TCONS_00072370-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072370-protein
Unique NameTCONS_00072370-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1266

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072370-protein ID=TCONS_00072370-protein|Name=TCONS_00072370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1266bp
MGNILTKGNSSRHNTNRISNLTEIDPVEHLDSVNNLEEIRVPDKTSKHKS
KSISLFTFSKRSFIRKTSSLQPQSNTQNIPSNPLEQLRVENANLKEEILR
ITDRNLEEHQALNSEVQRLKTENKTLNSALRKLRADKDRALATEKDAVER
ANNFELEKEKSQRQFKTYREAKENEIRDLYKQIHALQNQSLPTRRDHGNE
ESIINDALMESGDFRHTRLVNDWLLEGQSGVGVESLAGQQLEENKLKQLA
QNSKKSKEVSQTFKAVLQSTQEAGYGIPLTNVYSVFVTSTTETKSIADAF
MNQCERLQLQLEPEGKLLTLTYFLTLPPTKLDKTEELTQQHHFSKSNVVI
AIVDEATSYFAVSLSTITEALSTNKICFICSVNQLSTEVTTLIEKDLHAA
SQVHFIHSEGQTENLISSCYERMANVCKLFHDKQIIQQDLISSNDTSNTL
TKVSHDVFKSWDMLGMEEQSSIQAYFKSKPLPTGAFGREMSYLNNYITQD
GPVMPMLVKGAQGSGISTMFSHWIASIENSLSNSCILYHVADPHSAYSID
SFHLLRRFLILLLDQLPLIFSVKDTEKEFPRWLDRACNKHQNGVVIVIDG
IDLIENYKEIFKWMLDPLPVPVRVIVSVTGNGAYPNQWNKWSSLVVEGNR
EEALTHCHMKMSKLDNTECVSCQQLIQNIMTNKSYLGLISNHLYRNVLCT
VLQYMMSDAEMQTISSRLLNCKSLKDLLSVVLTILERRHNKRLFSLVLHW
VYFSQNGLTLAELIELGGNDPDLLPILFDLESVEILVSINGLVKFVHSVC
KETVFRHLSIPKNIDDASTRTIRQNLVDLFEKKLTLGCVSYRVADELPAQ
LAALKDKESLFKCLSSIFVFVHLYRRGRLTTLVNYWKILSRDTSAVKDIY
CSALQSILDESKDESSFNEQITMLYDLLGDFYKDLGLFSIAQKLLEKSLE
LKEEHLEPDDILLTRSYFLLARLFTQWKKYQTAEEYLKQALECNDVSTEG
ASSSIATILEFLAMLCQHQEKGKDADIYRKNAIGLRDTHFFQHELVSIKL
SLVECTQLAVTLSESASSHVTLEETTGWLVSISFIYFHLKQYSEAAEVLQ
QALRYLTKDNNGDMQNYQAVIDIQCKLSFVYTTMGQNDKAESMLERALNI
YFTLNLLEDPNLATVINSLVKLYRSQKRMDSLERLHRSHMKAMERYYGVD
DIRVAHVINELAVHLSKMNKFEEAIELYEQAMNVYINQLGFQDVHVSEVL
SNLAHLFSEQRQGDLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044939XLOC_044939Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072370TCONS_00072370Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR011991WHTH_DNA-bd_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1089..1109
NoneNo IPR availableCOILSCoilCoilcoord: 109..189
NoneNo IPR availableCOILSCoilCoilcoord: 1218..1238
NoneNo IPR availableCOILSCoilCoilcoord: 84..104
NoneNo IPR availablePFAMPF13374TPR_10coord: 1125..1151
e-value: 0.012
score: 15.3
NoneNo IPR availablePFAMPF13424TPR_12coord: 1162..1235
e-value: 5.1E-9
score: 36.2
coord: 922..992
e-value: 9.0E-12
score: 45.0
NoneNo IPR availableGENE3D1.20.1250.10coord: 1054..1144
e-value: 7.3E-8
score: 31.8
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 1205..1238
e-value: 0.36
score: 19.9
coord: 922..955
e-value: 38.0
score: 9.9
coord: 1076..1109
e-value: 55.0
score: 8.5
coord: 1121..1154
e-value: 180.0
score: 4.0
coord: 964..997
e-value: 0.11
score: 21.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 922..955
score: 8.29
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 1205..1238
score: 8.614
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 1121..1154
score: 6.018
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 964..997
score: 7.847
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 1076..1109
score: 6.933
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 963..1018
e-value: 8.3E-5
score: 22.4
coord: 844..962
e-value: 1.7E-5
score: 24.7
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 915..1037
coord: 1074..1111
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 1092..1262
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 1145..1192
e-value: 3.9E-6
score: 26.5
coord: 1193..1264
e-value: 1.1E-11
score: 44.3
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1121..1154
score: 6.566
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 922..997
score: 10.979
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1076..1109
score: 7.61
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1205..1238
score: 9.564

Blast
BLAST of TCONS_00072370-protein vs. Swiss-Prot (Human)
Match: NPHP3 (Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 7.481e-86
Identity = 335/1214 (27.59%), Postives = 542/1214 (44.65%), Query Frame = 0
Query:  112 LNSEVQRLKTENKTLNSALRKLRADKDRALATEKDAVERANNFELEKEKSQRQFKTYREAKENEIRDLYK-------QIHALQNQSLPTRRDHGNEESIINDALMESGDFRHTRLVNDWLLEGQSGVGVESLAGQQLEENKLKQLAQNSKKSKEVSQTFKAV------------LQSTQEAGYGIPLTNVYSVFVTSTTETKSIADAFM-NQCERLQLQLEPEGKLLTLTYFLTLPPTKLDKTEELTQQHHFSKSNVVIAIVDEATSYFAVSLSTITEALSTNK------ICFICSVNQLSTE-VTTLIEK--DLHAASQVHFIHSEGQTENLISSCYERMANVCKLFHDKQIIQQDLIS-------SNDTSNTLTKVSHDVFKS--WDMLGMEEQSSIQAYFKSKPLPTGAFGREMSY--LNNYITQDGPVMPMLVKGAQGSGISTMFSHWIASIENSLSNSCILYH-VADPHSAYSIDSFHLLRRFLILLLDQLPLIFSVKDTEK---EFPRWLDRACNKHQNGVVIVIDGIDLIENYKEIFKWMLDPLPVPVRVIVSVTGNGAYPNQWNKWSSLVVEG-----NREEALTHCHMKMSKLDNTECVSCQQLIQNIMTNKSYLGLISNHLYRNVLCTVLQYMMSDAEMQTISSRLLNCKSLKDLLSVVL-TILERRHN---KRLFSLVLHWVYFSQNGLTLAELIELGGNDPD-----LLPILFDLESVEILVSINGLVKFVHSVCKETV-FRHLSIPKNIDDASTRTIRQNLVDLFEKKLTLGCVSYRVADELPAQLAALKDKESLFKCLSSIFVFVHLYRRGRLTTLVNYWKILSRDTSAVKDIYCSALQSILDESKDESSFNEQITMLYDLLGDFYKDLGLFSIAQKLLEKSLELKEEHLEPDDILLTRSYFLLARLFTQWKKYQTAEEYLKQALECNDVSTEGASSSIATILEFLAMLCQHQEKGKDADIYRKNAIGLRDTHFFQH-ELVSIKLSLVECTQL-AVTLSESASSHV-TLEETTGWLVSISFIYFHLKQYSEAAEVLQQAL----RYLTKDNNGDMQNYQAVIDIQCKLSFVYTTMGQNDKAESMLERALNIYFTLNLLEDPNLATVINSLVKLYRSQKRMDSLERLHRSHMKAMERYYGVDDIRVAHVINELAVHLSKMNKFEEAIELYEQAMNVYINQLGFQDVHVSEVLSNLAHLFSE 1259
            L++E +RL+ E + L    +K+  +K+ AL  +  A+ERA  FE +++K +RQFK +RE KENEI+DL +       ++  LQ Q +    D G  +S  N       D        ++   G   +G E   G  ++  +  +  + +  S +V   F  V            LQ T    + +  +N    ++  T ET+   D F+ +   +L+   E  G      YF    P  ++      ++    KS++VI  +    +  ++ L    EA   N       I       ++S++ V  LI++  +L+  S+   I   G     +   Y     +C     ++II+QD++        + D  +  +    D F    WD+   +EQ      F+         G E  Y  LN+ +    P+ P+LV G  GSG S + S WI   + +  N+ IL H V  P S  S  S  + R  L L+     +     D  K   EFPRWL++   +HQ  ++IVID ID ++  ++  KW++DPLPV VRVIVSV      P  W  W +L ++       +   +  CH    KL   +    ++  ++  T         N LY  +   ++        +  I  +   C+    L  +VL +I E   N   K L   +L  V  S NG++ +EL+EL    P+     L  ++  L  + +L    GL++F H    ETV   +L  P       T + RQ L++ F  +L+   V++R ADELP        K+ L  CL ++FV  +LY+RG    L++YW+ + +D SA+   Y  +L+      + E + +  +  LY+ LG F KDLGL S A   L++SLE++E  L+PD   + +S   LA ++ QWKK+  AE+  KQALE ++ +        A  LE LA L Q Q K + A+ +RK +  +      +   L    L      QL  +TL +    +  TL E       +  +Y+       A + L+++L    R L  D+    Q+          L+ +     Q DKAE + ERAL+I       + P+LA  +  L  LY+   ++D    L+   ++  ++ +G     VA  +  LAV  S+M K  EA+ LYE+A+ +Y + LG     V E L NLA L  E
Sbjct:  119 LDTENKRLRAELQALQKTYQKILREKESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQGIQVF-DPGESDSDDN-----CTDVTAAGTQCEYWTGG--ALGSEPSIGSMIQLQQSFRGPEFAHSSIDVEGPFANVNRDDWDIAVASLLQVTPLFSHSL-WSNTVRCYLIYTDETQPEMDLFLKDYSPKLKRMCETMGYFFHAVYF----PIDVENQYLTVRKWEIEKSSLVILFIH--LTLPSLLLEDCEEAFLKNPEGKPRLIFHRLEDGKVSSDSVQQLIDQVSNLNKTSKAKIIDHSGDPAEGVYKTY-----ICV----EKIIKQDILGFENTDLETKDLGSEDSIPEEDDFGDVLWDIHDEQEQMET---FQQASNSAHELGFEKYYQRLNDLVAAPAPIPPLLVSGGPGSGKSLLLSKWIQLQQKNSPNTLILSHFVGRPMSTSSESSLIIKRLTLKLMQHSWSVSALTLDPAKLLEEFPRWLEKLSARHQGSIIIVIDSIDQVQQVEKHMKWLIDPLPVNVRVIVSVNVETC-PPAWRLWPTLHLDPLSPKDAKSIIIAECHSVDIKLSKEQEKKLERHCRSATT--------CNALYVTLFGKMIARAGRAGNLDKILHQCFQCQDTLSLYRLVLHSIRESMANDVDKELMKQILCLVNVSHNGVSESELMELY---PEMSWTFLTSLIHSLYKMCLLTYGCGLLRFQHLQAWETVRLEYLEGP-----TVTSSYRQKLINYFTLQLSQDRVTWRSADELPWLFQQQGSKQKLHDCLLNLFVSQNLYKRGHFAELLSYWQFVGKDKSAMATEYFDSLKQYEKNCEGEDNMS-CLADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNE-------LGVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLN-------NLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYE 1273          
The following BLAST results are available for this feature:
BLAST of TCONS_00072370-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPHP37.481e-8627.59Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1[more]
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