TCONS_00072411-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072411-protein
Unique NameTCONS_00072411-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072411-protein ID=TCONS_00072411-protein|Name=TCONS_00072411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=836bp
MSQTWNVTMLKSVHLVGENESEDLYGGFEEEYNPAYDTEGLYEDEGFQQA
LKTSYGKRAPGTSAGRPPGTGFQRMGTAAGRGRPMTGVAADTSQARPMTA
VRAAGYSSMGGRAPNQTFDPLNQSKGPAPPLEGKDEDSPEEKVALLEKQV
MELIEESCFAAERNDLQMALEKAKEAGRKERNLCRQRDQSQMADQMNLDI
TYSVLFSLALSYHRLQLWHEANNTYNVIVKNKMFSNAGRLRVNIGNIFFE
QGKYSNAVKFYRMALDQIPNTHKDVRIRIMKNIGLVFVRMGQYNDAVTAF
EHIMSDKPDVESGFNLLLCSYAIGDKENMKKAFQKLLQVRVDFEDEEKYS
GSSDDLKSQLILEAIRDDPLRKWEKEQKAKAERCIMMAAKLIAPVIEPTF
DLGFDWCVDIVKGSPYQELSNELEITRSIAYLKMKDFTKATETLKKFEKK
DSKMQSQAAVNLAFMYFLEGENAQSDKHADIAITADRYNPAALVNKGNAI
MMSGDFNKAREFYIEAMNIEASCTEAIYNLGLCYKRMGKNDDALECFHKL
HVMLPSNSEVLCQLGVIYEAMGNVTLALEWYQQFLNLVPTDPTVLMRLGN
LYEEEGDKSQAFQYMYESYRYYPSNIDVIAWLGSYYIDAQFIEKAITYFE
RAVQVQPQEVKWHLMLATCYRKAGNYGRAMQTYKEIHQKFPENADCLKFL
VRLFNDQGLVNEGKEYANKLNKLEKNLVQKEQRALSAQRKGSGRSRAGSG
QPEKREYASRDSDLTITSPLSSDRTPLSSDRQDSNRSAPRNRPIDASYVD
PMGEAPSRPKTAGGHGRPTVDDDFGDDDIGDDLLPD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044953XLOC_044953Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072411TCONS_00072411Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 713..740
NoneNo IPR availablePFAMPF13432TPR_16coord: 632..687
e-value: 1.2E-5
score: 25.7
NoneNo IPR availablePFAMPF13424TPR_12coord: 241..302
e-value: 1.5E-7
score: 31.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 731..836
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 592..625
e-value: 9.8
score: 15.0
coord: 490..523
e-value: 0.37
score: 19.9
coord: 456..489
e-value: 100.0
score: 6.0
coord: 660..693
e-value: 0.057
score: 22.5
coord: 626..659
e-value: 110.0
score: 5.8
coord: 524..557
e-value: 6.3E-5
score: 32.4
coord: 277..310
e-value: 20.0
score: 12.3
coord: 238..271
e-value: 2.8E-4
score: 30.2
coord: 558..591
e-value: 0.0019
score: 27.5
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 594..624
e-value: 0.1
score: 12.8
coord: 559..587
e-value: 0.048
score: 13.8
IPR019734Tetratricopeptide repeatPFAMPF13174TPR_6coord: 525..550
e-value: 0.0028
score: 18.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 524..557
score: 10.797
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 238..271
score: 10.414
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 277..310
score: 9.676
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 660..693
score: 7.995
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 626..659
score: 10.325
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 421..454
score: 5.163
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 490..523
score: 7.965
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 592..625
score: 9.617
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 558..591
score: 10.384
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 651..740
e-value: 3.9E-13
score: 48.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 131..252
e-value: 6.7E-6
score: 25.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 253..286
e-value: 9.1E-8
score: 31.5
coord: 567..602
e-value: 2.0E-11
score: 43.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 422..508
e-value: 4.1E-10
score: 39.1
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 603..650
e-value: 1.2E-10
score: 40.7
coord: 287..383
e-value: 6.2E-7
score: 28.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 509..566
e-value: 6.0E-16
score: 57.8
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 206..349
coord: 427..630
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 589..729
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 421..727
score: 51.367
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 202..310
score: 16.873

Blast
[Close]
BLAST of TCONS_00072411-protein vs. Swiss-Prot (Human)
Match: IFT88 (Intraflagellar transport protein 88 homolog OS=Homo sapiens GN=IFT88 PE=1 SV=2)

HSP 1 Score: 885.945 bits (2288), Expect = 0.000e+0
Identity = 438/844 (51.90%), Postives = 606/844 (71.80%), Query Frame = 0 
Query:    7 VTMLKSVHLVGENESEDLYGGFEEEYNPAYDTEGLYEDEGFQQALKTSYGKRAP------GTSAGRPPGTGF-QRMGTAAGRGRPMTGVAADTSQARPMTAVRAAGYSSMGGRAPNQTFDPLNQSKGPAPPLEGKDEDSPEEKVALLEKQVMELIEESCFAAERNDLQMALEKAKEAGRKERNLCRQRDQSQMADQMNLDITYSVLFSLALSYHRLQLWHEANNTYNVIVKNKMFSNAGRLRVNIGNIFFEQGKYSNAVKFYRMALDQIPNTHKDVRIRIMKNIGLVFVRMGQYNDAVTAFEHIMSDKPDVESGFNLLLCSYAIGDKENMKKAFQKLLQVRVDFEDEEKYSGSSDDLKSQLILEAIRDDPLRKWEKEQKAKAERCIMMAAKLIAPVIEPTFDLGFDWCVDIVKGSPYQELSNELEITRSIAYLKMKDFTKATETLKKFEKKDSKMQSQAAVNLAFMYFLEGENAQSDKHADIAITADRYNPAALVNKGNAIMMSGDFNKAREFYIEAMNIEASCTEAIYNLGLCYKRMGKNDDALECFHKLHVMLPSNSEVLCQLGVIYEAMGNVTLALEWYQQFLNLVPTDPTVLMRLGNLYEEEGDKSQAFQYMYESYRYYPSNIDVIAWLGSYYIDAQFIEKAITYFERAVQVQPQEVKWHLMLATCYRKAGNYGRAMQTYKEIHQKFPENADCLKFLVRLFNDQGLVNEGKEYANKLNKLEKNLVQKEQR-------ALSAQRKGSGRSRAGSGQPEKREYASRDSDLTITSPLSSDRTPLSSDRQDSNRSAPRNRPIDASYVDPMGEAPSRPKTAGGHGRPTVDDDFGDDDIGDDLLPD 836
            V M+++VHL  E + +DLY G+ + YNP YD E L  D  FQQA++TS+G+R P       T+  RP  TG+  +   A+  GRPMTG   D    RPMTAVRAAG++    R     FDPL+QS+GPA PLE K +DSPEEK+  LEK+V EL+EESC A    DL++ALEKAK+AGRKER L RQR+Q    + +NLD+TYSVLF+LA  Y   +++ EA NTY VIVKNKMFSNAG L++N+GNI+ +Q  YS A+KFYRMALDQ+P+ +K +RI+IM+NIG+ F++ GQY+DA+ ++EHIMS  P++++G+NL +C +AIGD+E MKKAFQKL+ V ++  DE+KY   SDD  + L+ EAI++D LR+ E+E+KA AE+ IM +AKLIAPVIE +F  G+DWCV++VK S Y EL+N+LEI +++ YL+ KD+ +A E LK  EKKDS+++S AA NL+ +Y++  + AQ+  +ADIA+ +DRYNPAAL NKGN +  +GD+ KA EFY EA+  ++SCTEA+YN+GL Y+++ + D+AL+CF KLH +L +++EVL Q+  IYE M N + A+EW  Q ++++PTDP VL +LG LY+ EGDKSQAFQY YESYRY+P NI+VI WLG+YYID QF EKAI YFERA  +QP +VKW LM+A+C+R++GNY +A+ TYK+ H+KFPEN +CL+FLVRL  D GL  + +EYA KL +LEK    +EQR       +  ++ K  G +   SGQ     Y++      +++ L +   P +++  +S+     N+ IDASYVDP+G    RPKTA    +   +DDF D+++GDDLLP+
Sbjct:    8 VQMMQNVHLAPETDEDDLYSGYND-YNPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAVTRPIATGYGSKTSLASSIGRPMTGAIQD-GVTRPMTAVRAAGFTKAALRG--SAFDPLSQSRGPASPLEAKKKDSPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTTPENINLDLTYSVLFNLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQKLITVPLEI-DEDKYISPSDDPHTNLVTEAIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLGL-KDAQEYARKLKRLEKMKEIREQRIKSGRDGSGGSRGKREGSASGDSGQ----NYSASSKGERLSARLRA--LPGTNEPYESS----SNKEIDASYVDPLGPQIERPKTAA--KKRIDEDDFADEELGDDLLPE 833
The following BLAST results are available for this feature:
BLAST of TCONS_00072411-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT880.000e+051.90Intraflagellar transport protein 88 homolog OS=Hom... [more]
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