YD++P++FL NV+TF+  ++S N INLF  +L  EDV  ++Y  P       +++ +       K++ VC A+R A+  S N  K  LSILT++V+++ P+L+ VL K+ EL+ N PS   +V+ E+AL Y+++LVDVN+L+D +LG YDFD+V+MVAEKSQKDPKEYLPFLN  K ME NY++F+IDKYLK+  +AI HL KC  E F E L+ +   +LY EA+KLY  ++++++ +S  YG++L ++  YE A ++F+RCG HE+++ + L   NW  AL  +     ++D+ + L R  + +L   RK++DAA++ E+  +D EE+++ LLEG  W +AL L+ +  R D+IETN KP+ILE Q+N    +     TF++H+ RL +V   KEQ +   L+  +    ++DL+S+TSS+   S +S   S S+  +R S  S K++ K ERKK+SL+EGS  ED AL EAL+E+V   + +KDEV  + KVL L  +DE+ +E+Q   +  + L+E+   EIW   T + NS +   GP ST  SI+           QK+ +P        P + N R+  +WKL+ +
Sbjct:    1 MRNLKLFRTLEFRDIQGPGNPQCFSLRTEQGTVLIGSEHGLIEVDPVSREVKNEVSLVAEGFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVASGISVMSWSPDQELVLLATGQQTLIMMTKDFEPILEQQIHQDDFGESKFITVGWGRKETQFHGSEGRQAAFQMQMHESA--LPWDDHRPQVTWRGDGQFFAVSVVCPETGARKVRVWNREFALQSTSEPVAGLGPALAWKPSGSLIASTQDKPNQQDIVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSADPTVKLGAVGGSGFKVCLRTPHLEKRYKIQFENNEDQDVNPLKLGLLTWIE-----EDVFLAVSHSEFSPRSVIHHLTAASSEMDEEHGQLNVSSSAAVDGVIISLCCNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGF-PVRFPYPCTQTELAMIGEEECVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTCQCFCLRDASFKTLQAGLSSNHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHINLFFTELKEEDVTKTMYPAPVTSSVYLSRDPDG-----NKIDLVCDAMR-AVMESINPHKYCLSILTSHVKKTTPELEIVLQKVHELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGLDDEVPHGQESDLFSETSSVVSGSEMSGKYSHSN--SRISARSSKNRRKAERKKHSLKEGSPLEDLALLEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLMERSLPEIWT-LTYQQNSATPVLGPNSTANSIMASYQ------QQKTSVPVLDAELFIPPKINRRT--QWKLSLL 1331

The following BLAST results are available for this feature:

BLAST of TCONS_00072492-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072492-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ELP1	0.000e+0	39.01	Elongator complex protein 1 OS=Homo sapiens GN=IKB...	[more]

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TCONS_00072492-protein (polypeptide) - C. hemisphaerica